Pregenerated sensors for GGCT (Homo sapiens)
Ensembl gene IDs: ENSG00000006625Ensembl transcript IDs: ENST00000005374.10, ENST00000275428.9, ENST00000409144.5, ENST00000409390.5, ENST00000409436.2, ENST00000426081.5, ENST00000440082.5, ENST00000447901.1
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTaGGGTCTCTATCCCACATTCTTGTCTTGTGCTTGCAAGGGTGAT | + |
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Preference number: 1 (lower is better) Translates to: GPANRELSLGSEQEF*GLYPTFLSCACKGD Trigger: ATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| 3UTR GCA 90 bp | GAACAGGAATTTTGGGGTCTCTATCCCACATTCTTGTCTTGTGCTTaGAAGGGTGATTTCCCTGATTCTGAAAGGCAGTGTGACGTTTCT | + |
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Preference number: 1 (lower is better) Translates to: EQEFWGLYPTFLSCA*KGDFPDSERQCDVS Trigger: AGAAACGTCACACTGCCTTTCAGAATCAGGGAAATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAATTCCTGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| 3UTR-3UTR TCA 90 bp | ACAGAGAGCAGTTTCGGTTACAACGCCAGAGGTTACCCTTGCTCTGAATTGGACCTATTACAGGTGCCATaGCCTGATTGGGCCTGCCAA | + |
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Preference number: 2 (lower is better) Translates to: TESSFGYNARGYPCSELDLLQVP*PDWACQ Trigger: TTGGCAGGCCCAATCAGGTCATGGCACCTGTAATAG...GTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGTAACCGAAACTGCTCTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGAGAGCAGTTTCGGTTACAACGCCAGAGGTTACCCTTGCTCTGAATTGGACGCTAAGCTTAGGTTCTaGACAGGAATTTTGGGGTCT | + |
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Preference number: 2 (lower is better) Translates to: TESSFGYNARGYPCSELDAKLRF*TGILGS Trigger: AGACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGC...GTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGTAACCGAAACTGCTCTCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| 3UTR-3UTR GCA 90 bp | ATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTGGGGTATTACCTATTACAGGTaGCATGACCTGATTGGGCCT | + |
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Preference number: 2 (lower is better) Translates to: IGPANRELSLGSEQEFWGITYYR*HDLIGP Trigger: AGGCCCAATCAGGTCATGGCACCTGTAATAGGTAAT...ACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| 3UTR CAA 90 bp | AGCTTAGGTTCTGAACAGGAATTTTGGGGTCTCTATCCCACATTCTaGTCTTGTGCTTGCAAGGGTGATTTCCCTGATTCTGAAAGGCAG | + |
|
Preference number: 2 (lower is better) Translates to: SLGSEQEFWGLYPTF*SCACKGDFPDSERQ Trigger: CTGCCTTTCAGAATCAGGGAAATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAATTCCTGTTCAGAACCTAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| 3UTR-3UTR TCA 90 bp | ACATTCTTGTCTTGTGCTTGCAAGGGTGATTTCCCTGATTCTGAAAGGCAGTGTGCTAAGCTTAGGTTCTaGACAGGAATTTTGGGGTCT | + |
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Preference number: 2 (lower is better) Translates to: TFLSCACKGDFPDSERQCAKLRF*TGILGS Trigger: AGACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGC...ACACTGCCTTTCAGAATCAGGGAAATCACCCTTGCAAGCACAAGACAAGAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| 3UTR GCA 72 bp | CAAACGAGGCCTAGGAACCAGATTACCTATTACAGGTaGCATGACCTGATTGGGCCTGCCAACAGAGAGCTA | + |
|
Preference number: 3 (lower is better) Translates to: QTRPRNQITYYR*HDLIGPANREL Trigger: TAGCTCTCTGTTGGCAGGCCCAATCAGGTCATGGCACCTGTAATAGGTAATCTGGTTCCTAGGCCTCGTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| 3UTR TCA 72 bp | CAGTTTCGGTTACAACGCCAGAGGTTACCCTTGCTCTaGATTGGACATGGGGGAATAAATGGCAACTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: QFRLQRQRLPLL*IGHGGINGNCV Trigger: AACACAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGTAACCGAAACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| 3UTR TCA 72 bp | GATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTaGACAGGAATTTTGGGGTCTCTATCCCACATTCTT | + |
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Preference number: 3 (lower is better) Translates to: DWACQQRAKLRF*TGILGSLSHIL Trigger: AAGAATGTGGGATAGAGACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| 3UTR CCA 72 bp | ACAACGCCAGAGGTTACCCTTGCTCTGAATTGGACATaGGGGAATAAATGGCAACTGTGTTTAGCGGTACTT | + |
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Preference number: 3 (lower is better) Translates to: TTPEVTLALNWT*GNKWQLCLAVL Trigger: AAGTACCGCTAAACACAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| 3UTR GCA 72 bp | TTTTGGGGTCTCTATCCCACATTCTTGTCTTGTGCTTaGAAGGGTGATTTCCCTGATTCTGAAAGGCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: FWGLYPTFLSCA*KGDFPDSERQC Trigger: ACACTGCCTTTCAGAATCAGGGAAATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| 3UTR CCA 72 bp | AACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTaGGGTCTCTATCCCACATTCTTGTCTTGTGCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: NRELSLGSEQEF*GLYPTFLSCAC Trigger: GCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR CCA 90 bp | ACCCTTGCTCTGAATTGGACATGGGGGAATAAATGGCAACTGTGTTTAGCGGTACAGAGAGCGCAACACTaGGGCCCACTACCCCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: TLALNWTWGNKWQLCLAVQRAQH*GPLPRR Trigger: GCGCCGGGGTAGTGGGCCCCAGTGTTGCGCTCTCTG...TACCGCTAAACACAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR CCA 90 bp | CCTGATTCTGAAAGGCAGTGTGACGTTTCTTTCTCCACCTTTTTATACTGTGGGCAGAGAGCGCAACACTaGGGCCCACTACCCCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: PDSERQCDVSFSTFLYCGQRAQH*GPLPRR Trigger: GCGCCGGGGTAGTGGGCCCCAGTGTTGCGCTCTCTG...CCCACAGTATAAAAAGGTGGAGAAAGAAACGTCACACTGCCTTTCAGAATCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR CCA 90 bp | GAGAGCAGTTTCGGTTACAACGCCAGAGGTTACCCTTGCTCTGAATTGGACATGACTACGCCCCTGCACTaGAGCCTGAAGCAGAGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: ESSFGYNARGYPCSELDMTTPLH*SLKQSV Trigger: TACACTCTGCTTCAGGCTCCAGTGCAGGGGCGTAGT...CATGTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGTAACCGAAACTGCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR CCA 90 bp | TTCCAAACGAGGCCTAGGAACCAGATTACCTATTACAGGTGCCATGACCTGATTCCTTGCAGCCCGAGTTaGCCATATCCCACTACGCCC | + |
|
Preference number: 4 (lower is better) Translates to: FQTRPRNQITYYRCHDLIPCSPS*PYPTTP Trigger: GGGCGTAGTGGGATATGGCCAACTCGGGCTGCAAGG...AATCAGGTCATGGCACCTGTAATAGGTAATCTGGTTCCTAGGCCTCGTTTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR TCA 90 bp | TGCCATGACCTGATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGTCATCGCCAGGACTCTaGAAAATGGTGGCTATCCCT | + |
|
Preference number: 4 (lower is better) Translates to: CHDLIGPANRELSLGSEQSSPGL*KMVAIP Trigger: AGGGATAGCCACCATTTTTCAGAGTCCTGGCGATGA...CTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATCAGGTCATGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000409436.2 ENST00000426081.5 |
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| CDS-3UTR GCA 90 bp | ACAGAGAGCAGTTTCGGTTACAACGCCAGAGGTTACCCTTGCTCTGAATTGGACGCCAGAGGTTACCCTTaGTCTGAATTGGACATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: TESSFGYNARGYPCSELDARGYP*SELDMG Trigger: CCCCATGTCCAATTCAGAGCAAGGGTAACCTCTGGC...GTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGTAACCGAAACTGCTCTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR GCA 90 bp | TCTTGTCTTGTGCTTGCAAGGGTGATTTCCCTGATTCTGAAAGGCAGTGTGACGCTTTTAACCCCTTCTTaGCTGCAGGCGGGCCACACA | + |
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Preference number: 4 (lower is better) Translates to: SCLVLARVISLILKGSVTLLTPS*LQAGHT Trigger: TGTGTGGCCCGCCTGCAGGCAAGAAGGGGTTAAAAG...CGTCACACTGCCTTTCAGAATCAGGGAAATCACCCTTGCAAGCACAAGACAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR TCA 90 bp | ACAGAGAGCAGTTTCGGTTACAACGCCAGAGGTTACCCTTGCTCTGAATTGGACTCATCGCCAGGACTCTaGAAAATGGTGGCTATCCCT | + |
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Preference number: 4 (lower is better) Translates to: TESSFGYNARGYPCSELDSSPGL*KMVAIP Trigger: AGGGATAGCCACCATTTTTCAGAGTCCTGGCGATGA...GTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGTAACCGAAACTGCTCTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR TCA 90 bp | ATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTGGGGTCTATTACAGGTGCCATaGCCTGATTGGGCCTGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: IGPANRELSLGSEQEFWGLLQVP*PDWACQ Trigger: TTGGCAGGCCCAATCAGGTCATGGCACCTGTAATAG...ACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000409436.2 ENST00000426081.5 ENST00000447901.1 |
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| CDS-3UTR CCA 90 bp | GAGAGCAGTTTCGGTTACAACGCCAGAGGTTACCCTTGCTCTGAATTGGACATGCAGGACTCTGAAAAATaGTGGCTATCCCTCCATGCC | + |
|
Preference number: 4 (lower is better) Translates to: ESSFGYNARGYPCSELDMQDSEK*WLSLHA Trigger: GGCATGGAGGGATAGCCACCATTTTTCAGAGTCCTG...CATGTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGTAACCGAAACTGCTCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR TCA 90 bp | CAAACGAGGCCTAGGAACCAGATTACCTATTACAGGTGCCATGACCTGATTGGGAGGTTACCCTTGCTCTaGATTGGACATGGGGGAATA | + |
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Preference number: 4 (lower is better) Translates to: QTRPRNQITYYRCHDLIGRLPLL*IGHGGI Trigger: TATTCCCCCATGTCCAATTCAGAGCAAGGGTAACCT...CCCAATCAGGTCATGGCACCTGTAATAGGTAATCTGGTTCCTAGGCCTCGTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR GCA 90 bp | TCTTGTCTTGTGCTTGCAAGGGTGATTTCCCTGATTCTGAAAGGCAGTGTGACGTCTCTGTCAGCAGGTTaGTGCCGTAGGCAAAGTACA | + |
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Preference number: 4 (lower is better) Translates to: SCLVLARVISLILKGSVTSLSAG*CRRQST Trigger: TGTACTTTGCCTACGGCAGCAACCTGCTGACAGAGA...CGTCACACTGCCTTTCAGAATCAGGGAAATCACCCTTGCAAGCACAAGACAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR GCA 90 bp | ATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTGGGGTTCAAGCTTAAAATCCTaGAGGCGGGCCACACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: IGPANRELSLGSEQEFWGSSLKS*RRATQK Trigger: CTTCTGTGTGGCCCGCCTGCAGGATTTTAAGCTTGA...ACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR CCA 90 bp | AGGAATTTTGGGGTCTCTATCCCACATTCTTGTCTTGTGCTTGCAAGGGTGATTACTACGCCCCTGCACTaGAGCCTGAAGCAGAGTGTA | + |
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Preference number: 4 (lower is better) Translates to: RNFGVSIPHSCLVLARVITTPLH*SLKQSV Trigger: TACACTCTGCTTCAGGCTCCAGTGCAGGGGCGTAGT...AATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAATTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR CCA 90 bp | ATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTGGGGTCAGGACTCTGAAAAATaGTGGCTATCCCTCCATGCC | + |
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Preference number: 4 (lower is better) Translates to: IGPANRELSLGSEQEFWGQDSEK*WLSLHA Trigger: GGCATGGAGGGATAGCCACCATTTTTCAGAGTCCTG...ACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000409436.2 ENST00000426081.5 |
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| CDS-3UTR TCA 90 bp | CAAACGAGGCCTAGGAACCAGATTACCTATTACAGGTGCCATGACCTGATTGGGGCTAAGCTTAGGTTCTaGACAGGAATTTTGGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: QTRPRNQITYYRCHDLIGAKLRF*TGILGS Trigger: AGACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGC...CCCAATCAGGTCATGGCACCTGTAATAGGTAATCTGGTTCCTAGGCCTCGTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR GCA 90 bp | ACCCTTGCTCTGAATTGGACATGGGGGAATAAATGGCAACTGTGTTTAGCGGTATCTCTGTCAGCAGGTTaGTGCCGTAGGCAAAGTACA | + |
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Preference number: 4 (lower is better) Translates to: TLALNWTWGNKWQLCLAVSLSAG*CRRQST Trigger: TGTACTTTGCCTACGGCAGCAACCTGCTGACAGAGA...TACCGCTAAACACAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR CCA 90 bp | ATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTGGGGTGACTCTGAAAAATGGTaGCTATCCCTCCATGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: IGPANRELSLGSEQEFWGDSEKW*LSLHAK Trigger: CTTGGCATGGAGGGATAGCCACCATTTTTCAGAGTC...ACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000409436.2 ENST00000426081.5 |
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| CDS-3UTR CCA 90 bp | TGCCATGACCTGATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGACATGGGGGAATAAATaGCAACTGTGTTTAGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: CHDLIGPANRELSLGSEQTWGNK*QLCLAV Trigger: TACCGCTAAACACAGTTGCCATTTATTCCCCCATGT...CTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATCAGGTCATGGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR TCA 90 bp | GACCTGATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTGCTAAGCTTAGGTTCTaGACAGGAATTTTGGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: DLIGPANRELSLGSEQEFAKLRF*TGILGS Trigger: AGACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGC...AAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATCAGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000409436.2 ENST00000426081.5 ENST00000447901.1 |
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| CDS-3UTR CCA 90 bp | ACCCTTGCTCTGAATTGGACATGGGGGAATAAATGGCAACTGTGTTTAGCGGTAGACTCTGAAAAATGGTaGCTATCCCTCCATGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: TLALNWTWGNKWQLCLAVDSEKW*LSLHAK Trigger: CTTGGCATGGAGGGATAGCCACCATTTTTCAGAGTC...TACCGCTAAACACAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR CCA 90 bp | ACAGAGAGCAGTTTCGGTTACAACGCCAGAGGTTACCCTTGCTCTGAATTGGACTCTGAACAGGAATTTTaGGGTCTCTATCCCACATTC | + |
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Preference number: 4 (lower is better) Translates to: TESSFGYNARGYPCSELDSEQEF*GLYPTF Trigger: GAATGTGGGATAGAGACCCCAAAATTCCTGTTCAGA...GTCCAATTCAGAGCAAGGGTAACCTCTGGCGTTGTAACCGAAACTGCTCTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR GCA 90 bp | GACCTGATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTTCTTGTCTTGTGCTTaGAAGGGTGATTTCCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: DLIGPANRELSLGSEQEFFLSCA*KGDFPD Trigger: ATCAGGGAAATCACCCTTGCAAGCACAAGACAAGAA...AAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATCAGGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000409436.2 ENST00000426081.5 ENST00000447901.1 |
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| CDS-3UTR GCA 90 bp | TTCCAAACGAGGCCTAGGAACCAGATTACCTATTACAGGTGCCATGACCTGATTATTACCTATTACAGGTaGCATGACCTGATTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: FQTRPRNQITYYRCHDLIITYYR*HDLIGP Trigger: AGGCCCAATCAGGTCATGGCACCTGTAATAGGTAAT...AATCAGGTCATGGCACCTGTAATAGGTAATCTGGTTCCTAGGCCTCGTTTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR GCA 90 bp | ATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTGGGGTATAATCTATTACAGGTaGCATGACCTGATTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: IGPANRELSLGSEQEFWGIIYYR*HDLIGP Trigger: AGGCCCAATCAGGTCATGGCACCTGTAATAGATTAT...ACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000426081.5 ENST00000447901.1 |
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| CDS-3UTR CCA 90 bp | GACCTGATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTCTGAACAGGAATTTTaGGGTCTCTATCCCACATTC | + |
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Preference number: 4 (lower is better) Translates to: DLIGPANRELSLGSEQEFSEQEF*GLYPTF Trigger: GAATGTGGGATAGAGACCCCAAAATTCCTGTTCAGA...AAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATCAGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000409436.2 ENST00000426081.5 ENST00000447901.1 |
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| CDS-3UTR CCA 90 bp | ACCCTTGCTCTGAATTGGACATGGGGGAATAAATGGCAACTGTGTTTAGCGGTAGCTCTGAATTGGACATaGGGGAATAAATGGCAACTG | + |
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Preference number: 4 (lower is better) Translates to: TLALNWTWGNKWQLCLAVALNWT*GNKWQL Trigger: CAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGC...TACCGCTAAACACAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR CCA 90 bp | ACCCTTGCTCTGAATTGGACATGGGGGAATAAATGGCAACTGTGTTTAGCGGTAACCCTTGCTCTGAATTaGACATGGGGGAATAAATGG | + |
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Preference number: 4 (lower is better) Translates to: TLALNWTWGNKWQLCLAVTLALN*TWGNKW Trigger: CCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGT...TACCGCTAAACACAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR GCA 90 bp | TTTTGGGGTCTCTATCCCACATTCTTGTCTTGTGCTTGCAAGGGTGATTTCCCTTTCTTGTCTTGTGCTTaGAAGGGTGATTTCCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: FWGLYPTFLSCACKGDFPFLSCA*KGDFPD Trigger: ATCAGGGAAATCACCCTTGCAAGCACAAGACAAGAA...AGGGAAATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR GCA 90 bp | TTTTGGGGTCTCTATCCCACATTCTTGTCTTGTGCTTGCAAGGGTGATTTCCCTATAATCTATTACAGGTaGCATGACCTGATTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: FWGLYPTFLSCACKGDFPIIYYR*HDLIGP Trigger: AGGCCCAATCAGGTCATGGCACCTGTAATAGATTAT...AGGGAAATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| 3UTR CAA 72 bp | TCTGAACAGGAATTTTGGGGTCTCTATCCCACATTCTaGTCTTGTGCTTGCAAGGGTGATTTCCCTGATTCT | + |
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Preference number: 4 (lower is better) Translates to: SEQEFWGLYPTF*SCACKGDFPDS Trigger: AGAATCAGGGAAATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAATTCCTGTTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR CCA 90 bp | AGGAATTTTGGGGTCTCTATCCCACATTCTTGTCTTGTGCTTGCAAGGGTGATTTCTGAACAGGAATTTTaGGGTCTCTATCCCACATTC | + |
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Preference number: 4 (lower is better) Translates to: RNFGVSIPHSCLVLARVISEQEF*GLYPTF Trigger: GAATGTGGGATAGAGACCCCAAAATTCCTGTTCAGA...AATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAATTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR GCA 90 bp | ATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTTGGGGTCTTTTAACCCCTTCTTaGTCATCCAGAGAATTTAAA | + |
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Preference number: 4 (lower is better) Translates to: IGPANRELSLGSEQEFWGLLTPS*SSREFK Trigger: TTTAAATTCTCTGGATGAGCAAGAAGGGGTTAAAAG...ACCCCAAAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENST00000409436.2 ENST00000426081.5 |
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| CDS-3UTR GCA 90 bp | ACCCTTGCTCTGAATTGGACATGGGGGAATAAATGGCAACTGTGTTTAGCGGTACTTTTAACCCCTTCTTaGTCATCCAGAGAATTTAAA | + |
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Preference number: 4 (lower is better) Translates to: TLALNWTWGNKWQLCLAVLLTPS*SSREFK Trigger: TTTAAATTCTCTGGATGAGCAAGAAGGGGTTAAAAG...TACCGCTAAACACAGTTGCCATTTATTCCCCCATGTCCAATTCAGAGCAAGGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR CAA 90 bp | TGCCATGACCTGATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGGACCCGTGACGTCCTaGCAGCCCGAGTTGGCCATA | + |
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Preference number: 5 (lower is better) Translates to: CHDLIGPANRELSLGSEQGPVTS*QPELAI Trigger: TATGGCCAACTCGGGCTGCAAGGACGTCACGGGTCC...CTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATCAGGTCATGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000409436.2 ENST00000447901.1 |
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| CDS-3UTR CAA 90 bp | TGCCATGACCTGATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGACTTTTAACCCCTTCTaGCCTGCAGGCGGGCCACAC | + |
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Preference number: 5 (lower is better) Translates to: CHDLIGPANRELSLGSEQTFNPF*PAGGPH Trigger: GTGTGGCCCGCCTGCAGGCAAGAAGGGGTTAAAAGT...CTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATCAGGTCATGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS-3UTR CAA 90 bp | AAAAATTCCAAACGAGGCCTAGGAACCAGATTACCTATTACAGGTGCCATGACCGGACCCGTGACGTCCTaGCAGCCCGAGTTGGCCATA | + |
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Preference number: 5 (lower is better) Translates to: KNSKRGLGTRLPITGAMTGPVTS*QPELAI Trigger: TATGGCCAACTCGGGCTGCAAGGACGTCACGGGTCC...GGTCATGGCACCTGTAATAGGTAATCTGGTTCCTAGGCCTCGTTTGGAATTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000409436.2 |
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| CDS-3UTR CAA 90 bp | GACCTGATTGGGCCTGCCAACAGAGAGCTAAGCTTAGGTTCTGAACAGGAATTTCTCTATCCCACATTCTaGTCTTGTGCTTGCAAGGGT | + |
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Preference number: 5 (lower is better) Translates to: DLIGPANRELSLGSEQEFLYPTF*SCACKG Trigger: ACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAG...AAATTCCTGTTCAGAACCTAAGCTTAGCTCTCTGTTGGCAGGCCCAATCAGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000409436.2 ENST00000426081.5 ENST00000447901.1 |
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| CDS-3UTR CAA 90 bp | AGGAATTTTGGGGTCTCTATCCCACATTCTTGTCTTGTGCTTGCAAGGGTGATTCTCTATCCCACATTCTaGTCTTGTGCTTGCAAGGGT | + |
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Preference number: 5 (lower is better) Translates to: RNFGVSIPHSCLVLARVILYPTF*SCACKG Trigger: ACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAG...AATCACCCTTGCAAGCACAAGACAAGAATGTGGGATAGAGACCCCAAAATTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447901.1 |
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| CDS CCA 72 bp | AGCCCGAGTTGGCCATATCCCACTACGCCCCTGCACTaGAGCCTGAAGCAGAGTGTAAGGAACGGCCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: SPSWPYPTTPLH*SLKQSVRNGQR Trigger: TCTCTGGCCGTTCCTTACACTCTGCTTCAGGCTCCAGTGCAGGGGCGTAGTGGGATATGGCCAACTCGGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000005374.10 ENST00000275428.9 ENST00000409144.5 ENST00000409390.5 ENST00000409436.2 ENST00000440082.5 ENST00000447901.1 |
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| CDS CCA 72 bp | CTACTCCCCACACTTCATCGCCAGGACTCTGAAAAATaGTGGCTATCCCTCCATGCCAAGTTTGACTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: LLPTLHRQDSEK*WLSLHAKFDLF Trigger: AAACAAGTCAAACTTGGCATGGAGGGATAGCCACCATTTTTCAGAGTCCTGGCGATGAAGTGTGGGGAGTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000005374.10 ENST00000275428.9 ENST00000409390.5 ENST00000409436.2 ENST00000426081.5 |
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