RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GEMIN8 (Homo sapiens)

Ensembl gene IDs: ENSG00000046647

Ensembl transcript IDs: ENST00000332885.7, ENST00000380523.8, ENST00000460203.1, ENST00000477386.2, ENST00000680255.1

Found 196 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTTTACTTACTGTCTACAGCTGCTTTCACACTACAAAGGGAGGGTTaGGTAGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATA +
Preference number: 1 (lower is better)
Translates to: VYLLSTAAFTLQREG*VVTTLTVWLAVPKI
Trigger: TATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACTACTCAACCCTCCCTTTGTAGTGTGAAAGCAGCTGTAGACAGTAAGTAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
3UTR GCA 90 bp GTCCTTTGCGAAGAGAAACATTTCACTTTCAAATGCCTCAGCACCTaGTGCAATTCCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAG +
Preference number: 1 (lower is better)
Translates to: VLCEEKHFTFKCLST*CNSRLWFVLVSQSQ
Trigger: CTGTGACTGAGATACAAGTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAATGTTTCTCTTCGCAAAGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR GCA 90 bp CTTTGCGAAGAGAAACATTTCACTTTCAAATGCCTCAGCACCTGCTaGAATTCCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTA +
Preference number: 1 (lower is better)
Translates to: LCEEKHFTFKCLSTC*NSRLWFVLVSQSQL
Trigger: TAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAATGTTTCTCTTCGCAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR GCA 90 bp AATCAATATTTGCTGTATATAGTAAGAAATCAACTGTGCGTTTTCTaGAACAGAGGTGACTGCAGCAGTGACCAGGTTTGGGAATTATTG +
Preference number: 1 (lower is better)
Translates to: NQYLLYIVRNQLCVF*NRGDCSSDQVWELL
Trigger: CAATAATTCCCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAAAACGCACAGTTGATTTCTTACTATATACAGCAAATATTGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCTGGAGCTCGGCTCACTaGAAGCTCCGCCTCCTGGGT +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLWSSAH*KLRLLG
Trigger: ACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGCTCCA...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCGGAAGAAGGAGAGGCTaGGTACCCTGTGCCCTGAGC +
Preference number: 2 (lower is better)
Translates to: WPFIEHASLSTTGSGICLGRRRG*VPCALS
Trigger: GCTCAGGGCACAGGGTACCCAGCCTCTCCTTCTTCC...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCGGAAGAAGGAGAGGCTaGGTACCCTGTGCCCTGAGC +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLGRRRG*VPCALS
Trigger: GCTCAGGGCACAGGGTACCCAGCCTCTCCTTCTTCC...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR TCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCATGGTCTCCATCTCCTaGCCTCGTGATCTGCCCACC +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLMVSIS*PRDLPT
Trigger: GGTGGGCAGATCACGAGGTCAGGAGATGGAGACCAT...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp TTCTGCAACAGAGGTGACTGCAGCAGTGACCAGGTTTGGGAATTATTGTTCTTTGGAAGAAGGAGAGGCTaGGTACCCTGTGCCCTGAGC +
Preference number: 2 (lower is better)
Translates to: FCNRGDCSSDQVWELLFFGRRRG*VPCALS
Trigger: GCTCAGGGCACAGGGTACCCAGCCTCTCCTTCTTCC...AAAGAACAATAATTCCCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp TTCTGCAACAGAGGTGACTGCAGCAGTGACCAGGTTTGGGAATTATTGTTCTTTCTCTGTTGCCCAGGCTaGAGCTCGGCTCACTGCAAG +
Preference number: 2 (lower is better)
Translates to: FCNRGDCSSDQVWELLFFLCCPG*SSAHCK
Trigger: CTTGCAGTGAGCCGAGCTCCAGCCTGGGCAACAGAG...AAAGAACAATAATTCCCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCGTCTCACTACACACTTaGCTCATTTTTAGTGGGGGC +
Preference number: 2 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAVSLHT*LIFSGG
Trigger: GCCCCCACTAAAAATGAGCCAAGTGTGTAGTGAGAC...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAACAACTGTGCGTTTTCTaGAACAGAGGTGACTGCAGC +
Preference number: 2 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREQLCVF*NRGDCS
Trigger: GCTGCAGTCACCTCTGTTGCAGAAAACGCACAGTTG...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAAAATGCCTCAGCACCTaGTGCAATTCCAGGCTTTGG +
Preference number: 2 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREKCLST*CNSRLW
Trigger: CCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTT...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp CGGGCCGGAATTATTGTTCTTTGCTCTCAATTCTGTATGACATCTAAGCTCTGTACAGGCATGAACCATTaGGCCCGGCCGCCTGTTTTT +
Preference number: 2 (lower is better)
Translates to: RAGIIVLCSQFCMTSKLCTGMNH*ARPPVF
Trigger: AAAAACAGGCGGCCGGGCGCAATGGTTCATGCCTGT...ACAGAGCTTAGATGTCATACAGAATTGAGAGCAAAGAACAATAATTCCGGCCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCCAACTGTGCGTTTTCTaGAACAGAGGTGACTGCAGC +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLQLCVF*NRGDCS
Trigger: GCTGCAGTCACCTCTGTTGCAGAAAACGCACAGTTG...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 90 bp TGTTTACTTACTGTCTACAGCTGCTTTCACACTACAAAGGGAGGGTaGAGTAGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGAT +
Preference number: 2 (lower is better)
Translates to: CLLTVYSCFHTTKGG*SSHNTDRVACSAKD
Trigger: ATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACTACTCAACCCTCCCTTTGTAGTGTGAAAGCAGCTGTAGACAGTAAGTAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR TCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAGTGATTTTCATTCCATaGGAGGTGCAGTTGGCAAAC +
Preference number: 2 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREVIFIP*EVQLAN
Trigger: GTTTGCCAACTGCACCTCTCATGGAATGAAAATCAC...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCCCGTGTGGCTTGCAGTaGCAAAGATATTCACTCTCT +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLPCGLQ*QRYSLS
Trigger: AGAGAGTGAATATCTTTGGCACTGCAAGCCACACGG...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCGTCTCACTACACACTTaGCTCATTTTTAGTGGGGGC +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLVSLHT*LIFSGG
Trigger: GCCCCCACTAAAAATGAGCCAAGTGTGTAGTGAGAC...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCACAACACTGACCGTGTaGCTTGCAGTGCCAAAGATA +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLTTLTV*LAVPKI
Trigger: TATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGT...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACCTTCTCAGGTCAACATaGGCTCACCCTGGCAATGTA +
Preference number: 2 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYLLRST*AHPGNV
Trigger: TACATTGCCAGGGTGAGCCCATGTTGACCTGAGAAG...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR TCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAAATGGTCTCCATCTCCTaGCCTCGTGATCTGCCCACC +
Preference number: 2 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQMVSIS*PRDLPT
Trigger: GGTGGGCAGATCACGAGGTCAGGAGATGGAGACCAT...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR TCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAGCTGGCTTTTATAAATaGCCTGCTCCATCAGCTTTT +
Preference number: 2 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREAGFYK*PAPSAF
Trigger: AAAAGCTGATGGAGCAGGTCATTTATAAAAGCCAGC...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCTCATTCCATGAGAGGTaGAGTTGGCAAACTACCATC +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLSFHER*SWQTTI
Trigger: GATGGTAGTTTGCCAACTGCACCTCTCATGGAATGA...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAACATTTCACTTTCAAATaGCTCAGCACCTGCTGCAAT +
Preference number: 2 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREHFTFK*LSTCCN
Trigger: ATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAATG...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAAACATGGGCTCACCCTaGCAATGTACTGTAATAACT +
Preference number: 2 (lower is better)
Translates to: DRHGDFFRGGYKSPLRRENMGSP*QCTVIT
Trigger: AGTTATTACAGTACATTGCCAGGGTGAGCCCATGTT...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAAACAGGCATGAACCATTaGGCCCGGCCGCCTGTTTTT +
Preference number: 2 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQTGMNH*ARPPVF
Trigger: AAAAACAGGCGGCCGGGCGCAATGGTTCATGCCTGT...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGCGGGTTTCATCATGTTaGCCAGGATGGTCTCCATCT +
Preference number: 2 (lower is better)
Translates to: PHNDPTRELLTLILRIRKRVSSC*PGWSPS
Trigger: AGATGGAGACCATCCTGGCCAACATGATGAAACCCG...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR TCA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACAAAATGTCAGGCAGGTaGTTTTCATTCCATGAGAGG +
Preference number: 2 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYKMSGR*FSFHER
Trigger: CCTCTCATGGAATGAAAATCACCTGCCTGACATTTT...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR TCA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACGCTGGCTTTTATAAATaGCCTGCTCCATCAGCTTTT +
Preference number: 2 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYAGFYK*PAPSAF
Trigger: AAAAGCTGATGGAGCAGGTCATTTATAAAAGCCAGC...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGCCCTTTATAGAACATaGATCCCTCTCCACTACAGG +
Preference number: 2 (lower is better)
Translates to: PHNDPTRELLTLILRIRKALYRT*IPLHYR
Trigger: CCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGC...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGCCGTGTGGCTTGCAGTaGCAAAGATATTCACTCTCT +
Preference number: 2 (lower is better)
Translates to: PHNDPTRELLTLILRIRKPCGLQ*QRYSLS
Trigger: AGAGAGTGAATATCTTTGGCACTGCAAGCCACACGG...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp CATGTCAATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCATGCAACAGAGGTGACTaGAGCAGTGACCAGGTTTGG +
Preference number: 2 (lower is better)
Translates to: HVNTKSFHQPLMDVLIFSCNRGD*SSDQVW
Trigger: CCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCA...TGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCGTAAGAAATCAACTGTaGGTTTTCTGCAACAGAGGT +
Preference number: 2 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLVRNQL*VFCNRG
Trigger: ACCTCTGTTGCAGAAAACGCACAGTTGATTTCTTAC...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 90 bp GTTCTTAGAGAGAAACATGTCAATACTAAATCTTTTCACCAGCCTTaGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCACCCTG +
Preference number: 2 (lower is better)
Translates to: VLREKHVNTKSFHQP*MDVLIFSGQHGLTL
Trigger: CAGGGTGAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATGTTTCTCTCTAAGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACGGGTTTCATCATGTTaGCCAGGATGGTCTCCATCT +
Preference number: 2 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQRVSSC*PGWSPS
Trigger: AGATGGAGACCATCCTGGCCAACATGATGAAACCCG...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATGCCCTTTATAGAACATaGATCCCTCTCCACTACAGG +
Preference number: 2 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHALYRT*IPLHYR
Trigger: CCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGC...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAAACTGACCGTGTGGCTTaGAGTGCCAAAGATATTCAC +
Preference number: 2 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQTDRVA*SAKDIH
Trigger: GTGAATATCTTTGGCACTGCAAGCCACACGGTCAGT...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAAACAACACTGACCGTGTaGCTTGCAGTGCCAAAGATA +
Preference number: 2 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQTTLTV*LAVPKI
Trigger: TATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGT...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 90 bp TCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTaGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATATG +
Preference number: 2 (lower is better)
Translates to: SLSNASAPAAIPGFG*YLYLSHSYFIVRHM
Trigger: CATATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR TCA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATGTGATTTTCATTCCATaGGAGGTGCAGTTGGCAAAC +
Preference number: 2 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHVIFIP*EVQLAN
Trigger: GTTTGCCAACTGCACCTCTCATGGAATGAAAATCAC...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp CATGTCAATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCATTTGAGACGGAGTCTTaGTCTTTCTCTAGGTTGGAG +
Preference number: 2 (lower is better)
Translates to: HVNTKSFHQPLMDVLIFSFETES*SFSRLE
Trigger: CTCCAACCTAGAGAAAGAGCAAGACTCCGTCTCAAA...TGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATTTTGAGACGGAGTCTTaGTCTTTCTCTAGGTTGGAG +
Preference number: 2 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHFETES*SFSRLE
Trigger: CTCCAACCTAGAGAAAGAGCAAGACTCCGTCTCAAA...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGTCATTCCATGAGAGGTaGAGTTGGCAAACTACCATC +
Preference number: 2 (lower is better)
Translates to: TRELLTLILRIRKEPEALSFHER*SWQTTI
Trigger: GATGGTAGTTTGCCAACTGCACCTCTCATGGAATGA...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR TCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGGCTCTCAATTCTGTATaGCATCTAAGCTCTGTAGAC +
Preference number: 2 (lower is better)
Translates to: TRELLTLILRIRKEPEALALNSV*HLSSVD
Trigger: GTCTACAGAGCTTAGATGTCATACAGAATTGAGAGC...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CCA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATTCTGTAGACCAAATCTaGCCTGCAGTCTGTTTTTGT +
Preference number: 2 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHSVDQI*PAVCFC
Trigger: ACAAAAACAGACTGCAGGCCAGATTTGGTCTACAGA...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 90 bp TCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACTaGTATCTCAGTCACAGTTATTTTATAGTTAGGCATATGAATTTA +
Preference number: 2 (lower is better)
Translates to: SNASAPAAIPGFGLY*YLSHSYFIVRHMNL
Trigger: TAAATTCATATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR GCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAAGTAAGAAATCAACTGTaGGTTTTCTGCAACAGAGGT +
Preference number: 2 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQVRNQL*VFCNRG
Trigger: ACCTCTGTTGCAGAAAACGCACAGTTGATTTCTTAC...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR TCA 72 bp CTGTCTACAGCTGCTTTCACACTACAAAGGGAGGGTTaGGTAGTCACAACACTGACCGTGTGGCTTGCAGTG +
Preference number: 3 (lower is better)
Translates to: LSTAAFTLQREG*VVTTLTVWLAV
Trigger: CACTGCAAGCCACACGGTCAGTGTTGTGACTACTCAACCCTCCCTTTGTAGTGTGAAAGCAGCTGTAGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
3UTR GCA 72 bp GGAGGGTTGAGTAGTCACAACACTGACCGTGTGGCTTaGAGTGCCAAAGATATTCACTCTCTGGCCCTTTAT +
Preference number: 3 (lower is better)
Translates to: GGLSSHNTDRVA*SAKDIHSLALY
Trigger: ATAAAGGGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACTACTCAACCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
3UTR CCA 72 bp ACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTaGCCCTTTATAGAACATGCATCCCTCTCCACTACA +
Preference number: 3 (lower is better)
Translates to: TVWLAVPKIFTL*PFIEHASLSTT
Trigger: TGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAATGCCCGGCTCATTTTTaGTATTTTAGTAGCGACGGG +
Preference number: 3 (lower is better)
Translates to: DRHGDFFRGGYKSPLRRECPAHF*YFSSDG
Trigger: CCCGTCGCTACTAAAATACAAAAAATGAGCCGGGCA...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp CGGGCCGGAATTATTGTTCTTTGCTCTCAATTCTGTATGACATCTAAGCTCTGTACGGGTTTCATCATGTaGGCCAGGATGGTCTCCATC +
Preference number: 3 (lower is better)
Translates to: RAGIIVLCSQFCMTSKLCTGFIM*ARMVSI
Trigger: GATGGAGACCATCCTGGCCAACATGATGAAACCCGT...ACAGAGCTTAGATGTCATACAGAATTGAGAGCAAAGAACAATAATTCCGGCCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCTGCCCGGCTCATTTTTaGTATTTTAGTAGCGACGGG +
Preference number: 3 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLCPAHF*YFSSDG
Trigger: CCCGTCGCTACTAAAATACAAAAAATGAGCCGGGCA...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAATACAGGCATGAACCATaGCGCCCGGCCGCCTGTTTT +
Preference number: 3 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQYRHEP*RPAACF
Trigger: AAAACAGGCGGCCGGGCGCAATGGTTCATGCCTGTA...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR GCA 72 bp ACAGCCACACCCATTTGTTTACTTACTGTCTACAGCTaGTTTCACACTACAAAGGGAGGGTTGAGTAGTCAC +
Preference number: 3 (lower is better)
Translates to: TATPICLLTVYS*FHTTKGGLSSH
Trigger: GTGACTACTCAACCCTCCCTTTGTAGTGTGAAAGCAGCTGTAGACAGTAAGTAAACAAATGGGTGTGGCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
3UTR GCA 72 bp TTGCTGTATATAGTAAGAAATCAACTGTGCGTTTTCTaGAACAGAGGTGACTGCAGCAGTGACCAGGTTTGG +
Preference number: 3 (lower is better)
Translates to: LLYIVRNQLCVF*NRGDCSSDQVW
Trigger: CCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAAAACGCACAGTTGATTTCTTACTATATACAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR GCA 72 bp AGAAATCAACTGTGCGTTTTCTGCAACAGAGGTGACTaGAGCAGTGACCAGGTTTGGGAATTATTGTTCTTT +
Preference number: 3 (lower is better)
Translates to: RNQLCVFCNRGD*SSDQVWELLFF
Trigger: AAAGAACAATAATTCCCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAAAACGCACAGTTGATTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR GCA 72 bp GAGAAACATTTCACTTTCAAATGCCTCAGCACCTGCTaGAATTCCAGGCTTTGGTTTGTACTTGTATCTCAG +
Preference number: 3 (lower is better)
Translates to: EKHFTFKCLSTC*NSRLWFVLVSQ
Trigger: CTGAGATACAAGTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAATGTTTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACCGGAATTATTGTTCTTaGCTCTCAATTCTGTATGAC +
Preference number: 3 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYRNYCS*LSILYD
Trigger: GTCATACAGAATTGAGAGCAAAGAACAATAATTCCG...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGGCCGGGCCGGAATTATaGTTCTTTGCTCTCAATTCT +
Preference number: 3 (lower is better)
Translates to: TRELLTLILRIRKEPEALAGPEL*FFALNS
Trigger: AGAATTGAGAGCAAAGAACAATAATTCCGGCCCGGC...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGTCTTTTCACCAGCCTTaGATGGATGTGCTAATCTTC +
Preference number: 3 (lower is better)
Translates to: PHNDPTRELLTLILRIRKSFHQP*MDVLIF
Trigger: GAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGATTCCAGGCTTTGGTTaGTACTTGTATCTCAGTCAC +
Preference number: 3 (lower is better)
Translates to: PHNDPTRELLTLILRIRKIPGFG*YLYLSH
Trigger: GTGACTGAGATACAAGTACAAACCAAAGCCTGGAAT...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp CATGTCAATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCACACAGCCACACCCATTaGTTTACTTACTGTCTACAG +
Preference number: 3 (lower is better)
Translates to: HVNTKSFHQPLMDVLIFSHSHTH*FTYCLQ
Trigger: CTGTAGACAGTAAGTAAACAAATGGGTGTGGCTGTG...TGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR-3UTR CAA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGCGGAATTATTGTTCTTaGCTCTCAATTCTGTATGAC +
Preference number: 3 (lower is better)
Translates to: PHNDPTRELLTLILRIRKRNYCS*LSILYD
Trigger: GTCATACAGAATTGAGAGCAAAGAACAATAATTCCG...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAGCAGCTTGCGGATCCTaGGCGTTGGCCGCGCAGGGG +
Preference number: 4 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREAACGS*ALAAQG
Trigger: CCCCTGCGCGGCCAACGCCCAGGATCCGCAAGCTGC...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000680255.1
CDS-3UTR CCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCTCTCCAATGGGCTGGTaGAGCTCGTGGGCGCGCAGC +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLASPMGW*SSWARS
Trigger: GCTGCGCGCCCACGAGCTCCACCAGCCCATTGGAGA...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000380523.8
ENST00000680255.1
CDS-3UTR CCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCGCAGCTTGCGGATCCTaGGCGTTGGCCGCGCAGGGG +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLAACGS*ALAAQG
Trigger: CCCCTGCGCGGCCAACGCCCAGGATCCGCAAGCTGC...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000380523.8
ENST00000680255.1
CDS-3UTR CCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCGGCTGGTGGAGCTCGTaGGCGCGCAGCTTGCGGATC +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLGWWSS*ARSLRI
Trigger: GATCCGCAAGCTGCGCGCCCACGAGCTCCACCAGCC...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000380523.8
ENST00000680255.1
CDS-3UTR CCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCTTTTCTCCAATGGGCTaGTGGAGCTCGTGGGCGCGC +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAFSPMG*WSSWAR
Trigger: GCGCGCCCACGAGCTCCACCAGCCCATTGGAGAAAA...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380523.8
ENST00000680255.1
CDS-3UTR CCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCGGAAGAAGGAGAGGCTaGGTACCCTGTGCCCTGAGC +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAGRRRG*VPCALS
Trigger: GCTCAGGGCACAGGGTACCCAGCCTCTCCTTCTTCC...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCTCTCCAATGGGCTGGTaGAGCTCGTGGGCGCGCAGC +
Preference number: 4 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLSPMGW*SSWARS
Trigger: GCTGCGCGCCCACGAGCTCCACCAGCCCATTGGAGA...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCCGCTCTGCATCCAGCTaGTGCTGCCGCCGTCGTTCT +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLRSASS*CCRRRS
Trigger: AGAACGACGGCGGCAGCAGCAGCTGGATGCAGAGCG...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCCGCTCTGCATCCAGCTaGTGCTGCCGCCGTCGTTCT +
Preference number: 4 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLRSASS*CCRRRS
Trigger: AGAACGACGGCGGCAGCAGCAGCTGGATGCAGAGCG...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCTGGAGCTCGGCTCACTaGAAGCTCCGCCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLWSSAH*KLRLLG
Trigger: ACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGCTCCA...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCCCATGGCTTGGATCTTaGCAGCACTGTCCCCGTACA +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAPWLGS*QHCPRT
Trigger: TGTACGGGGACAGTGCTGCCAAGATCCAAGCCATGG...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCTCTGCATCCAGCTGCTaGTGCCGCCGTCGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLSASSC*CRRRSS
Trigger: AGAAGAACGACGGCGGCAGCAGCAGCTGGATGCAGA...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCTGCCTCAGCACCTGCTaGAATTCCAGGCTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLACLSTC*NSRLWF
Trigger: AAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCA...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCAAATGCCTCAGCACCTaGTGCAATTCCAGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAKCLST*CNSRLW
Trigger: CCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTT...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACTTTTCTCCAATGGGCTaGTGGAGCTCGTGGGCGCGC +
Preference number: 4 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYFSPMG*WSSWAR
Trigger: GCGCGCCCACGAGCTCCACCAGCCCATTGGAGAAAA...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000680255.1
CDS-3UTR CCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCCATTCCTCACCTCCCTaGGAATGTCTCCCACTCTTT +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAHSSPP*ECLPLF
Trigger: AAAGAGTGGGAGACATTCCCAGGGAGGTGAGGAATG...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000380523.8
CDS-3UTR GCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCACTGACCGTGTGGCTTaGAGTGCCAAAGATATTCAC +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLATDRVA*SAKDIH
Trigger: GTGAATATCTTTGGCACTGCAAGCCACACGGTCAGT...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCCCATGGCTTGGATCTTaGCAGCACTGTCCCCGTACA +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLPWLGS*QHCPRT
Trigger: TGTACGGGGACAGTGCTGCCAAGATCCAAGCCATGG...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp CGGGCCGGAATTATTGTTCTTTGCTCTCAATTCTGTATGACATCTAAGCTCTGTGGAAGAAGGAGAGGCTaGGTACCCTGTGCCCTGAGC +
Preference number: 4 (lower is better)
Translates to: RAGIIVLCSQFCMTSKLCGRRRG*VPCALS
Trigger: GCTCAGGGCACAGGGTACCCAGCCTCTCCTTCTTCC...ACAGAGCTTAGATGTCATACAGAATTGAGAGCAAAGAACAATAATTCCGGCCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 72 bp ACTGTCTACAGCTGCTTTCACACTACAAAGGGAGGGTaGAGTAGTCACAACACTGACCGTGTGGCTTGCAGT +
Preference number: 4 (lower is better)
Translates to: TVYSCFHTTKGG*SSHNTDRVACS
Trigger: ACTGCAAGCCACACGGTCAGTGTTGTGACTACTCAACCCTCCCTTTGTAGTGTGAAAGCAGCTGTAGACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCCAAGCCTTCAGGGACTaGACAGTAACTTTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAQAFRD*TVTFLQ
Trigger: TTGGAGAAAAGTTACTGTTCAGTCCCTGAAGGCTTG...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCAAGAGAGCTGATGGTTaGTGCAGATTTAGATGCCCT +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAKRADG*CRFRCP
Trigger: AGGGCATCTAAATCTGCAGCAACCATCAGCTCTCTT...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000380523.8
CDS-3UTR GCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCTTTGAGACGGAGTCTTaGTCTTTCTCTAGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAFETES*SFSRLE
Trigger: CTCCAACCTAGAGAAAGAGCAAGACTCCGTCTCAAA...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCTGCAACAGAGGTGACTaGAGCAGTGACCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLCNRGD*SSDQVW
Trigger: CCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCA...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCGTAACTTTTCTCCAATaGGCTGGTGGAGCTCGTGGG +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLVTFLQ*AGGARG
Trigger: CCCACGAGCTCCACCAGCCCATTGGAGAAAAGTTAC...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380523.8
ENST00000680255.1
CDS-3UTR TCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCAGTCCAAATGGGTGCTaGAACTCCCTGGGAATGTCT +
Preference number: 4 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLSPNGC*NSLGMS
Trigger: AGACATTCCCAGGGAGTTTCAGCACCCATTTGGACT...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCGCTCTCAATTCTGTATaGCATCTAAGCTCTGTAGAC +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAALNSV*HLSSVD
Trigger: GTCTACAGAGCTTAGATGTCATACAGAATTGAGAGC...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCGCTGGCTTTTATAAATaGCCTGCTCCATCAGCTTTT +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAAGFYK*PAPSAF
Trigger: AAAAGCTGATGGAGCAGGTCATTTATAAAAGCCAGC...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAACTGACCGTGTGGCTTaGAGTGCCAAAGATATTCAC +
Preference number: 4 (lower is better)
Translates to: DRHGDFFRGGYKSPLRRETDRVA*SAKDIH
Trigger: GTGAATATCTTTGGCACTGCAAGCCACACGGTCAGT...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCTCTGTAGACCAAATCTaGCCTGCAGTCTGTTTTTGT +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLASVDQI*PAVCFC
Trigger: ACAAAAACAGACTGCAGGCCAGATTTGGTCTACAGA...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCAACATGGGCTCACCCTaGCAATGTACTGTAATAACT +
Preference number: 4 (lower is better)
Translates to: SHNTDRVACSAKDIHSLANMGSP*QCTVIT
Trigger: AGTTATTACAGTACATTGCCAGGGTGAGCCCATGTT...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACAGTCCAAATGGGTGCTaGAACTCCCTGGGAATGTCT +
Preference number: 4 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYSPNGC*NSLGMS
Trigger: AGACATTCCCAGGGAGTTTCAGCACCCATTTGGACT...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCGCCCTTTATAGAACATaGATCCCTCTCCACTACAGG +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLALYRT*IPLHYR
Trigger: CCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGC...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCCCGTGTGGCTTGCAGTaGCAAAGATATTCACTCTCT +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLPCGLQ*QRYSLS
Trigger: AGAGAGTGAATATCTTTGGCACTGCAAGCCACACGG...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAATTTGAGACGGAGTCTTaGTCTTTCTCTAGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREFETES*SFSRLE
Trigger: CTCCAACCTAGAGAAAGAGCAAGACTCCGTCTCAAA...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp TTCTGCAACAGAGGTGACTGCAGCAGTGACCAGGTTTGGGAATTATTGTTCTTTGGTGCTGAAACTCCCTaGGAATGTCTCCCACTCTTT +
Preference number: 4 (lower is better)
Translates to: FCNRGDCSSDQVWELLFFGAETP*ECLPLF
Trigger: AAAGAGTGGGAGACATTCCCAGGGAGTTTCAGCACC...AAAGAACAATAATTCCCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGCCATGGCTTGGATCTTaGCAGCACTGTCCCCGTACA +
Preference number: 4 (lower is better)
Translates to: PHNDPTRELLTLILRIRKPWLGS*QHCPRT
Trigger: TGTACGGGGACAGTGCTGCCAAGATCCAAGCCATGG...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGGGAAGAAGGAGAGGCTaGGTACCCTGTGCCCTGAGC +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALGRRRG*VPCALS
Trigger: GCTCAGGGCACAGGGTACCCAGCCTCTCCTTCTTCC...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCGTCTCACTACACACTTaGCTCATTTTTAGTGGGGGC +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLVSLHT*LIFSGG
Trigger: GCCCCCACTAAAAATGAGCCAAGTGTGTAGTGAGAC...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCACAACACTGACCGTGTaGCTTGCAGTGCCAAAGATA +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLTTLTV*LAVPKI
Trigger: TATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGT...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACCGGGTTTCATCATGTTaGCCAGGATGGTCTCCATCT +
Preference number: 4 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYRVSSC*PGWSPS
Trigger: AGATGGAGACCATCCTGGCCAACATGATGAAACCCG...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATCTCTGTTGCCCAGGCTaGAGCTCGGCTCACTGCAAG +
Preference number: 4 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHLCCPG*SSAHCK
Trigger: CTTGCAGTGAGCCGAGCTCCAGCCTGGGCAACAGAG...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACTCTGTTGCCCAGGCTaGAGCTCGGCTCACTGCAAG +
Preference number: 4 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQLCCPG*SSAHCK
Trigger: CTTGCAGTGAGCCGAGCTCCAGCCTGGGCAACAGAG...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCCAAGCCTTCAGGGACTaGACAGTAACTTTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLQAFRD*TVTFLQ
Trigger: TTGGAGAAAAGTTACTGTTCAGTCCCTGAAGGCTTG...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAATCTGCATCCAGCTGCTaGTGCCGCCGTCGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQSASSC*CRRRSS
Trigger: AGAAGAACGACGGCGGCAGCAGCAGCTGGATGCAGA...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCAGAGCTGATGGTTGCTaGAGATTTAGATGCCCTTTG +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLRADGC*RFRCPL
Trigger: CAAAGGGCATCTAAATCTGCAGCAACCATCAGCTCT...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000380523.8
CDS-3UTR GCA 90 bp CGGGCCGGAATTATTGTTCTTTGCTCTCAATTCTGTATGACATCTAAGCTCTGTTGCCTCAGCACCTGCTaGAATTCCAGGCTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: RAGIIVLCSQFCMTSKLCCLSTC*NSRLWF
Trigger: AAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCA...ACAGAGCTTAGATGTCATACAGAATTGAGAGCAAAGAACAATAATTCCGGCCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCAGTCCAAATGGGTGCTaGAACTCTCAAAGAAAAGAG +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLSPNGC*NSQRKE
Trigger: CTCTTTTCTTTGAGAGTTTCAGCACCCATTTGGACT...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000380523.8
CDS-3UTR TCA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACCTGAGTGAGATAGATTaGGTCATATGCGGTTCCAAG +
Preference number: 4 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYLSEID*VICGSK
Trigger: CTTGGAACCGCATATGACTCAATCTATCTCACTCAG...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS-3UTR TCA 90 bp TTCTGCAACAGAGGTGACTGCAGCAGTGACCAGGTTTGGGAATTATTGTTCTTTGTGATTTTCATTCCATaGGAGGTGCAGTTGGCAAAC +
Preference number: 4 (lower is better)
Translates to: FCNRGDCSSDQVWELLFFVIFIP*EVQLAN
Trigger: GTTTGCCAACTGCACCTCTCATGGAATGAAAATCAC...AAAGAACAATAATTCCCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCAAAATGTCAGGCAGGTaGTTTTCATTCCATGAGAGG +
Preference number: 4 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLKMSGR*FSFHER
Trigger: CCTCTCATGGAATGAAAATCACCTGCCTGACATTTT...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCGCTCTCAATTCTGTATaGCATCTAAGCTCTGTAGAC +
Preference number: 4 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLALNSV*HLSSVD
Trigger: GTCTACAGAGCTTAGATGTCATACAGAATTGAGAGC...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGACAGGCATGAACCATTaGGCCCGGCCGCCTGTTTTT +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALTGMNH*ARPPVF
Trigger: AAAAACAGGCGGCCGGGCGCAATGGTTCATGCCTGT...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGCAACTGTGCGTTTTCTaGAACAGAGGTGACTGCAGC +
Preference number: 4 (lower is better)
Translates to: PHNDPTRELLTLILRIRKQLCVF*NRGDCS
Trigger: GCTGCAGTCACCTCTGTTGCAGAAAACGCACAGTTG...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAGTAAGAAATCAACTGTaGGTTTTCTGCAACAGAGGT +
Preference number: 4 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREVRNQL*VFCNRG
Trigger: ACCTCTGTTGCAGAAAACGCACAGTTGATTTCTTAC...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGAAATGCCTCAGCACCTaGTGCAATTCCAGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: PHNDPTRELLTLILRIRKKCLST*CNSRLW
Trigger: CCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTT...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCCATTTCACTTTCAAATaGCTCAGCACCTGCTGCAAT +
Preference number: 4 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLHFTFK*LSTCCN
Trigger: ATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAATG...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCTCTGTAGACCAAATCTaGCCTGCAGTCTGTTTTTGT +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLSVDQI*PAVCFC
Trigger: ACAAAAACAGACTGCAGGCCAGATTTGGTCTACAGA...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCTGCTGCAGATTTAGATaGCCTTTGGTCTTTAATGGT +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLCCRFR*PLVFNG
Trigger: ACCATTAAAGACCAAAGGGCATCTAAATCTGCAGCA...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000380523.8
CDS-3UTR GCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGTGCAACAGAGGTGACTaGAGCAGTGACCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALCNRGD*SSDQVW
Trigger: CCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCA...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATGTAACTTTTCTCCAATaGGCTGGTGGAGCTCGTGGG +
Preference number: 4 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHVTFLQ*AGGARG
Trigger: CCCACGAGCTCCACCAGCCCATTGGAGAAAAGTTAC...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000680255.1
CDS-3UTR CCA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGACAACACTGACCGTGTaGCTTGCAGTGCCAAAGATA +
Preference number: 4 (lower is better)
Translates to: PHNDPTRELLTLILRIRKTTLTV*LAVPKI
Trigger: TATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGT...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACAACATGGGCTCACCCTaGCAATGTACTGTAATAACT +
Preference number: 4 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYNMGSP*QCTVIT
Trigger: AGTTATTACAGTACATTGCCAGGGTGAGCCCATGTT...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp CATGTCAATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCACAACTGTGCGTTTTCTaGAACAGAGGTGACTGCAGC +
Preference number: 4 (lower is better)
Translates to: HVNTKSFHQPLMDVLIFSQLCVF*NRGDCS
Trigger: GCTGCAGTCACCTCTGTTGCAGAAAACGCACAGTTG...TGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCGGTATAAGAGTCCTTTaGGAAGAGAAACATTTCACT +
Preference number: 4 (lower is better)
Translates to: WPFIEHASLSTTGSGICLGIRVL*EEKHFT
Trigger: AGTGAAATGTTTCTCTTCGCAAAGGACTCTTATACC...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp CATGTCAATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTGCTGAAACTCCCTaGGAATGTCTCCCACTCTTT +
Preference number: 4 (lower is better)
Translates to: HVNTKSFHQPLMDVLIFSGAETP*ECLPLF
Trigger: AAAGAGTGGGAGACATTCCCAGGGAGTTTCAGCACC...TGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp CCGCACAATGACCCCACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGTTTTCTCCAATGGGCTaGTGGAGTGTTTCAAGGAGA +
Preference number: 4 (lower is better)
Translates to: PHNDPTRELLTLILRIRKFSPMG*WSVSRR
Trigger: TCTCCTTGAAACACTCCACCAGCCCATTGGAGAAAA...CTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGTGGGGTCATTGTGCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS-3UTR CCA 90 bp CGGGCCGGAATTATTGTTCTTTGCTCTCAATTCTGTATGACATCTAAGCTCTGTGTAACTTTTCTCCAATaGGCTGGTGGAGTGTTTCAA +
Preference number: 4 (lower is better)
Translates to: RAGIIVLCSQFCMTSKLCVTFLQ*AGGVFQ
Trigger: TTGAAACACTCCACCAGCCCATTGGAGAAAAGTTAC...ACAGAGCTTAGATGTCATACAGAATTGAGAGCAAAGAACAATAATTCCGGCCCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS-3UTR CCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGCGGGTTTCATCATGTTaGCCAGGATGGTCTCCATCT +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALRVSSC*PGWSPS
Trigger: AGATGGAGACCATCCTGGCCAACATGATGAAACCCG...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGCTTCTCAGGTCAACATaGGCTCACCCTGGCAATGTA +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALLLRST*AHPGNV
Trigger: TACATTGCCAGGGTGAGCCCATGTTGACCTGAGAAG...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 72 bp CATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTaGCGAAGAGAAACATTTCACTTTCAAATGCCTCAG +
Preference number: 4 (lower is better)
Translates to: HGDFFRGGYKSP*RRETFHFQMPQ
Trigger: CTGAGGCATTTGAAAGTGAAATGTTTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGGCCCTTTATAGAACATaGATCCCTCTCCACTACAGG +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALALYRT*IPLHYR
Trigger: CCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGC...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATCCGTGTGGCTTGCAGTaGCAAAGATATTCACTCTCT +
Preference number: 4 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHPCGLQ*QRYSLS
Trigger: AGAGAGTGAATATCTTTGGCACTGCAAGCCACACGG...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACCGTGTGGCTTGCAGTaGCAAAGATATTCACTCTCT +
Preference number: 4 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQPCGLQ*QRYSLS
Trigger: AGAGAGTGAATATCTTTGGCACTGCAAGCCACACGG...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp TTCTGCAACAGAGGTGACTGCAGCAGTGACCAGGTTTGGGAATTATTGTTCTTTGGTATAAGAGTCCTTTaGGAAGAGAAACATTTCACT +
Preference number: 4 (lower is better)
Translates to: FCNRGDCSSDQVWELLFFGIRVL*EEKHFT
Trigger: AGTGAAATGTTTCTCTTCGCAAAGGACTCTTATACC...AAAGAACAATAATTCCCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAAGTCTCACTACACACTTaGCTCATTTTTAGTGGGGGC +
Preference number: 4 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQVSLHT*LIFSGG
Trigger: GCCCCCACTAAAAATGAGCCAAGTGTGTAGTGAGAC...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATGTCTCACTACACACTTaGCTCATTTTTAGTGGGGGC +
Preference number: 4 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHVSLHT*LIFSGG
Trigger: GCCCCCACTAAAAATGAGCCAAGTGTGTAGTGAGAC...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CCA 90 bp CATGTCAATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAACAACACTGACCGTGTaGCTTGCAGTGCCAAAGATA +
Preference number: 4 (lower is better)
Translates to: HVNTKSFHQPLMDVLIFSTTLTV*LAVPKI
Trigger: TATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGT...TGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp CATGTCAATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGTGATTTTCATTCCATaGGAGGTGCAGTTGGCAAAC +
Preference number: 4 (lower is better)
Translates to: HVNTKSFHQPLMDVLIFSVIFIP*EVQLAN
Trigger: GTTTGCCAACTGCACCTCTCATGGAATGAAAATCAC...TGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 72 bp GAGAAACATGTCAATACTAAATCTTTTCACCAGCCTTaGATGGATGTGCTAATCTTCTCAGGTCAACATGGG +
Preference number: 4 (lower is better)
Translates to: EKHVNTKSFHQP*MDVLIFSGQHG
Trigger: CCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATGTTTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 72 bp TCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACTaGTATCTCAGTCACAGTTATTTTATAGTTAGGCAT +
Preference number: 4 (lower is better)
Translates to: SAPAAIPGFGLY*YLSHSYFIVRH
Trigger: ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 72 bp AATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTaGTACTTGTATCTCAGTCACAGTTATTTTATAGTT +
Preference number: 4 (lower is better)
Translates to: NASAPAAIPGFG*YLYLSHSYFIV
Trigger: AACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
3UTR CAA 72 bp TTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTaGGTTTGTACTTGTATCTCAGTCACAGTTATTTTA +
Preference number: 4 (lower is better)
Translates to: FQMPQHLLQFQA*VCTCISVTVIL
Trigger: TAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAAAAAATGTCAGGCAGGTaGTTTTCATTCCATGAGAGG +
Preference number: 4 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQKMSGR*FSFHER
Trigger: CCTCTCATGGAATGAAAATCACCTGCCTGACATTTT...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR GCA 90 bp CGGGCCGGAATTATTGTTCTTTGCTCTCAATTCTGTATGACATCTAAGCTCTGTGAATCTCTCTGTACATaGAATAATAACCCTATCACA +
Preference number: 4 (lower is better)
Translates to: RAGIIVLCSQFCMTSKLCESLCT*NNNPIT
Trigger: TGTGATAGGGTTATTATTGCATGTACAGAGAGATTC...ACAGAGCTTAGATGTCATACAGAATTGAGAGCAAAGAACAATAATTCCGGCCCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS-3UTR GCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGCATTTCACTTTCAAATaGCTCAGCACCTGCTGCAAT +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALHFTFK*LSTCCN
Trigger: ATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAATG...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR TCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGGGTGAGAAATCTGAGTaGGATAGATTGAGTCATATG +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALGEKSE*DRLSHM
Trigger: CATATGACTCAATCTATCTCACTCAGATTTCTCACC...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS-3UTR TCA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGCTGCAGCAAAATAAGTaGAGGTATGGTGAGAAATCT +
Preference number: 4 (lower is better)
Translates to: TRELLTLILRIRKEPEALLQQNK*RYGEKS
Trigger: AGATTTCTCACCATACCTTCACTTATTTTGCTGCAG...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS-3UTR GCA 90 bp CATGTCAATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGTAAGAAATCAACTGTaGGTTTTCTGCAACAGAGGT +
Preference number: 4 (lower is better)
Translates to: HVNTKSFHQPLMDVLIFSVRNQL*VFCNRG
Trigger: ACCTCTGTTGCAGAAAACGCACAGTTGATTTCTTAC...TGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATTGACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCTGCGGATCCTGGGCGTaGGCCGCGCAGGGGCCTAGT +
Preference number: 5 (lower is better)
Translates to: WPFIEHASLSTTGSGICLCGSWA*AAQGPS
Trigger: ACTAGGCCCCTGCGCGGCCAACGCCCAGGATCCGCA...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380523.8
ENST00000680255.1
CDS CCA 90 bp ACAAGCCTTCAGGGACTGAACAGTAACTTTTCTCCAATGGGCTGGTaGAGCTTAACACGGTGGTTCTCGGCACCCCAGAATCACCTGGGC +
Preference number: 5 (lower is better)
Translates to: TSLQGLNSNFSPMGW*SLTRWFSAPQNHLG
Trigger: GCCCAGGTGATTCTGGGGTGCCGAGAACCACCGTGTTAAGCTCCACCAGCCCATTGGAGAAAAGTTACTGTTCAGTCCCTGAAGGCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000332885.7
CDS CCA 90 bp GGCACAAGCCTTCAGGGACTGAACAGTAACTTTTCTCCAATGGGCTaGTGGAGCTTAACACGGTGGTTCTCGGCACCCCAGAATCACCTG +
Preference number: 5 (lower is better)
Translates to: GTSLQGLNSNFSPMG*WSLTRWFSAPQNHL
Trigger: CAGGTGATTCTGGGGTGCCGAGAACCACCGTGTTAAGCTCCACCAGCCCATTGGAGAAAAGTTACTGTTCAGTCCCTGAAGGCTTGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000332885.7
CDS GCA 90 bp CGGGGATCAGAATTCTTAAAGAGTCGTCCAGTGATTCGGAAGCACTaGAGAGCTGAGAGCCTCTGGGACTGGTCCCCTCTCACAATTAAC +
Preference number: 5 (lower is better)
Translates to: RGSEFLKSRPVIRKH*RAESLWDWSPLTIN
Trigger: GTTAATTGTGAGAGGGGACCAGTCCCAGAGGCTCTCAGCTCTGCAGTGCTTCCGAATCACTGGACGACTCTTTAAGAATTCTGATCCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000332885.7
CDS-3UTR CAA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCACGGGTTTCATCATGTaGGCCAGGATGGTCTCCATC +
Preference number: 5 (lower is better)
Translates to: SHNTDRVACSAKDIHSLATGFIM*ARMVSI
Trigger: GATGGAGACCATCCTGGCCAACATGATGAAACCCGT...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS GCA 90 bp TGCCTCATTTCTGGCTTGTCAGCAACCACCCAGAACACAGGTACATaGCAGCAGAACTGGAGCCATTTCAGACTGGTCTTCTCTCTTCGT +
Preference number: 5 (lower is better)
Translates to: CLISGLSATTQNTGT*QQNWSHFRLVFSLR
Trigger: ACGAAGAGAGAAGACCAGTCTGAAATGGCTCCAGTTCTGCTGGCATGTACCTGTGTTCTGGGTGGTTGCTGACAAGCCAGAAATGAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460203.1
CDS-3UTR CAA 90 bp AATACTAAATCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAATGCGGATCCTGGGCGTaGGCCGCGCAGGGGCCTAGT +
Preference number: 5 (lower is better)
Translates to: NTKSFHQPLMDVLIFSGQCGSWA*AAQGPS
Trigger: ACTAGGCCCCTGCGCGGCCAACGCCCAGGATCCGCA...TTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGATTTAGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000680255.1
CDS-3UTR CAA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCTCCATGGCTTGGATCTaGGCAGCACTGTCCCCGTAC +
Preference number: 5 (lower is better)
Translates to: WPFIEHASLSTTGSGICLSMAWI*AALSPY
Trigger: GTACGGGGACAGTGCTGCCAAGATCCAAGCCATGGA...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCTCCATGGCTTGGATCTaGGCAGCACTGTCCCCGTAC +
Preference number: 5 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLSMAWI*AALSPY
Trigger: GTACGGGGACAGTGCTGCCAAGATCCAAGCCATGGA...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACTACAGGCATGAACCATaGCGCCCGGCCGCCTGTTTT +
Preference number: 5 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYYRHEP*RPAACF
Trigger: AAAACAGGCGGCCGGGCGCAATGGTTCATGCCTGTA...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCTGCCCGGCTCATTTTTaGTATTTTAGTAGCGACGGG +
Preference number: 5 (lower is better)
Translates to: SHNTDRVACSAKDIHSLACPAHF*YFSSDG
Trigger: CCCGTCGCTACTAAAATACAAAAAATGAGCCGGGCA...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCCACAGCCACACCCATTaGTTTACTTACTGTCTACAG +
Preference number: 5 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAHSHTH*FTYCLQ
Trigger: CTGTAGACAGTAAGTAAACAAATGGGTGTGGCTGTG...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCACGGGTTTCATCATGTaGGCCAGGATGGTCTCCATC +
Preference number: 5 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLTGFIM*ARMVSI
Trigger: GATGGAGACCATCCTGGCCAACATGATGAAACCCGT...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS GCA 90 bp TGTAGCACAACCGAGGGAAAGCACAAACTTGATGTATGCCATGAATaGCTCATTTCTGGCTTGTCAGCAACCACCCAGAACACAGGTACA +
Preference number: 5 (lower is better)
Translates to: CSTTEGKHKLDVCHE*LISGLSATTQNTGT
Trigger: TGTACCTGTGTTCTGGGTGGTTGCTGACAAGCCAGAAATGAGGCATTCATGGCATACATCAAGTTTGTGCTTTCCCTCGGTTGTGCTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460203.1
CDS-3UTR CAA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAGCCGGGCCGGAATTATaGTTCTTTGCTCTCAATTCT +
Preference number: 5 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREAGPEL*FFALNS
Trigger: AGAATTGAGAGCAAAGAACAATAATTCCGGCCCGGC...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp AGTCACAACACTGACCGTGTGGCTTGCAGTGCCAAAGATATTCACTCTCTGGCCGGCTTTGGTTTGTACTaGTATCTCAGTCACAGTTAT +
Preference number: 5 (lower is better)
Translates to: SHNTDRVACSAKDIHSLAGFGLY*YLSHSY
Trigger: ATAACTGTGACTGAGATACAAGTACAAACCAAAGCC...GGCCAGAGAGTGAATATCTTTGGCACTGCAAGCCACACGGTCAGTGTTGTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS GCA 90 bp TCTCCAATGGGCTGGTGGAGTGTTTCAAGGAGATCTGCTGGACACTaGAGCAAAATAAGTGAAGGTATGGTGAGAAATCTGAGTGAGATA +
Preference number: 5 (lower is better)
Translates to: SPMGWWSVSRRSAGH*SKISEGMVRNLSEI
Trigger: TATCTCACTCAGATTTCTCACCATACCTTCACTTATTTTGCTGCAGTGTCCAGCAGATCTCCTTGAAACACTCCACCAGCCCATTGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS-3UTR CAA 90 bp CCAGGCTTTGGTTTGTACTTGTATCTCAGTCACAGTTATTTTATAGTTAGGCATTCCATGGCTTGGATCTaGGCAGCACTGTCCCCGTAC +
Preference number: 5 (lower is better)
Translates to: PGFGLYLYLSHSYFIVRHSMAWI*AALSPY
Trigger: GTACGGGGACAGTGCTGCCAAGATCCAAGCCATGGA...ATGCCTAACTATAAAATAACTGTGACTGAGATACAAGTACAAACCAAAGCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCCACAGCCACACCCATTaGTTTACTTACTGTCTACAG +
Preference number: 5 (lower is better)
Translates to: WPFIEHASLSTTGSGICLHSHTH*FTYCLQ
Trigger: CTGTAGACAGTAAGTAAACAAATGGGTGTGGCTGTG...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380523.8
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp ATTTCACTTTCAAATGCCTCAGCACCTGCTGCAATTCCAGGCTTTGGTTTGTACTGCCCGGCTCATTTTTaGTATTTTAGTAGCGACGGG +
Preference number: 5 (lower is better)
Translates to: ISLSNASAPAAIPGFGLYCPAHF*YFSSDG
Trigger: CCCGTCGCTACTAAAATACAAAAAATGAGCCGGGCA...GTACAAACCAAAGCCTGGAATTGCAGCAGGTGCTGAGGCATTTGAAAGTGAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAAATTCCAGGCTTTGGTTaGTACTTGTATCTCAGTCAC +
Preference number: 5 (lower is better)
Translates to: DRHGDFFRGGYKSPLRREIPGFG*YLYLSH
Trigger: GTGACTGAGATACAAGTACAAACCAAAGCCTGGAAT...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS GCA 90 bp ATGAATAATTGTAGCACAACCGAGGGAAAGCACAAACTTGATGTATaGCATGAATGCCTCATTTCTGGCTTGTCAGCAACCACCCAGAAC +
Preference number: 5 (lower is better)
Translates to: MNNCSTTEGKHKLDV*HECLISGLSATTQN
Trigger: GTTCTGGGTGGTTGCTGACAAGCCAGAAATGAGGCATTCATGGCATACATCAAGTTTGTGCTTTCCCTCGGTTGTGCTACAATTATTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460203.1
CDS-3UTR CAA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCTCTTTTCACCAGCCTTaGATGGATGTGCTAATCTTC +
Preference number: 5 (lower is better)
Translates to: WPFIEHASLSTTGSGICLSFHQP*MDVLIF
Trigger: GAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp GACCGGCATGGTGATTTCTTTAGGGGAGGGTATAAGAGTCCTTTGCGAAGAGAACGGAATTATTGTTCTTaGCTCTCAATTCTGTATGAC +
Preference number: 5 (lower is better)
Translates to: DRHGDFFRGGYKSPLRRERNYCS*LSILYD
Trigger: GTCATACAGAATTGAGAGCAAAGAACAATAATTCCG...TTCTCTTCGCAAAGGACTCTTATACCCTCCCCTAAAGAAATCACCATGCCGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCGGCTTTGGTTTGTACTaGTATCTCAGTCACAGTTAT +
Preference number: 5 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLGFGLY*YLSHSY
Trigger: ATAACTGTGACTGAGATACAAGTACAAACCAAAGCC...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp TTCTGCAACAGAGGTGACTGCAGCAGTGACCAGGTTTGGGAATTATTGTTCTTTGGGTATAAGAGTCCTTaGCGAAGAGAAACATTTCAC +
Preference number: 5 (lower is better)
Translates to: FCNRGDCSSDQVWELLFFGYKSP*RRETFH
Trigger: GTGAAATGTTTCTCTTCGCAAAGGACTCTTATACCC...AAAGAACAATAATTCCCAAACCTGGTCACTGCTGCAGTCACCTCTGTTGCAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp TGGCCCTTTATAGAACATGCATCCCTCTCCACTACAGGTAGTGGTATTTGTCTCACGTGTCAACATTTATaGAGTATTTACCGTGTAGCC +
Preference number: 5 (lower is better)
Translates to: WPFIEHASLSTTGSGICLTCQHL*SIYRVA
Trigger: GGCTACACGGTAAATACTCAATAAATGTTGACACGT...GAGACAAATACCACTACCTGTAGTGGAGAGGGATGCATGTTCTATAAAGGGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000680255.1
CDS-3UTR CAA 90 bp TCTTTTCACCAGCCTTTGATGGATGTGCTAATCTTCTCAGGTCAACATGGGCTCCGGAATTATTGTTCTTaGCTCTCAATTCTGTATGAC +
Preference number: 5 (lower is better)
Translates to: SFHQPLMDVLIFSGQHGLRNYCS*LSILYD
Trigger: GTCATACAGAATTGAGAGCAAAGAACAATAATTCCG...GAGCCCATGTTGACCTGAGAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp CGGGCCGGAATTATTGTTCTTTGCTCTCAATTCTGTATGACATCTAAGCTCTGTTCTTTTCACCAGCCTTaGATGGATGTGCTAATCTTC +
Preference number: 5 (lower is better)
Translates to: RAGIIVLCSQFCMTSKLCSFHQP*MDVLIF
Trigger: GAAGATTAGCACATCCATCAAAGGCTGGTGAAAAGA...ACAGAGCTTAGATGTCATACAGAATTGAGAGCAAAGAACAATAATTCCGGCCCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGATTCCAGGCTTTGGTTaGTACTTGTATCTCAGTCAC +
Preference number: 5 (lower is better)
Translates to: TRELLTLILRIRKEPEALIPGFG*YLYLSH
Trigger: GTGACTGAGATACAAGTACAAACCAAAGCCTGGAAT...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS-3UTR CAA 90 bp ACGAGAGAATTATTAACACTCATTTTAAGGATAAGGAAGGAACCAGAAGCACTGGGGTATAAGAGTCCTTaGCGAAGAGAAACATTTCAC +
Preference number: 5 (lower is better)
Translates to: TRELLTLILRIRKEPEALGYKSP*RRETFH
Trigger: GTGAAATGTTTCTCTTCGCAAAGGACTCTTATACCC...CAGTGCTTCTGGTTCCTTCCTTATCCTTAAAATGAGTGTTAATAATTCTCTCGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000477386.2
ENST00000680255.1
CDS TCA 90 bp AGCAAAATAAGTGAAGGTATGGTGAGAAATCTGAGTGAGATAGATTaGGTCATATGCGGTTCCAAGGAATCTCTCTGTACATGCAATAAT +
Preference number: 5 (lower is better)
Translates to: SKISEGMVRNLSEID*VICGSKESLCTCNN
Trigger: ATTATTGCATGTACAGAGAGATTCCTTGGAACCGCATATGACTCAATCTATCTCACTCAGATTTCTCACCATACCTTCACTTATTTTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS GCA 72 bp GAATTCTTAAAGAGTCGTCCAGTGATTCGGAAGCACTaGAGAGCTGAGAGCCTCTGGGACTGGTCCCCTCTC +
Preference number: 6 (lower is better)
Translates to: EFLKSRPVIRKH*RAESLWDWSPL
Trigger: GAGAGGGGACCAGTCCCAGAGGCTCTCAGCTCTGCAGTGCTTCCGAATCACTGGACGACTCTTTAAGAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000332885.7
CDS CCA 72 bp AACTTTTCTCCAATGGGCTGGTGGAGCTTAACACGGTaGTTCTCGGCACCCCAGAATCACCTGGGCAGCTTT +
Preference number: 6 (lower is better)
Translates to: NFSPMGWWSLTR*FSAPQNHLGSF
Trigger: AAAGCTGCCCAGGTGATTCTGGGGTGCCGAGAACCACCGTGTTAAGCTCCACCAGCCCATTGGAGAAAAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000332885.7
CDS CCA 72 bp CTTCAGGGACTGAACAGTAACTTTTCTCCAATGGGCTaGTGGAGCTTAACACGGTGGTTCTCGGCACCCCAG +
Preference number: 6 (lower is better)
Translates to: LQGLNSNFSPMG*WSLTRWFSAPQ
Trigger: CTGGGGTGCCGAGAACCACCGTGTTAAGCTCCACCAGCCCATTGGAGAAAAGTTACTGTTCAGTCCCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000332885.7
CDS CCA 72 bp CAGGGACTGAACAGTAACTTTTCTCCAATGGGCTGGTaGAGCTTAACACGGTGGTTCTCGGCACCCCAGAAT +
Preference number: 6 (lower is better)
Translates to: QGLNSNFSPMGW*SLTRWFSAPQN
Trigger: ATTCTGGGGTGCCGAGAACCACCGTGTTAAGCTCCACCAGCCCATTGGAGAAAAGTTACTGTTCAGTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000332885.7
CDS CAA 90 bp GGAAAGCACAAACTTGATGTATGCCATGAATGCCTCATTTCTGGCTaGTCAGCAACCACCCAGAACACAGGTACATGCCAGCAGAACTGG +
Preference number: 6 (lower is better)
Translates to: GKHKLDVCHECLISG*SATTQNTGTCQQNW
Trigger: CCAGTTCTGCTGGCATGTACCTGTGTTCTGGGTGGTTGCTGACAAGCCAGAAATGAGGCATTCATGGCATACATCAAGTTTGTGCTTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460203.1
CDS GCA 72 bp TTTCAGACTGGTCTTCTCTCTTCGTCGCACATCCCTTaGCCCATGACAAATGTAATCCTGAAGTTACTGGAC +
Preference number: 6 (lower is better)
Translates to: FQTGLLSSSHIP*PMTNVILKLLD
Trigger: GTCCAGTAACTTCAGGATTACATTTGTCATGGGGCAAGGGATGTGCGACGAAGAGAGAAGACCAGTCTGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460203.1
CDS CAA 72 bp ATTTCAGACTGGTCTTCTCTCTTCGTCGCACATCCCTaGCCCCATGACAAATGTAATCCTGAAGTTACTGGA +
Preference number: 6 (lower is better)
Translates to: ISDWSSLFVAHP*PHDKCNPEVTG
Trigger: TCCAGTAACTTCAGGATTACATTTGTCATGGGGCAAGGGATGTGCGACGAAGAGAGAAGACCAGTCTGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000460203.1
CDS GCA 72 bp GGTGCTGAAACTCTCAAAGAAAAGAGAGCTGATGGTTaGTGCAGATTTAGATGCCCTTTGGTCTTTAATGGT +
Preference number: 6 (lower is better)
Translates to: GAETLKEKRADG*CRFRCPLVFNG
Trigger: ACCATTAAAGACCAAAGGGCATCTAAATCTGCAGCAACCATCAGCTCTCTTTTCTTTGAGAGTTTCAGCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000380523.8
CDS TCA 72 bp AGTGAAGGTATGGTGAGAAATCTGAGTGAGATAGATTaGGTCATATGCGGTTCCAAGGAATCTCTCTGTACA +
Preference number: 6 (lower is better)
Translates to: SEGMVRNLSEID*VICGSKESLCT
Trigger: TGTACAGAGAGATTCCTTGGAACCGCATATGACTCAATCTATCTCACTCAGATTTCTCACCATACCTTCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477386.2
CDS GCA 72 bp GCTGAAACTCTCAAAGAAAAGAGAGCTGATGGTTGCTaGAGATTTAGATGCCCTTTGGTCTTTAATGGTCTT +
Preference number: 6 (lower is better)
Translates to: AETLKEKRADGC*RFRCPLVFNGL
Trigger: AAGACCATTAAAGACCAAAGGGCATCTAAATCTGCAGCAACCATCAGCTCTCTTTTCTTTGAGAGTTTCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000380523.8