Pregenerated sensors for GJE1 (Homo sapiens)

Ensembl gene IDs: ENSG00000203733

Ensembl transcript IDs: ENST00000450456.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GATTGTAACAGAAGAGGTTTACTTCTCTTTTGTCTGGATCGCAAATaGAGTGCAAGGCCTCATTCCCATAAACTGCAAAGCCTAGCACCC	+
Preference number: 5 (lower is better) Translates to: DCNRRGLLLFCLDRK*SARPHSHKLQSLAP Trigger: GGGTGCTAGGCTTTGCAGTTTATGGGAATGAGGCCTTGCACTTCATTTGCGATCCAGACAAAAGAGAAGTAAACCTCTTCTGTTACAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450456.2
CDS CCA 90 bp	TGGCCTGAACTGATTGTAACAGAAGAGGTTTACTTCTCTTTTGTCTaGATCGCAAATGAAGTGCAAGGCCTCATTCCCATAAACTGCAAA	+
Preference number: 5 (lower is better) Translates to: WPELIVTEEVYFSFV*IANEVQGLIPINCK Trigger: TTTGCAGTTTATGGGAATGAGGCCTTGCACTTCATTTGCGATCCAGACAAAAGAGAAGTAAACCTCTTCTGTTACAATCAGTTCAGGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450456.2
CDS CCA 72 bp	GACATGTCTCAGGAGATGTTATCCTGGCATTCCTGTTaGTTAATTCTTGACCCACATTGCCAGTTTGCTTCT	+
Preference number: 6 (lower is better) Translates to: DMSQEMLSWHSC*LILDPHCQFAS Trigger: AGAAGCAAACTGGCAATGTGGGTCAAGAATTAACCAACAGGAATGCCAGGATAACATCTCCTGAGACATGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450456.2
CDS TCA 72 bp	AGAAGAGGTTTACTTCTCTTTTGTCTGGATCGCAAATaGAGTGCAAGGCCTCATTCCCATAAACTGCAAAGC	+
Preference number: 6 (lower is better) Translates to: RRGLLLFCLDRK*SARPHSHKLQS Trigger: GCTTTGCAGTTTATGGGAATGAGGCCTTGCACTTCATTTGCGATCCAGACAAAAGAGAAGTAAACCTCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450456.2
CDS CAA 90 bp	CCCGAGGAAGAATATTCGGATCGATCCAAAGAAAAGGGTGTGGAATaGACCAATCACAGTTGGAGGTTTAACACATCCTTCATAGAAGTT	+
Preference number: 6 (lower is better) Translates to: PEEEYSDRSKEKGVE*TNHSWRFNTSFIEV Trigger: AACTTCTATGAAGGATGTGTTAAACCTCCAACTGTGATTGGTCAATTCCACACCCTTTTCTTTGGATCGATCCGAATATTCTTCCTCGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450456.2
CDS CCA 72 bp	CTGATTGTAACAGAAGAGGTTTACTTCTCTTTTGTCTaGATCGCAAATGAAGTGCAAGGCCTCATTCCCATA	+
Preference number: 6 (lower is better) Translates to: LIVTEEVYFSFV*IANEVQGLIPI Trigger: TATGGGAATGAGGCCTTGCACTTCATTTGCGATCCAGACAAAAGAGAAGTAAACCTCTTCTGTTACAATCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450456.2
CDS TCA 72 bp	AATATTCGGATCGATCCAAAGAAAAGGGTGTGGAATTaGCCAATCACAGTTGGAGGTTTAACACATCCTTCA	+
Preference number: 6 (lower is better) Translates to: NIRIDPKKRVWN*PITVGGLTHPS Trigger: TGAAGGATGTGTTAAACCTCCAACTGTGATTGGTCAATTCCACACCCTTTTCTTTGGATCGATCCGAATATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450456.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu