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Pregenerated sensors for GBP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000117228

Ensembl transcript IDs: ENST00000459831.2, ENST00000495131.2, ENST00000681280.1

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CTACTCTATTGCATAGTGCAGGTCCAGTTCACTAGGGCAATTTCAAGCAATAGAGTGGAAGTTATTCTATaGTCCTCTAGTCTTAAACAA +
Preference number: 2 (lower is better)
Translates to: LLYCIVQVQFTRAISSNRVEVIL*SSSLKQ
Trigger: TTGTTTAAGACTAGAGGAGCATAGAATAACTTCCAC...TCTATTGCTTGAAATTGCCCTAGTGAACTGGACCTGCACTATGCAATAGAGTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000681280.1
CDS-3UTR TCA 90 bp CTACTCTATTGCATAGTGCAGGTCCAGTTCACTAGGGCAATTTCAAGCAATAGATCTAGTCTTAAACAATaGGCAGAAGTACTAGGAAGG +
Preference number: 4 (lower is better)
Translates to: LLYCIVQVQFTRAISSNRSSLKQ*AEVLGR
Trigger: CCTTCCTAGTACTTCTGCTCATTGTTTAAGACTAGA...TCTATTGCTTGAAATTGCCCTAGTGAACTGGACCTGCACTATGCAATAGAGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000681280.1
CDS TCA 90 bp AGGGCTCTAAGTTTGGAACTGTTAATGCTGTGGTCCCATATGGGCTaGGCCTGCTGGGGAATGAAGCCATCATTGAGAAAGCAAATATCA +
Preference number: 5 (lower is better)
Translates to: RALSLELLMLWSHMG*ACWGMKPSLRKQIS
Trigger: TGATATTTGCTTTCTCAATGATGGCTTCATTCCCCAGCAGGCTCAGCCCATATGGGACCACAGCATTAACAGTTCCAAACTTAGAGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000495131.2
CDS-3UTR CAA 90 bp CTACTCTATTGCATAGTGCAGGTCCAGTTCACTAGGGCAATTTCAAGCAATAGACTAGGGGCTACTCTATaGCATAGTGCAGGTCCAGTT +
Preference number: 5 (lower is better)
Translates to: LLYCIVQVQFTRAISSNRLGATL*HSAGPV
Trigger: AACTGGACCTGCACTATGCAATAGAGTAGCCCCTAG...TCTATTGCTTGAAATTGCCCTAGTGAACTGGACCTGCACTATGCAATAGAGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000681280.1
CDS-3UTR CAA 90 bp CTACTCTATTGCATAGTGCAGGTCCAGTTCACTAGGGCAATTTCAAGCAATAGACAGGAGTCATTCTGGTaGTCACCCTTCTCTACATCT +
Preference number: 5 (lower is better)
Translates to: LLYCIVQVQFTRAISSNRQESFW*SPFSTS
Trigger: AGATGTAGAGAAGGGTGACAACCAGAATGACTCCTG...TCTATTGCTTGAAATTGCCCTAGTGAACTGGACCTGCACTATGCAATAGAGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000681280.1
CDS GCA 90 bp GCACTACATGCAGAGCTGAGTAATTCAGACAGAGACTGTATGACCTaGAAAGCCATAAATCGTTACTATCTGGTATTTTACAGAAAAGAT +
Preference number: 5 (lower is better)
Translates to: ALHAELSNSDRDCMT*KAINRYYLVFYRKD
Trigger: ATCTTTTCTGTAAAATACCAGATAGTAACGATTTATGGCTTTGCAGGTCATACAGTCTCTGTCTGAATTACTCAGCTCTGCATGTAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000459831.2
CDS CCA 90 bp CTATGGCTTATGGGTGCCATCCTGTTATTGAAAGTAAAAATTGATTaGAACATAGCCACACCTATTGGTTTATGTATTTTCTATGGCTGT +
Preference number: 5 (lower is better)
Translates to: LWLMGAILLLKVKID*NIATPIGLCIFYGC
Trigger: ACAGCCATAGAAAATACATAAACCAATAGGTGTGGCTATGTTCCAATCAATTTTTACTTTCAATAACAGGATGGCACCCATAAGCCATAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000459831.2
CDS TCA 72 bp AGTTTGGAACTGTTAATGCTGTGGTCCCATATGGGCTaGGCCTGCTGGGGAATGAAGCCATCATTGAGAAAG +
Preference number: 6 (lower is better)
Translates to: SLELLMLWSHMG*ACWGMKPSLRK
Trigger: CTTTCTCAATGATGGCTTCATTCCCCAGCAGGCTCAGCCCATATGGGACCACAGCATTAACAGTTCCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000495131.2
CDS TCA 72 bp TTATTTACAAAGACAGCTGGCAGGCAGGATTTGCCATaGTTTGTCTTGGGCTGTAGTTTGCCAATGCTTGGA +
Preference number: 6 (lower is better)
Translates to: LFTKTAGRQDLP*FVLGCSLPMLG
Trigger: TCCAAGCATTGGCAAACTACAGCCCAAGACAAATCATGGCAAATCCTGCCTGCCAGCTGTCTTTGTAAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000459831.2
CDS GCA 72 bp AAACCTTATTTACAAAGACAGCTGGCAGGCAGGATTTaGCATGATTTGTCTTGGGCTGTAGTTTGCCAATGC +
Preference number: 6 (lower is better)
Translates to: KPYLQRQLAGRI*HDLSWAVVCQC
Trigger: GCATTGGCAAACTACAGCCCAAGACAAATCATGGCAAATCCTGCCTGCCAGCTGTCTTTGTAAATAAGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000459831.2
CDS GCA 72 bp GCAGAGCTGAGTAATTCAGACAGAGACTGTATGACCTaGAAAGCCATAAATCGTTACTATCTGGTATTTTAC +
Preference number: 6 (lower is better)
Translates to: AELSNSDRDCMT*KAINRYYLVFY
Trigger: GTAAAATACCAGATAGTAACGATTTATGGCTTTGCAGGTCATACAGTCTCTGTCTGAATTACTCAGCTCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000459831.2
CDS CAA 90 bp CTCTTCAGGCTGGATGGTCTCTTTTCCAAGTATTCAACTCTGTTATaGAAGCATGACAACAGCTTTAGACAATATGTAAATGAATGGGCA +
Preference number: 6 (lower is better)
Translates to: LFRLDGLFSKYSTLL*KHDNSFRQYVNEWA
Trigger: TGCCCATTCATTTACATATTGTCTAAAGCTGTTGTCATGCTTCAATAACAGAGTTGAATACTTGGAAAAGAGACCATCCAGCCTGAAGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000459831.2
CDS CAA 72 bp TTCTGCAAACTATGGCTTATGGGTGCCATCCTGTTATaGAAAGTAAAAATTGATTGGAACATAGCCACACCT +
Preference number: 6 (lower is better)
Translates to: FCKLWLMGAILL*KVKIDWNIATP
Trigger: AGGTGTGGCTATGTTCCAATCAATTTTTACTTTCAATAACAGGATGGCACCCATAAGCCATAGTTTGCAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000459831.2
CDS CAA 90 bp AAAACAGAGTTCTGCAAACTATGGCTTATGGGTGCCATCCTGTTATaGAAAGTAAAAATTGATTGGAACATAGCCACACCTATTGGTTTA +
Preference number: 6 (lower is better)
Translates to: KTEFCKLWLMGAILL*KVKIDWNIATPIGL
Trigger: TAAACCAATAGGTGTGGCTATGTTCCAATCAATTTTTACTTTCAATAACAGGATGGCACCCATAAGCCATAGTTTGCAGAACTCTGTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000459831.2
CDS CAA 72 bp CTGGATGGTCTCTTTTCCAAGTATTCAACTCTGTTATaGAAGCATGACAACAGCTTTAGACAATATGTAAAT +
Preference number: 6 (lower is better)
Translates to: LDGLFSKYSTLL*KHDNSFRQYVN
Trigger: ATTTACATATTGTCTAAAGCTGTTGTCATGCTTCAATAACAGAGTTGAATACTTGGAAAAGAGACCATCCAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000459831.2