RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GDPD1 (Homo sapiens)

Ensembl gene IDs: ENSG00000153982

Ensembl transcript IDs: ENST00000284116.9, ENST00000578026.5, ENST00000579020.5, ENST00000579076.1, ENST00000581140.5, ENST00000581276.5, ENST00000583543.1

Found 171 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGCCTCCCGGGTTCAAGCAATTCTTGTGCCTCAGCCTTAAGAGCTaGTGGGATGACAGACGTGTACCACCACGCATGGTTAATTTTTGT +
Preference number: 1 (lower is better)
Translates to: LPPGFKQFLCLSLKS*WDDRRVPPRMVNFC
Trigger: ACAAAAATTAACCATGCGTGGTGGTACACGTCTGTCATCCCAGCAGCTCTTAAGGCTGAGGCACAAGAATTGCTTGAACCCGGGAGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000284116.9
3UTR TCA 90 bp GCTTTCCTCATTAGTAAGAGATCAGAAAGCCAGATGAGAAACTTTTaGCTTCTGGACATGGTGTGTGGTTCTTTTAGCTTCAGTATAATA +
Preference number: 1 (lower is better)
Translates to: AFLISKRSESQMRNF*LLDMVCGSFSFSII
Trigger: TATTATACTGAAGCTAAAAGAACCACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATCTCTTACTAATGAGGAAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578026.5
3UTR-3UTR TCA 90 bp GGCAAGAGGCCAGTGAAGAAAAGGCCAAGAATGAGCAGGACACGTTGTAGACTGACCCAAATATACACTTaGATGCCTCGAGCAGTTAGG +
Preference number: 2 (lower is better)
Translates to: GKRPVKKRPRMSRTRCRLTQIYT*MPRAVR
Trigger: CCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGT...CAGTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCTTCACTGGCCTCTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000578026.5
3UTR GCA 72 bp GGGTTCAAGCAATTCTTGTGCCTCAGCCTTAAGAGCTaGTGGGATGACAGACGTGTACCACCACGCATGGTT +
Preference number: 3 (lower is better)
Translates to: GFKQFLCLSLKS*WDDRRVPPRMV
Trigger: AACCATGCGTGGTGGTACACGTCTGTCATCCCAGCAGCTCTTAAGGCTGAGGCACAAGAATTGCTTGAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
3UTR CCA 72 bp TTCAAGCAATTCTTGTGCCTCAGCCTTAAGAGCTGCTaGGATGACAGACGTGTACCACCACGCATGGTTAAT +
Preference number: 3 (lower is better)
Translates to: FKQFLCLSLKSC*DDRRVPPRMVN
Trigger: ATTAACCATGCGTGGTGGTACACGTCTGTCATCCCAGCAGCTCTTAAGGCTGAGGCACAAGAATTGCTTGAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp GGCAAGAGGCCAGTGAAGAAAAGGCCAAGAATGAGCAGGACACGTTGTAGACTGCGCTGCTTCTTTCTCTaGTGCAGCAAGGTCGGGTAT +
Preference number: 4 (lower is better)
Translates to: GKRPVKKRPRMSRTRCRLRCFFL*CSKVGY
Trigger: ATACCCGACCTTGCTGCACCAGAGAAAGAAGCAGCG...CAGTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCTTCACTGGCCTCTTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR GCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTAGCCGGTGCCACTGGTaGAGCGCACTTGTCGGTGCC +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLSRCHW*SALVGA
Trigger: GGCACCGACAAGTGCGCTGCACCAGTGGCACCGGCT...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR GCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTCGCCCCCAGCCGGTaGCACTGGTGCAGCGCACTT +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKLAPSR*HWCSAL
Trigger: AAGTGCGCTGCACCAGTGGCACCGGCTGGGGGCGAG...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR CCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTCCCAGCCGGTGCCACTaGTGCAGCGCACTTGTCGGT +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLPSRCH*CSALVG
Trigger: ACCGACAAGTGCGCTGCACCAGTGGCACCGGCTGGG...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR CCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCATCTCAGTCACCGTGTaGGAAGTCTCCCACCTCCGG +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSISVTV*EVSHLR
Trigger: CCGGAGGTGGGAGACTTCCCACACGGTGACTGAGAT...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp AAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGCATCCAGCACCTCCGCGGTaGGAGATGTGTTTACTGAGG +
Preference number: 4 (lower is better)
Translates to: KCKEELKVLICGSVKQQHPAPPR*EMCLLR
Trigger: CCTCAGTAAACACATCTCTCACCGCGGAGGTGCTGG...ATGCTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTATGGTCTCGATCTCCTaGCCTCGTGATCCGCCCGCC +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVMVSIS*PRDPPA
Trigger: GGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAT...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTCCAGCACCTCCGCGGTaGGAGATGTGTTTACTGAGG +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLPAPPR*EMCLLR
Trigger: CCTCAGTAAACACATCTCTCACCGCGGAGGTGCTGG...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp GGCAAGAGGCCAGTGAAGAAAAGGCCAAGAATGAGCAGGACACGTTGTAGACTGATTTTAACCGCATGCTaGAAGGCTGCCATTGTATTC +
Preference number: 4 (lower is better)
Translates to: GKRPVKKRPRMSRTRCRLILTAC*KAAIVF
Trigger: GAATACAATGGCAGCCTTTCAGCATGCGGTTAAAAT...CAGTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCTTCACTGGCCTCTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR GCA 90 bp GGCAAGAGGCCAGTGAAGAAAAGGCCAAGAATGAGCAGGACACGTTGTAGACTGCGCATGCTGAAAGGCTaGCATTGTATTCTCCAAATT +
Preference number: 4 (lower is better)
Translates to: GKRPVKKRPRMSRTRCRLRMLKG*HCILQI
Trigger: AATTTGGAGAATACAATGGCAGCCTTTCAGCATGCG...CAGTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCTTCACTGGCCTCTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR CCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTATCTCAGTCACCGTGTaGGAAGTCTCCCACCTCCGG +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLISVTV*EVSHLR
Trigger: CCGGAGGTGGGAGACTTCCCACACGGTGACTGAGAT...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CCA 90 bp GCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATATCTCAGTCACCGTGTaGGAAGTCTCCCACCTCCGG +
Preference number: 4 (lower is better)
Translates to: ANALLLSVRKSLRSSFVDISVTV*EVSHLR
Trigger: CCGGAGGTGGGAGACTTCCCACACGGTGACTGAGAT...ATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCGGTAAAAAGCCGCAGTaGACGACATCTCAGTCACCG +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSGKKPQ*TTSQSP
Trigger: CGGTGACTGAGATGTCGTCCACTGCGGCTTTTTACC...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCACCAGCACCTCCGCGGTaGGAGATGTGTTTACTGAGG +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSPAPPR*EMCLLR
Trigger: CCTCAGTAAACACATCTCTCACCGCGGAGGTGCTGG...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATTCACGCCATTCTCCTaGCTCAGCCTCCCGAGTAGC +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSFTPFS*LSLPSS
Trigger: GCTACTCGGGAGGCTGAGTCAGGAGAATGGCGTGAA...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTAGGCAGAGGTTGCAGTaGGCCAAGATCGCACCACTG +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVRQRLQ*AKIAPL
Trigger: CAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCT...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTATCTCAGTCACCGTGTaGGAAGTCTCCCACCTCCGG +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVISVTV*EVSHLR
Trigger: CCGGAGGTGGGAGACTTCCCACACGGTGACTGAGAT...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp AAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGCATCGCTGCTTCTTTCTCTaGTGCAGCAAGGTCGGGTAT +
Preference number: 4 (lower is better)
Translates to: KCKEELKVLICGSVKQQHRCFFL*CSKVGY
Trigger: ATACCCGACCTTGCTGCACCAGAGAAAGAAGCAGCG...ATGCTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp GGCAAGAGGCCAGTGAAGAAAAGGCCAAGAATGAGCAGGACACGTTGTAGACTGTTTGACTTCTGGACATaGTGTGTGGTTCTTTTAGCT +
Preference number: 4 (lower is better)
Translates to: GKRPVKKRPRMSRTRCRLFDFWT*CVVLLA
Trigger: AGCTAAAAGAACCACACACCATGTCCAGAAGTCAAA...CAGTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCTTCACTGGCCTCTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCCAGCACCTCCGCGGTaGGAGATGTGTTTACTGAGG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKPAPPR*EMCLLR
Trigger: CCTCAGTAAACACATCTCTCACCGCGGAGGTGCTGG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp GAGATCAGAAAGCCAGATGAGAAACTTTTGACTTCTGGACATGGTGTGTGGTTCAGAAAAGGCCAAGAATaGGCAGGACACGTTGTAGAC +
Preference number: 4 (lower is better)
Translates to: EIRKPDEKLLTSGHGVWFRKGQE*AGHVVD
Trigger: GTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCT...GAACCACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR TCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAACTCCTGACTTCAGATaGTCCGCCTGTCTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSTPDFR*SACLSL
Trigger: GAGGCTGAGACAGGCGGATCATCTGAAGTCAGGAGT...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR GCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCATGAGACATCCAGTTTaGCAAGGTAAGGTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSMRHPV*QGKVGA
Trigger: AGCTCCCACCTTACCTTGGCAAACTGGATGTCTCAT...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR GCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATCTCCCAGGCTGGAGTaGAGTGGTGCTATCTTGGCT +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSSPRLE*SGAILA
Trigger: AGCCAAGATAGCACCACTGCACTCCAGCCTGGGAGA...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGATCTCAGTCACCGTGTaGGAAGTCTCCCACCTCCGG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKISVTV*EVSHLR
Trigger: CCGGAGGTGGGAGACTTCCCACACGGTGACTGAGAT...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTGGTAAAAAGCCGCAGTaGACGACATCTCAGTCACCG +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLGKKPQ*TTSQSP
Trigger: CGGTGACTGAGATGTCGTCCACTGCGGCTTTTTACC...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CCA 90 bp GCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATGGTAAAAAGCCGCAGTaGACGACATCTCAGTCACCG +
Preference number: 4 (lower is better)
Translates to: ANALLLSVRKSLRSSFVDGKKPQ*TTSQSP
Trigger: CGGTGACTGAGATGTCGTCCACTGCGGCTTTTTACC...ATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTCGCTGCTTCTTTCTCTaGTGCAGCAAGGTCGGGTAT +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLRCFFL*CSKVGY
Trigger: ATACCCGACCTTGCTGCACCAGAGAAAGAAGCAGCG...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAGCAGTGGTGCTATCTTaGCTCACTACAGCCTCTGCC +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSAVVLS*LTTASA
Trigger: GGCAGAGGCTGTAGTGAGCCAAGATAGCACCACTGC...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCACCCAAATATACACTTaGATGCCTCGAGCAGTTAGG +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSTQIYT*MPRAVR
Trigger: CCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGT...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCCCGCTTCACCAACTCTaGAACCTCTTTGAAATGAGA +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSPLHQL*NLFEMR
Trigger: TCTCATTTCAAAGAGGTTTCAGAGTTGGTGAAGCGG...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR GCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCTGCTTCTTTCTCTGGTaGAGCAAGGTCGGGTATTTA +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSCFFLW*SKVGYL
Trigger: TAAATACCCGACCTTGCTGCACCAGAGAAAGAAGCA...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR GCA 90 bp GCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGTGCTTCTTTCTCTGGTaGAGCAAGGTCGGGTATTTA +
Preference number: 4 (lower is better)
Translates to: AKCKEELKVLICGSVKQQCFFLW*SKVGYL
Trigger: TAAATACCCGACCTTGCTGCACCAGAGAAAGAAGCA...CTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAGGTAAAAAGCCGCAGTaGACGACATCTCAGTCACCG +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSGKKPQ*TTSQSP
Trigger: CGGTGACTGAGATGTCGTCCACTGCGGCTTTTTACC...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp GGCAAGAGGCCAGTGAAGAAAAGGCCAAGAATGAGCAGGACACGTTGTAGACTGTCATCTTTTGTGATATaGCAGTCCAATTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: GKRPVKKRPRMSRTRCRLSSFVI*QSNSSI
Trigger: TATGCTAGAATTGGACTGCCATATCACAAAAGATGA...CAGTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCTTCACTGGCCTCTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR CCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCTTTGCCAAGGTAAGGTaGGAGCTCACAGTATTTGAG +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSFAKVR*ELTVFE
Trigger: CTCAAATACTGTGAGCTCCCACCTTACCTTGGCAAA...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCTTTAAGCAACAAGAATaGGGTCACCAAGTATCCTCC +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSFKQQE*GHQVSS
Trigger: GGAGGATACTTGGTGACCTCATTCTTGTTGCTTAAA...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp AAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGCATCAGAGTTTTAAGCAACAAGAATaGGGTCACCAAGTATCCTCC +
Preference number: 4 (lower is better)
Translates to: KEELKVLICGSVKQQHQSFKQQE*GHQVSS
Trigger: GGAGGATACTTGGTGACCTCATTCTTGTTGCTTAAA...ACTCTGATGCTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCATTTTAACCGCATGCTaGAAGGCTGCCATTGTATTC +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSILTAC*KAAIVF
Trigger: GAATACAATGGCAGCCTTTCAGCATGCGGTTAAAAT...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCCAGATGAGAAACTTTTaGCTTCTGGACATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSQMRNF*LLDMVC
Trigger: ACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTG...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCGATCAGAAAGCCAGATaGGAAACTTTTGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSDQKAR*ETFDFW
Trigger: CCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATC...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp GCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGGATCAGAAAGCCAGATaGGAAACTTTTGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: AKCKEELKVLICGSVKQQDQKAR*ETFDFW
Trigger: CCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATC...CTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR GCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTATGAGACATCCAGTTTaGCAAGGTAAGGTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLMRHPV*QGKVGA
Trigger: AGCTCCCACCTTACCTTGGCAAACTGGATGTCTCAT...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR GCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCACTCAGCCTTAAGAGCTaGTGGGATGACAGACGTGTA +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSLSLKS*WDDRRV
Trigger: TACACGTCTGTCATCCCAGCAGCTCTTAAGGCTGAG...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGGGTAAAAAGCCGCAGTaGACGACATCTCAGTCACCG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKGKKPQ*TTSQSP
Trigger: CGGTGACTGAGATGTCGTCCACTGCGGCTTTTTACC...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCGCTGCTTCTTTCTCTaGTGCAGCAAGGTCGGGTAT +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKRCFFL*CSKVGY
Trigger: ATACCCGACCTTGCTGCACCAGAGAAAGAAGCAGCG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CCA 90 bp AAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGCATTTTGCCAAGGTAAGGTaGGAGCTCACAGTATTTGAG +
Preference number: 4 (lower is better)
Translates to: KCKEELKVLICGSVKQQHFAKVR*ELTVFE
Trigger: CTCAAATACTGTGAGCTCCCACCTTACCTTGGCAAA...ATGCTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp AAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGCATATTTTAACCGCATGCTaGAAGGCTGCCATTGTATTC +
Preference number: 4 (lower is better)
Translates to: KCKEELKVLICGSVKQQHILTAC*KAAIVF
Trigger: GAATACAATGGCAGCCTTTCAGCATGCGGTTAAAAT...ATGCTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp TCCAGAAATGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCAGCATGCTCTTTGAAATaGGACATCCAGTTTGCCAAG +
Preference number: 4 (lower is better)
Translates to: SRNANALLLSVRKSLRSSACSLK*DIQFAK
Trigger: CTTGGCAAACTGGATGTCTCATTTCAAAGAGCATGC...TGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCATTTCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTCACTGGCATGCTCTTTaGAATGAGACATCCAGTTTG +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLHWHAL*NETSSL
Trigger: CAAACTGGATGTCTCATTTCAAAGAGCATGCCAGTG...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000579020.5
CDS-3UTR TCA 90 bp TCCAGAAATGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCACACTGGCATGCTCTTTaGAATGAGACATCCAGTTTG +
Preference number: 4 (lower is better)
Translates to: SRNANALLLSVRKSLRSSHWHAL*NETSSL
Trigger: CAAACTGGATGTCTCATTTCAAAGAGCATGCCAGTG...TGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCATTTCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTAGAAAAGGCCAAGAATaGGCAGGACACGTTGTAGAC +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVRKGQE*AGHVVD
Trigger: GTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCT...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAAGAAAAGGCCAAGAATaGGCAGGACACGTTGTAGAC +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSRKGQE*AGHVVD
Trigger: GTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCT...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp AATGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGAGAAAAGGCCAAGAATaGGCAGGACACGTTGTAGAC +
Preference number: 4 (lower is better)
Translates to: NANALLLSVRKSLRSSFVRKGQE*AGHVVD
Trigger: GTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCT...CACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCTGGTCTTTAACTCCTaGCTTCAGATGATCCGCCTG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKLVFNS*LQMIRL
Trigger: CAGGCGGATCATCTGAAGTCAGGAGTTAAAGACCAG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR GCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTGCTTCTTTCTCTGGTaGAGCAAGGTCGGGTATTTA +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLCFFLW*SKVGYL
Trigger: TAAATACCCGACCTTGCTGCACCAGAGAAAGAAGCA...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR GCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTATGAGACATCCAGTTTaGCAAGGTAAGGTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVMRHPV*QGKVGA
Trigger: AGCTCCCACCTTACCTTGGCAAACTGGATGTCTCAT...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR GCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCAAATATACACTTGAATaGCTCGAGCAGTTAGGTGGT +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSKYTLE*LEQLGG
Trigger: ACCACCTAACTGCTCGAGGCATTCAAGTGTATATTT...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTTTGCCAAGGTAAGGTaGGAGCTCACAGTATTTGAG +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLFAKVR*ELTVFE
Trigger: CTCAAATACTGTGAGCTCCCACCTTACCTTGGCAAA...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGACTGGCCGGGTGCAGTaGTTCAAACAAAGCTTTCCT +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKTGRVQ*FKQSFP
Trigger: AGGAAAGCTTTGTTTGAACCACTGCACCCGGCCAGT...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581140.5
CDS-3UTR TCA 90 bp GAGATCAGAAAGCCAGATGAGAAACTTTTGACTTCTGGACATGGTGTGTGGTTCCTTGTTCATCTTTTGTaGTATGGCAGTCCAATTCTA +
Preference number: 4 (lower is better)
Translates to: EIRKPDEKLLTSGHGVWFLVHLL*YGSPIL
Trigger: TAGAATTGGACTGCCATATCACAAAAGATGAACAAG...GAACCACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR TCA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCCTTGTTCATCTTTTGTaGTATGGCAGTCCAATTCTA +
Preference number: 4 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSLVHLL*YGSPIL
Trigger: TAGAATTGGACTGCCATATCACAAAAGATGAACAAG...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAGCATGCTCTTTGAAATaGGACATCCAGTTTGCCAAG +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSACSLK*DIQFAK
Trigger: CTTGGCAAACTGGATGTCTCATTTCAAAGAGCATGC...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGGCATGCTCTTTGAAATaGGACATCCAGTTTGCCAAG +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKACSLK*DIQFAK
Trigger: CTTGGCAAACTGGATGTCTCATTTCAAAGAGCATGC...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000579020.5
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTCACTGGCATGCTCTTTaGAATGAGACATCCAGTTTG +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVHWHAL*NETSSL
Trigger: CAAACTGGATGTCTCATTTCAAAGAGCATGCCAGTG...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGAGAAAAGGCCAAGAATaGGCAGGACACGTTGTAGAC +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKRKGQE*AGHVVD
Trigger: GTCTACAACGTGTCCTGCTCATTCTTGGCCTTTTCT...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp GCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGATGAGAAACTTTTaGCTTCTGGACATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: ANALLLSVRKSLRSSFVDQMRNF*LLDMVC
Trigger: ACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTG...ATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGACCCAAATATACACTTaGATGCCTCGAGCAGTTAGG +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKTQIYT*MPRAVR
Trigger: CCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGT...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTACCCAAATATACACTTaGATGCCTCGAGCAGTTAGG +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVTQIYT*MPRAVR
Trigger: CCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGT...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGGAGCCTGGCTGCTGCTaGTTATGTATAACTTGCCAA +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKEPGCC*LCITCQ
Trigger: TTGGCAAGTTATACATAATCAGCAGCAGCCAGGCTC...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp AATGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGTTCCAGAAACTTACTTaGATGCCTCGAGCAGTTAGG +
Preference number: 4 (lower is better)
Translates to: NANALLLSVRKSLRSSFVFQKLT*MPRAVR
Trigger: CCTAACTGCTCGAGGCATTCAAGTAAGTTTCTGGAA...CACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp AAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGCATTTTGTGTTAAACTGGTaGGCTATGCTGCTTCCAAAA +
Preference number: 4 (lower is better)
Translates to: KCKEELKVLICGSVKQQHFVLNW*AMLLPK
Trigger: TTTTGGAAGCAGCATAGCTCACCAGTTTAACACAAA...ATGCTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR GCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATGCTTCTTTCTCTGGTaGAGCAAGGTCGGGTATTTA +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSCFFLW*SKVGYL
Trigger: TAAATACCCGACCTTGCTGCACCAGAGAAAGAAGCA...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR GCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTCGCATGCTGAAAGGCTaGCATTGTATTCTCCAAATT +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLRMLKG*HCILQI
Trigger: AATTTGGAGAATACAATGGCAGCCTTTCAGCATGCG...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR GCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGATGAGACATCCAGTTTaGCAAGGTAAGGTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKMRHPV*QGKVGA
Trigger: AGCTCCCACCTTACCTTGGCAAACTGGATGTCTCAT...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR GCA 90 bp TTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGATGAGACATCCAGTTTaGCAAGGTAAGGTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: FIAKCKEELKVLICGSVKMRHPV*QGKVGA
Trigger: AGCTCCCACCTTACCTTGGCAAACTGGATGTCTCAT...CTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR GCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTTGTCATCACCCCAGTTaGTCCCAAATCAAAAGCTCT +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVCHHPS*SQIKSS
Trigger: AGAGCTTTTGATTTGGGAGCAACTGGGGTGATGACA...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR GCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGTGTCATCACCCCAGTTaGTCCCAAATCAAAAGCTCT +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKCHHPS*SQIKSS
Trigger: AGAGCTTTTGATTTGGGAGCAACTGGGGTGATGACA...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR GCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATGTCATCACCCCAGTTaGTCCCAAATCAAAAGCTCT +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSCHHPS*SQIKSS
Trigger: AGAGCTTTTGATTTGGGAGCAACTGGGGTGATGACA...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR GCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTTTCAAGCAATTCTTGTaGCTCAGCCTTAAGAGCTGC +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVFKQFL*LSLKSC
Trigger: GCAGCTCTTAAGGCTGAGGCACAAGAATTGCTTGAA...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR GCA 90 bp GCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGATGCTGCTTCCAAAATaGATCATTCCAGAAACTTAC +
Preference number: 4 (lower is better)
Translates to: AKCKEELKVLICGSVKQQMLLPK*IIPETY
Trigger: GTAAGTTTCTGGAATGATGCATTTTGGAAGCAGCAT...CTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATTTGCCAAGGTAAGGTaGGAGCTCACAGTATTTGAG +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSFAKVR*ELTVFE
Trigger: CTCAAATACTGTGAGCTCCCACCTTACCTTGGCAAA...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAATCCCTAAGCTTTGTTaGATAGTCTGTCATCACCCC +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSIPKLC*IVCHHP
Trigger: GGGGTGATGACAGACTATCCAACAAAGCTTAGGGAT...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGTTTAAGCAACAAGAATaGGGTCACCAAGTATCCTCC +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKFKQQE*GHQVSS
Trigger: GGAGGATACTTGGTGACCTCATTCTTGTTGCTTAAA...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGGAGAGATGTGTTTACTaGGGAATCGCTGCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKERCVY*GIAASF
Trigger: GAAAGAAGCAGCGATTCCTCAGTAAACACATCTCTC...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTATTTTAACCGCATGCTaGAAGGCTGCCATTGTATTC +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVILTAC*KAAIVF
Trigger: GAATACAATGGCAGCCTTTCAGCATGCGGTTAAAAT...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp TCCAGAAATGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCAGGAGCTCACAGTATTTaGGATCAGAGATGTTTACAT +
Preference number: 4 (lower is better)
Translates to: SRNANALLLSVRKSLRSSGAHSI*DQRCLH
Trigger: ATGTAAACATCTCTGATCTCAAATACTGTGAGCTCC...TGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCATTTCTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGGCATGCTCTTTGAAATaGGACATCCAGTTTGCCAAG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKACSLK*DIQFAK
Trigger: CTTGGCAAACTGGATGTCTCATTTCAAAGAGCATGC...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCACTGGCATGCTCTTTaGAATGAGACATCCAGTTTG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKHWHAL*NETSSL
Trigger: CAAACTGGATGTCTCATTTCAAAGAGCATGCCAGTG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCACAGATGAGAAACTTTTaGCTTCTGGACATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSQMRNF*LLDMVC
Trigger: ACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTG...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTCAGATGAGAAACTTTTaGCTTCTGGACATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVQMRNF*LLDMVC
Trigger: ACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTG...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTGATCAGAAAGCCAGATaGGAAACTTTTGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVDQKAR*ETFDFW
Trigger: CCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATC...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGGATCAGAAAGCCAGATaGGAAACTTTTGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKDQKAR*ETFDFW
Trigger: CCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATC...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAGATCAGAAAGCCAGATaGGAAACTTTTGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSDQKAR*ETFDFW
Trigger: CCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATC...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGACCCAAATATACACTTaGATGCCTCGAGCAGTTAGG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKTQIYT*MPRAVR
Trigger: CCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGT...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTCAACTTTTATTTTCTTaGGCCTGGCTGCTGCTGATT +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVQLLFS*AWLLLI
Trigger: AATCAGCAGCAGCCAGGCTCAAGAAAATAAAAGTTG...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR TCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTACTCTGAAACCTCTTTaGAATGAGACATCCAGTTTG +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLTLKPL*NETSSL
Trigger: CAAACTGGATGTCTCATTTCAAAGAGGTTTCAGAGT...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR GCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTGCTTCTTTCTCTGGTaGAGCAAGGTCGGGTATTTA +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKCFFLW*SKVGYL
Trigger: TAAATACCCGACCTTGCTGCACCAGAGAAAGAAGCA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR GCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCCACACTCAGCCCAATaGCAAATGTATCCAATAGTC +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKPHSAQ*QMYPIV
Trigger: GACTATTGGATACATTTGGCATTGGGCTGAGTGTGG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR GCA 90 bp AATGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGAGAAACTTACTTGAATaGCTCGAGCAGTTAGGTGGT +
Preference number: 4 (lower is better)
Translates to: NANALLLSVRKSLRSSFVRNLLE*LEQLGG
Trigger: ACCACCTAACTGCTCGAGGCATTCAAGTAAGTTTCT...CACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTTTGCCAAGGTAAGGTaGGAGCTCACAGTATTTGAG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKFAKVR*ELTVFE
Trigger: CTCAAATACTGTGAGCTCCCACCTTACCTTGGCAAA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CCA 90 bp GCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATTTTGACTTCTGGACATaGTGTGTGGTTCTTTTAGCT +
Preference number: 4 (lower is better)
Translates to: ANALLLSVRKSLRSSFVDFDFWT*CVVLLA
Trigger: AGCTAAAAGAACCACACACCATGTCCAGAAGTCAAA...ATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGTTTGACTTCTGGACATaGTGTGTGGTTCTTTTAGCC +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKFDFWT*CVVLLA
Trigger: GGCTAAAAGAACCACACACCATGTCCAGAAGTCAAA...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579020.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTTTAAGCAACAAGAATaGGGTCACCAAGTATCCTCC +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKFKQQE*GHQVSS
Trigger: GGAGGATACTTGGTGACCTCATTCTTGTTGCTTAAA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGATTTTAACCGCATGCTaGAAGGCTGCCATTGTATTC +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKILTAC*KAAIVF
Trigger: GAATACAATGGCAGCCTTTCAGCATGCGGTTAAAAT...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp GCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCTTGTTCATCTTTTGTaGTATGGCAGTCCAATTCTA +
Preference number: 4 (lower is better)
Translates to: ANALLLSVRKSLRSSFVDLVHLL*YGSPIL
Trigger: TAGAATTGGACTGCCATATCACAAAAGATGAACAAG...ATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR TCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGGGAGCTCACAGTATTTaGGATCAGAGATGTTTACAT +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKGAHSI*DQRCLH
Trigger: ATGTAAACATCTCTGATCTCAAATACTGTGAGCTCC...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCAGATGAGAAACTTTTaGCTTCTGGACATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKQMRNF*LLDMVC
Trigger: ACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGGATCAGAAAGCCAGATaGGAAACTTTTGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKDQKAR*ETFDFW
Trigger: CCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATC...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCAACTTTTATTTTCTTaGGCCTGGCTGCTGCTGATT +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKQLLFS*AWLLLI
Trigger: AATCAGCAGCAGCCAGGCTCAAGAAAATAAAAGTTG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR GCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCGCATGCTGAAAGGCTaGCATTGTATTCTCCAAATT +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKRMLKG*HCILQI
Trigger: AATTTGGAGAATACAATGGCAGCCTTTCAGCATGCG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR GCA 90 bp TTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCGCATGCTGAAAGGCTaGCATTGTATTCTCCAAATT +
Preference number: 4 (lower is better)
Translates to: FIAKCKEELKVLICGSVKRMLKG*HCILQI
Trigger: AATTTGGAGAATACAATGGCAGCCTTTCAGCATGCG...CTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR GCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAAAATATACACTTGAATaGCTCGAGCAGTTAGGTGGT +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSKYTLE*LEQLGG
Trigger: ACCACCTAACTGCTCGAGGCATTCAAGTGTATATTT...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR GCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTAAATATACACTTGAATaGCTCGAGCAGTTAGGTGGT +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVKYTLE*LEQLGG
Trigger: ACCACCTAACTGCTCGAGGCATTCAAGTGTATATTT...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR GCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAGGCTCAGTTAGTCAGTaGCAAAAATGGAAATCTTAC +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSGSVSQ*QKWKSY
Trigger: GTAAGATTTCCATTTTTGGCACTGACTAACTGAGCC...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR GCA 90 bp TTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGACTGGTGAGCTATGCTaGTTCCAAAATGCATCATTC +
Preference number: 4 (lower is better)
Translates to: FIAKCKEELKVLICGSVKTGELC*FQNASF
Trigger: GAATGATGCATTTTGGAAGCAGCATAGCTCACCAGT...CTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATTTGACTTCTGGACATaGTGTGTGGTTCTTTTAGCT +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSFDFWT*CVVLLA
Trigger: AGCTAAAAGAACCACACACCATGTCCAGAAGTCAAA...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGGGAGCTCACAGTATTTaGGATCAGAGATGTTTACAT +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKGAHSI*DQRCLH
Trigger: ATGTAAACATCTCTGATCTCAAATACTGTGAGCTCC...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CCA 90 bp TGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCATCTTTTGTGATATaGCAGTCCAATTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: CQCFIAKCKEELKVLICGSSFVI*QSNSSI
Trigger: TATGCTAGAATTGGACTGCCATATCACAAAAGATGA...TCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTCTACAATTTCATAATTaGCATTACCCCACACTGTTA +
Preference number: 4 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLLQFHN*HYPTLL
Trigger: TAACAGTGTGGGGTAATGCCAATTATGAAATTGTAG...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTTTGACTTCTGGACATaGTGTGTGGTTCTTTTAGCT +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKFDFWT*CVVLLA
Trigger: AGCTAAAAGAACCACACACCATGTCCAGAAGTCAAA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR TCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCTTGTTCATCTTTTGTaGTATGGCAGTCCAATTCTA +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKLVHLL*YGSPIL
Trigger: TAGAATTGGACTGCCATATCACAAAAGATGAACAAG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR GCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGACACTACCAAATAGCTaGAATGGCCTTCAAAATTTC +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKTLPNS*NGLQNF
Trigger: GAAATTTTGAAGGCCATTGCAGCTATTTGGTAGTGT...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CCA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTTCATCTTTTGTGATATaGCAGTCCAATTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVSSFVI*QSNSSI
Trigger: TATGCTAGAATTGGACTGCCATATCACAAAAGATGA...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGTCATCTTTTGTGATATaGCAGTCCAATTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKSSFVI*QSNSSI
Trigger: TATGCTAGAATTGGACTGCCATATCACAAAAGATGA...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CCA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTACAATTTCATAATTaGCATTACCCCACACTGTTA +
Preference number: 4 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKLQFHN*HYPTLL
Trigger: TAACAGTGTGGGGTAATGCCAATTATGAAATTGTAG...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CCA 90 bp AATGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGCTACAATTTCATAATTaGCATTACCCCACACTGTTA +
Preference number: 4 (lower is better)
Translates to: NANALLLSVRKSLRSSFVLQFHN*HYPTLL
Trigger: TAACAGTGTGGGGTAATGCCAATTATGAAATTGTAG...CACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGAACCTTTTACCATTCTaGAAATGGCTTAGGGAAATG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKNLLPF*KWLREM
Trigger: CATTTCCCTAAGCCATTTCCAGAATGGTAAAAGGTT...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAGTGTACCACCACGCATaGTTAATTTTTGTATTTTTG +
Preference number: 4 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSVYHHA*LIFVFL
Trigger: CAAAAATACAAAAATTAACCATGCGTGGTGGTACAC...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTCAGGAACATCTTTATaGGGGTTCATAAATGTTAGG +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKSGTSL*GFINVR
Trigger: CCTAACATTTATGAACCCCCATAAAGATGTTCCTGA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTCATCTTTTGTGATATaGCAGTCCAATTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKSSFVI*QSNSSI
Trigger: TATGCTAGAATTGGACTGCCATATCACAAAAGATGA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CCA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCTACAATTTCATAATTaGCATTACCCCACACTGTTA +
Preference number: 4 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKLQFHN*HYPTLL
Trigger: TAACAGTGTGGGGTAATGCCAATTATGAAATTGTAG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
3UTR CAA 72 bp GTCATCACCCCAGTTGCTCCCAAATCAAAAGCTCTTTaGTATTCTTGTTCTTCATTTAATACCCAAATATAC +
Preference number: 4 (lower is better)
Translates to: VITPVAPKSKAL*YSCSSFNTQIY
Trigger: GTATATTTGGGTATTAAATGAAGAACAAGAATACAAAAGAGCTTTTGATTTGGGAGCAACTGGGGTGATGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS TCA 90 bp TCTCCAAATTTTCTCCAGCACCTCCGCGGTGAGAGATGTGTTTACTaGGGAATCGCTGCTTCTTTCTCTGGTGCAGCAAGGTCGGGTATT +
Preference number: 5 (lower is better)
Translates to: SPNFLQHLRGERCVY*GIAASFSGAARSGI
Trigger: AATACCCGACCTTGCTGCACCAGAGAAAGAAGCAGCGATTCCTCAGTAAACACATCTCTCACCGCGGAGGTGCTGGAGAAAATTTGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000284116.9
ENST00000578026.5
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5
ENST00000583543.1
CDS-3UTR CAA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTGCAGAGGCAGGAGAATaGCTGGAACCTGGGAGGCAG +
Preference number: 5 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVAEAGE*LEPGRQ
Trigger: CTGCCTCCCAGGTTCCAGCAATTCTCCTGCCTCTGC...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CAA 90 bp GAGATCAGAAAGCCAGATGAGAAACTTTTGACTTCTGGACATGGTGTGTGGTTCCTGTCATCACCCCAGTaGCTCCCAAATCAAAAGCTC +
Preference number: 5 (lower is better)
Translates to: EIRKPDEKLLTSGHGVWFLSSPQ*LPNQKL
Trigger: GAGCTTTTGATTTGGGAGCAACTGGGGTGATGACAG...GAACCACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000578026.5
CDS-3UTR CAA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTGCAGTGGTGCTATCTaGGCTCACTACAGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKCSGAI*AHYSLC
Trigger: GCAGAGGCTGTAGTGAGCCAAGATAGCACCACTGCA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CAA 90 bp AAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGCAGCAGCATCAGAGTGCTGAAAGGCTGCCATaGTATTCTCCAAATTTTCTC +
Preference number: 5 (lower is better)
Translates to: KEELKVLICGSVKQQHQSAERLP*YSPNFL
Trigger: GAGAAAATTTGGAGAATACAATGGCAGCCTTTCAGC...ACTCTGATGCTGCTGCTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CAA 90 bp CCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCCTCAGAGATGTTTACATaGACCCCAGTTGCTCTCTTT +
Preference number: 5 (lower is better)
Translates to: PKYTLECLEQLGGQTKLSSEMFT*TPVALF
Trigger: AAAGAGAGCAACTGGGGTCAATGTAAACATCTCTGA...GGAAAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CAA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTCTGTCATCACCCCAGTaGCTCCCAAATCAAAAGCTC +
Preference number: 5 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVLSSPQ*LPNQKL
Trigger: GAGCTTTTGATTTGGGAGCAACTGGGGTGATGACAG...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR CAA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTGGGTTCAAGCAATTCTaGTGCCTCAGCCTTAAGAGC +
Preference number: 5 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVGFKQF*CLSLKS
Trigger: GCTCTTAAGGCTGAGGCACAAGAATTGCTTGAACCC...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CAA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTCCAGATGAGAAACTTTaGACTTCTGGACATGGTGTG +
Preference number: 5 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLPDEKL*TSGHGV
Trigger: CACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGG...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CAA 90 bp TCCAGAAATGCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCACCAGATGAGAAACTTTaGACTTCTGGACATGGTGTG +
Preference number: 5 (lower is better)
Translates to: SRNANALLLSVRKSLRSSPDEKL*TSGHGV
Trigger: CACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGG...TGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGCATTTCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS TCA 90 bp GCTTTCCTCATTAGTAAGAGATCAGAAAGCCAGATGAGAAACTTTTaGCTTCTGGACATGGTGTGTGGTTCTTTTAGCCTCTTTGTAGCA +
Preference number: 5 (lower is better)
Translates to: AFLISKRSESQMRNF*LLDMVCGSFSLFVA
Trigger: TGCTACAAAGAGGCTAAAAGAACCACACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGGCTTTCTGATCTCTTACTAATGAGGAAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579020.5
CDS-3UTR CAA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTGCTGAAAGGCTGCCATaGTATTCTCCAAATTTTCTC +
Preference number: 5 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLAERLP*YSPNFL
Trigger: GAGAAAATTTGGAGAATACAATGGCAGCCTTTCAGC...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CAA 90 bp ATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCTTTCAGAGATGTTTACATaGACCCCAGTTGCTCTCTTT +
Preference number: 5 (lower is better)
Translates to: IPKYTLECLEQLGGQTKLSEMFT*TPVALF
Trigger: AAAGAGAGCAACTGGGGTCAATGTAAACATCTCTGA...AAGCTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CAA 90 bp GCCAATGCTTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATTCAGAGATGTTTACATaGACCCCAGTTGCTCTCTTT +
Preference number: 5 (lower is better)
Translates to: ANALLLSVRKSLRSSFVDSEMFT*TPVALF
Trigger: AAAGAGAGCAACTGGGGTCAATGTAAACATCTCTGA...ATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAAGCATTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS-3UTR CAA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGCCAGATGAGAAACTTTaGACTTCTGGACATGGTGTG +
Preference number: 5 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKPDEKL*TSGHGV
Trigger: CACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGG...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CAA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCACCAGATGAGAAACTTTaGACTTCTGGACATGGTGTG +
Preference number: 5 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSPDEKL*TSGHGV
Trigger: CACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGG...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000579076.1
CDS-3UTR CAA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCAGCTGAAAGGCTGCCATaGTATTCTCCAAATTTTCTC +
Preference number: 5 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSAERLP*YSPNFL
Trigger: GAGAAAATTTGGAGAATACAATGGCAGCCTTTCAGC...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CAA 90 bp TTAATACCCAAATATACACTTGAATGCCTCGAGCAGTTAGGTGGTCAAACAAAGGCTGAAAGGCTGCCATaGTATTCTCCAAATTTTCTC +
Preference number: 5 (lower is better)
Translates to: LIPKYTLECLEQLGGQTKAERLP*YSPNFL
Trigger: GAGAAAATTTGGAGAATACAATGGCAGCCTTTCAGC...CTTTGTTTGACCACCTAACTGCTCGAGGCATTCAAGTGTATATTTGGGTATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000578026.5
ENST00000579020.5
CDS-3UTR CAA 90 bp GCAAATGATATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATCAGAGATGTTTACATaGACCCCAGTTGCTCTCTTT +
Preference number: 5 (lower is better)
Translates to: ANDIYVIQGQIGEYSHSSSEMFT*TPVALF
Trigger: AAAGAGAGCAACTGGGGTCAATGTAAACATCTCTGA...TGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS-3UTR CAA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGCCAGATGAGAAACTTTaGACTTCTGGACATGGTGTG +
Preference number: 5 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKPDEKL*TSGHGV
Trigger: CACACCATGTCCAGAAGTCAAAAGTTTCTCATCTGG...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CAA 90 bp TATTTATGTCATCCAGGGACAGATAGGAGAGTACAGTCATTCTTCATAGCAGTTTCAACTTTTATTTTCTaGAGCCTGGCTGCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: YLCHPGTDRRVQSFFIAVSTFIF*SLAAAD
Trigger: ATCAGCAGCAGCCAGGCTCAAGAAAATAAAAGTTGA...AACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000284116.9
CDS CCA 90 bp AGATTCTCATCATGTGACACTACAACTTGTTCATCTTTTGTGATATaGCAGTCCAATTCTAGCATATCAGTTCCGATTTTAACCGCATGC +
Preference number: 5 (lower is better)
Translates to: RFSSCDTTTCSSFVI*QSNSSISVPILTAC
Trigger: GCATGCGGTTAAAATCGGAACTGATATGCTAGAATTGGACTGCCATATCACAAAAGATGAACAAGTTGTAGTGTCACATGATGAGAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000284116.9
ENST00000578026.5
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5
ENST00000583543.1
CDS-3UTR CAA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGGCTGAAAGGCTGCCATaGTATTCTCCAAATTTTCTC +
Preference number: 5 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKAERLP*YSPNFL
Trigger: GAGAAAATTTGGAGAATACAATGGCAGCCTTTCAGC...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CAA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTCAGAGATGTTTACATaGACCCCAGTTGCTCTCTTT +
Preference number: 5 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKSEMFT*TPVALF
Trigger: AAAGAGAGCAACTGGGGTCAATGTAAACATCTCTGA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CAA 90 bp CTGCTGCTGATTATGTATAACTTGCCAAATAACTACACATCACTGATTTCCAAGTCAACTTTTATTTTCTaGAGCCTGGCTGCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: LLLIMYNLPNNYTSLISKSTFIF*SLAAAD
Trigger: ATCAGCAGCAGCCAGGCTCAAGAAAATAAAAGTTGA...CTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000284116.9
ENST00000581140.5
CDS-3UTR CAA 90 bp TTTATTGCTAAGTGTAAGGAAGAGCTTAAGGTCCTCATTTGTGGATCAGTAAAGAATGCCAATGCTTTATaGCTAAGTGTAAGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: FIAKCKEELKVLICGSVKNANAL*LSVRKS
Trigger: GCTCTTCCTTACACTTAGCAATAAAGCATTGGCATT...CTTTACTGATCCACAAATGAGGACCTTAAGCTCTTCCTTACACTTAGCAATAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581276.5
CDS TCA 72 bp TTTCTCCAGCACCTCCGCGGTGAGAGATGTGTTTACTaGGGAATCGCTGCTTCTTTCTCTGGTGCAGCAAGG +
Preference number: 6 (lower is better)
Translates to: FLQHLRGERCVY*GIAASFSGAAR
Trigger: CCTTGCTGCACCAGAGAAAGAAGCAGCGATTCCTCAGTAAACACATCTCTCACCGCGGAGGTGCTGGAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000284116.9
ENST00000578026.5
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5
ENST00000583543.1
CDS CAA 72 bp CGCTTCACCAACTCTGAAACCTTCTTAATCAGCACATaGTTGTTGACTTTGATATCGATGTTAATGGGAGTG +
Preference number: 6 (lower is better)
Translates to: RFTNSETFLIST*LLTLISMLMGV
Trigger: CACTCCCATTAACATCGATATCAAAGTCAACAACAATGTGCTGATTAAGAAGGTTTCAGAGTTGGTGAAGCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284116.9
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5
CDS CAA 72 bp TCTGAAACCTTCTTAATCAGCACATTGTTGTTGACTTaGATATCGATGTTAATGGGAGTGTTAGGAAAGGCC +
Preference number: 6 (lower is better)
Translates to: SETFLISTLLLT*ISMLMGVLGKA
Trigger: GGCCTTTCCTAACACTCCCATTAACATCGATATCAAAGTCAACAACAATGTGCTGATTAAGAAGGTTTCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284116.9
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5
CDS CAA 90 bp TTCACCAACTCTGAAACCTTCTTAATCAGCACATTGTTGTTGACTTaGATATCGATGTTAATGGGAGTGTTAGGAAAGGCCTCAAAAACT +
Preference number: 6 (lower is better)
Translates to: FTNSETFLISTLLLT*ISMLMGVLGKASKT
Trigger: AGTTTTTGAGGCCTTTCCTAACACTCCCATTAACATCGATATCAAAGTCAACAACAATGTGCTGATTAAGAAGGTTTCAGAGTTGGTGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000284116.9
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5
CDS CAA 72 bp ACCAACTCTGAAACCTTCTTAATCAGCACATTGTTGTaGACTTTGATATCGATGTTAATGGGAGTGTTAGGA +
Preference number: 6 (lower is better)
Translates to: TNSETFLISTLL*TLISMLMGVLG
Trigger: TCCTAACACTCCCATTAACATCGATATCAAAGTCAACAACAATGTGCTGATTAAGAAGGTTTCAGAGTTGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284116.9
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5
CDS CCA 72 bp TCATGTGACACTACAACTTGTTCATCTTTTGTGATATaGCAGTCCAATTCTAGCATATCAGTTCCGATTTTA +
Preference number: 6 (lower is better)
Translates to: SCDTTTCSSFVI*QSNSSISVPIL
Trigger: TAAAATCGGAACTGATATGCTAGAATTGGACTGCCATATCACAAAAGATGAACAAGTTGTAGTGTCACATGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000284116.9
ENST00000578026.5
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5
ENST00000583543.1
CDS CAA 72 bp TTCACCAACTCTGAAACCTTCTTAATCAGCACATTGTaGTTGACTTTGATATCGATGTTAATGGGAGTGTTA +
Preference number: 6 (lower is better)
Translates to: FTNSETFLISTL*LTLISMLMGVL
Trigger: TAACACTCCCATTAACATCGATATCAAAGTCAACAACAATGTGCTGATTAAGAAGGTTTCAGAGTTGGTGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000284116.9
ENST00000579020.5
ENST00000581140.5
ENST00000581276.5