Pregenerated sensors for GJA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000152661Ensembl transcript IDs: ENST00000647564.1
Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCGCAGCGCTGCTACGACCGTGAGGCGCGCGTCTCGGAAACAGGCTaGCTTGCCCCGGACGCGTCATCAGCTTCCCGAGGGTCTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: AQRCYDREARVSETG*LAPDASSASRGSLL Trigger: GAGGAGAGACCCTCGGGAAGCTGATGACGCGTCCGGGGCAAGTCAGCCTGTTTCCGAGACGCGCGCCTCACGGTCGTAGCAGCGCTGCGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647564.1 |
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| CDS CCA 90 bp | GAGCTTATCGATGAGCGTTATCAGAAACCCCCAGCAAAGGCTGGCTaGGTCACTAAAGGGGCAGGGTGGGCGCAGCGCTGCTACGACCGT | + |
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Preference number: 5 (lower is better) Translates to: ELIDERYQKPPAKAG*VTKGAGWAQRCYDR Trigger: ACGGTCGTAGCAGCGCTGCGCCCACCCTGCCCCTTTAGTGACCCAGCCAGCCTTTGCTGGGGGTTTCTGATAACGCTCATCGATAAGCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647564.1 |
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| CDS GCA 72 bp | GGCTGGGTCACTAAAGGGGCAGGGTGGGCGCAGCGCTaGTACGACCGTGAGGCGCGCGTCTCGGAAACAGGC | + |
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Preference number: 6 (lower is better) Translates to: GWVTKGAGWAQR*YDREARVSETG Trigger: GCCTGTTTCCGAGACGCGCGCCTCACGGTCGTAGCAGCGCTGCGCCCACCCTGCCCCTTTAGTGACCCAGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647564.1 |
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| CDS CAA 90 bp | AGCGCTGCTACGACCGTGAGGCGCGCGTCTCGGAAACAGGCTGACTaGCCCCGGACGCGTCATCAGCTTCCCGAGGGTCTCTCCTCCCTG | + |
|
Preference number: 6 (lower is better) Translates to: SAATTVRRASRKQAD*PRTRHQLPEGLSSL Trigger: CAGGGAGGAGAGACCCTCGGGAAGCTGATGACGCGTCCGGGGCAAGTCAGCCTGTTTCCGAGACGCGCGCCTCACGGTCGTAGCAGCGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647564.1 |
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| CDS TCA 72 bp | TGCTACGACCGTGAGGCGCGCGTCTCGGAAACAGGCTaGCTTGCCCCGGACGCGTCATCAGCTTCCCGAGGG | + |
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Preference number: 6 (lower is better) Translates to: CYDREARVSETG*LAPDASSASRG Trigger: CCCTCGGGAAGCTGATGACGCGTCCGGGGCAAGTCAGCCTGTTTCCGAGACGCGCGCCTCACGGTCGTAGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647564.1 |
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| CDS CAA 72 bp | ACGACCGTGAGGCGCGCGTCTCGGAAACAGGCTGACTaGCCCCGGACGCGTCATCAGCTTCCCGAGGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: TTVRRASRKQAD*PRTRHQLPEGL Trigger: GAGACCCTCGGGAAGCTGATGACGCGTCCGGGGCAAGTCAGCCTGTTTCCGAGACGCGCGCCTCACGGTCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647564.1 |
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| CDS CCA 72 bp | GATGAGCGTTATCAGAAACCCCCAGCAAAGGCTGGCTaGGTCACTAAAGGGGCAGGGTGGGCGCAGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: DERYQKPPAKAG*VTKGAGWAQRC Trigger: GCAGCGCTGCGCCCACCCTGCCCCTTTAGTGACCCAGCCAGCCTTTGCTGGGGGTTTCTGATAACGCTCATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647564.1 |
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| CDS CCA 72 bp | TGGGCACCACCTGGAGAGAAAGAGAAGCACGCCTTTTaGGAGCAAGGAGAGCTTATCGATGAGCGTTATCAG | + |
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Preference number: 6 (lower is better) Translates to: WAPPGEKEKHAF*EQGELIDERYQ Trigger: CTGATAACGCTCATCGATAAGCTCTCCTTGCTCCCAAAAGGCGTGCTTCTCTTTCTCTCCAGGTGGTGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647564.1 |
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