RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GABRA5 (Homo sapiens)

Ensembl gene IDs: ENSG00000186297

Ensembl transcript IDs: ENST00000335625.10, ENST00000355395.9, ENST00000400081.7, ENST00000554038.5, ENST00000554083.1, ENST00000554596.5, ENST00000554599.5, ENST00000555182.5, ENST00000557449.5, ENST00000557484.5

Found 278 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTaGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGT +
Preference number: 1 (lower is better)
Translates to: DSAHIWRVPVSKTSP*YHFAGSMAVLEFGS
Trigger: ACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR TCA 90 bp GAGGTGGTCAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTaGGAATGTCATCAAAACACTGTTTGTTTTAACATCTCCTTTCCT +
Preference number: 1 (lower is better)
Translates to: EVVSVSETAITWAKC*ECHQNTVCFNISFP
Trigger: AGGAAAGGAGATGTTAAAACAAACAGTGTTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTGACCACCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
3UTR TCA 90 bp ATACGTATCTTGTTTGTAAACTATCAACGTATGATACTGGGCATCTaGGTGTCAGTCATCGTATCCTGTTTTTCCAGAAAGTTGTTTGCT +
Preference number: 1 (lower is better)
Translates to: IRILFVNYQRMILGI*VSVIVSCFSRKLFA
Trigger: AGCAAACAACTTTCTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGATAGTTTACAAACAAGATACGTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR CCA 90 bp CATCGTATCCTGTTTTTCCAGAAAGTTGTTTGCTCGAATTATCAATaGGACATCTTGGAAACATCTGAAGTTACATATAGAAACATCAAG +
Preference number: 1 (lower is better)
Translates to: HRILFFQKVVCSNYQ*DILETSEVTYRNIK
Trigger: CTTGATGTTTCTATATGTAACTTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAAAAACAGGATACGATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGAAGTATGGCTGTCTTaGAGTTTGGGAGTGTGGCCG +
Preference number: 2 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYEVWLS*SLGVWP
Trigger: CGGCCACACTCCCAAACTCCAAGACAGCCATACTTC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGAGCAAGACCTCTCCTTaGTACCATTTCGCTGGAAGT +
Preference number: 2 (lower is better)
Translates to: TQLQFLTTEALHAGCRERSKTSP*YHFAGS
Trigger: ACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
3UTR-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACATTTCGCTGGAAGTATaGCTGTCTTGGAGTTTGGGA +
Preference number: 2 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYISLEV*LSWSLG
Trigger: TCCCAAACTCCAAGACAGCCATACTTCCAGCGAAAT...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGATTTCGCTGGAAGTATaGCTGTCTTGGAGTTTGGGA +
Preference number: 2 (lower is better)
Translates to: TQLQFLTTEALHAGCRERISLEV*LSWSLG
Trigger: TCCCAAACTCCAAGACAGCCATACTTCCAGCGAAAT...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
3UTR-3UTR TCA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTATGGAGAGTCCCTGTaGGCAAGACCTCTCCTTGGT +
Preference number: 2 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWYGESL*ARPLLG
Trigger: ACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATA...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR TCA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTTATGGAGAGTCCCTGTaGGCAAGACCTCTCCTTGGT +
Preference number: 2 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPYGESL*ARPLLG
Trigger: ACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATA...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGAAGTATGGCTGTCTTaGAGTTTGGGAGTGTGGCCG +
Preference number: 2 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHEVWLS*SLGVWP
Trigger: CGGCCACACTCCCAAACTCCAAGACAGCCATACTTC...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGAGCAAGACCTCTCCTTaGTACCATTTCGCTGGAAGT +
Preference number: 2 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWSKTSP*YHFAGS
Trigger: ACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGATCAATGGGACATCTTaGAAACATCTGAAGTTACAT +
Preference number: 2 (lower is better)
Translates to: TQLQFLTTEALHAGCRERINGTS*KHLKLH
Trigger: ATGTAACTTCAGATGTTTCCAAGATGTCCCATTGAT...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
3UTR-3UTR CCA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAAGATAGTGCTCACATATaGAGAGTCCCTGTGAGCAAG +
Preference number: 2 (lower is better)
Translates to: FQKVVCSNYQWDILETSEDSAHI*RVPVSK
Trigger: CTTGCTCACAGGGACTCTCCATATGTGAGCACTATC...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR TCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTAATGATACTGGGCATCTaGGTGTCAGTCATCGTATCC +
Preference number: 2 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLMILGI*VSVIVS
Trigger: GGATACGATGACTGACACTCAGATGCCCAGTATCAT...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR TCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGATGATACTGGGCATCTaGGTGTCAGTCATCGTATCC +
Preference number: 2 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEMILGI*VSVIVS
Trigger: GGATACGATGACTGACACTCAGATGCCCAGTATCAT...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTTTGGTACCATTTCGCTaGAAGTATGGCTGTCTTGGA +
Preference number: 2 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPLVPFR*KYGCLG
Trigger: TCCAAGACAGCCATACTTCCAGCGAAATGGTACCAA...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGGATAGTGCTCACATATaGAGAGTCCCTGTGAGCAAG +
Preference number: 2 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEDSAHI*RVPVSK
Trigger: CTTGCTCACAGGGACTCTCCATATGTGAGCACTATC...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGATTTCGCTGGAAGTATaGCTGTCTTGGAGTTTGGGA +
Preference number: 2 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEISLEV*LSWSLG
Trigger: TCCCAAACTCCAAGACAGCCATACTTCCAGCGAAAT...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTATTGGTACCATTTCGCTaGAAGTATGGCTGTCTTGGA +
Preference number: 2 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLLVPFR*KYGCLG
Trigger: TCCAAGACAGCCATACTTCCAGCGAAATGGTACCAA...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGATCAATGGGACATCTTaGAAACATCTGAAGTTACAT +
Preference number: 2 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEINGTS*KHLKLH
Trigger: ATGTAACTTCAGATGTTTCCAAGATGTCCCATTGAT...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CAA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGGAAGTATGGCTGTCTaGGAGTTTGGGAGTGTGGCC +
Preference number: 3 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYGSMAV*EFGSVA
Trigger: GGCCACACTCCCAAACTCCAAGACAGCCATACTTCC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR CCA 72 bp CACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTaGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAG +
Preference number: 3 (lower is better)
Translates to: HIWRVPVSKTSP*YHFAGSMAVLE
Trigger: CTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CAA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAAGAGCAAGACCTCTCCTaGGTACCATTTCGCTGGAAG +
Preference number: 3 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKEQDLS*VPFRWK
Trigger: CTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCTC...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
3UTR-3UTR CAA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAAGGAAGTATGGCTGTCTaGGAGTTTGGGAGTGTGGCC +
Preference number: 3 (lower is better)
Translates to: FQKVVCSNYQWDILETSEGSMAV*EFGSVA
Trigger: GGCCACACTCCCAAACTCCAAGACAGCCATACTTCC...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR CCA 72 bp ACATGCAAAAATTTCCTGAAAGATAGTGCTCACATATaGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTAC +
Preference number: 3 (lower is better)
Translates to: TCKNFLKDSAHI*RVPVSKTSPWY
Trigger: GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CAA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTAGGAAGTATGGCTGTCTaGGAGTTTGGGAGTGTGGCC +
Preference number: 3 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLGSMAV*EFGSVA
Trigger: GGCCACACTCCCAAACTCCAAGACAGCCATACTTCC...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CAA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGTGCCTGCATAAAAGTTaGCCTATTCTATTTCTTCGT +
Preference number: 3 (lower is better)
Translates to: TQLQFLTTEALHAGCRERCLHKS*PILFLR
Trigger: ACGAAGAAATAGAATAGGCAAACTTTTATGCAGGCA...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
3UTR-3UTR CAA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGGAGCAAGACCTCTCCTaGGTACCATTTCGCTGGAAG +
Preference number: 3 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEEQDLS*VPFRWK
Trigger: CTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCTC...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR TCA 72 bp AGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTaGGAATGTCATCAAAACACTGTTTGTTTTAACATC +
Preference number: 3 (lower is better)
Translates to: SVSETAITWAKC*ECHQNTVCFNI
Trigger: GATGTTAAAACAAACAGTGTTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
3UTR TCA 72 bp TTGTTTGTAAACTATCAACGTATGATACTGGGCATCTaGGTGTCAGTCATCGTATCCTGTTTTTCCAGAAAG +
Preference number: 3 (lower is better)
Translates to: LFVNYQRMILGI*VSVIVSCFSRK
Trigger: CTTTCTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGATAGTTTACAAACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR-3UTR CAA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGTTTCCAGAAAGTTGTTaGCTCGAATTATCAATGGGA +
Preference number: 3 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEFPESC*LELSMG
Trigger: TCCCATTGATAATTCGAGCAAACAACTTTCTGGAAA...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
3UTR CCA 72 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTaGTCAACTAATAATCATGGAGAGTTTCCTAAAATA +
Preference number: 3 (lower is better)
Translates to: RALYDLCFSQYS*STNNHGEFPKI
Trigger: TATTTTAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGGTCACCGCCCCATGCTaGCAGCGCGAACTTCCCCGG +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWVTAPC*QRELPR
Trigger: CCGGGGAAGTTCGCGCTGGCAGCATGGGGCGGTGAC...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCAGCAAATGCGCCCTTaGCCGAGCTGGGCGGAGGGG +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWQQMRP*PSWAEG
Trigger: CCCCTCCGCCCAGCTCGGCCAAGGGCGCATTTGCTG...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS-3UTR TCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGCGGTCCTCACCTGAGTaGTGCGCTCTCCCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLRSSPE*CALPAR
Trigger: CCGGGCTGGGAGAGCGCATCACTCAGGTGAGGACCG...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGATGTCGGTCCTCACCTaGGTGATGCGCTCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPMSVLT*VMRSPS
Trigger: GCTGGGAGAGCGCATCACTCAGGTGAGGACCGACAT...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGAGCTACTCCTCTCTCTaGAAGGCACTCGCCCGAGCG +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPSYSSL*KALARA
Trigger: CGCTCGGGCGAGTGCCTTGCAGAGAGAGGAGTAGCT...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000335625.10
CDS-3UTR CCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGCCACCACCGACTTGGTaGAGCCGTTGGTCCAGACGT +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPPPPTW*SRWSRR
Trigger: ACGTCTGGACCAACGGCTCCACCAAGTCGGTGGTGG...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGTGGCGTAGGCCACTTTaGGCAGAGAGTTCCTGGCGC +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPWRRPL*AESSWR
Trigger: GCGCCAGGAACTCTCTGCCCAAAGTGGCCTACGCCA...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAACGGTCCTCACCTGAGTaGTGCGCTCTCCCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKRSSPE*CALPAR
Trigger: CCGGGCTGGGAGAGCGCATCACTCAGGTGAGGACCG...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGCCACATGTCGTCTCTaGGCTGGAGGATCGGCCCTC +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLATCRL*AGGSAL
Trigger: GAGGGCCGATCCTCCAGCCCAGAGACGACATGTGGC...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000355395.9
CDS-3UTR TCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGTGTCCTGGCTGGGACTaGTTCCCGGTTCAGCCAAAA +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPCPGWD*FPVQPK
Trigger: TTTTGGCTGAACCGGGAATCAGTCCCAGCCAGGACA...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGGGGAAGTCCTCAAGCTaGATGGGGCACTCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWGKSSS*MGHSAE
Trigger: CTCTGCAGAGTGCCCCATGCAGCTTGAGGACTTCCC...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGTCAGTGCCCACCGTCTaGCCCATCAGGTGGTACTGG +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLSVPTV*PIRWYW
Trigger: CCAGTACCACCTGATGGGGCAGACGGTGGGCACTGA...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGTATGGAGAGTCCCTGTaGGCAAGACCTCTCCTTGGT +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPYGESL*ARPLLG
Trigger: ACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATA...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCTGCATGGGGCACTCTaGAGAGATGGTCAAGCGCAT +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWLHGAL*RDGQAH
Trigger: ATGCGCTTGACCATCTCTGCAGAGTGCCCCATGCAG...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGGAAGTCCTCAAGCTaGATGGGGCACTCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLGKSSS*MGHSAE
Trigger: CTCTGCAGAGTGCCCCATGCAGCTTGAGGACTTCCC...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAAGCCACATGTCGTCTCTaGGCTGGAGGATCGGCCCTC +
Preference number: 4 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKATCRL*AGGSAL
Trigger: GAGGGCCGATCCTCCAGCCCAGAGACGACATGTGGC...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000335625.10
CDS-3UTR CCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGAGATGGTCAAGCGCATaGTGTAGAGCAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWRWSSA*CRAGCR
Trigger: ACGGCACCCTGCTCTACACCATGCGCTTGACCATCT...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGGGTACTGGTTCAGTCTaGAGCCATCTTCCGCCACCA +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWGTGSV*SHLPPP
Trigger: TGGTGGCGGAAGATGGCTCCAGACTGAACCAGTACC...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGGAAGTATGGCTGTCTTaGAGTTTGGGAGTGTGGCCG +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPEVWLS*SLGVWP
Trigger: CGGCCACACTCCCAAACTCCAAGACAGCCATACTTC...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGTATGGAGAGTCCCTGTaGGCAAGACCTCTCCTTGGT +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWYGESL*ARPLLG
Trigger: ACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATA...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGTGGTGTAGAGCAGGGTaGCGTCGTCCTCCAGCCGCA +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQWCRAG*RRPPAA
Trigger: TGCGGCTGGAGGACGACGGCACCCTGCTCTACACCA...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGGGGAAGTCCTCAAGCTaGATGGGGCACTCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: TQLQFLTTEALHAGCRERGKSSS*MGHSAE
Trigger: CTCTGCAGAGTGCCCCATGCAGCTTGAGGACTTCCC...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR GCA 90 bp ATGTCCAAGTTTCCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGGCCCCCGGCTCGGCCTaGAAGGGGAGAGGCCCTGTT +
Preference number: 4 (lower is better)
Translates to: MSKFPHNGKRALYDLCFSAPGSA*KGRGPV
Trigger: AACAGGGCCTCTCCCCTTGCAGGCCGAGCCGGGGGC...CGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGGAAACTTGGACAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS-3UTR CCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGCCCCAAAAACTGTCCTaGCTGGGACTGATTCCCGGT +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLPQKLS*LGLIPG
Trigger: ACCGGGAATCAGTCCCAGCCAGGACAGTTTTTGGGG...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGTTCCTTCGGAATGTTTaGGGGGTGAGACATCTTCCC +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPFLRNV*GVRHLP
Trigger: GGGAAGATGTCTCACCCCCCAAACATTCCGAAGGAA...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGCGGTCCTCACCTGAGTaGTGCGCTCTCCCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWRSSPE*CALPAR
Trigger: CCGGGCTGGGAGAGCGCATCACTCAGGTGAGGACCG...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGTGGCAAGGAGGTTGTTaGGAGGGAGGCGCTGCATGG +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQWQGGC*EGGAAW
Trigger: CCATGCAGCGCCTCCCTCTCAACAACCTCCTTGCCA...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGCGCCTGTGCTGGTGCTaGTGTTCTCAGTGCCCACCG +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKRLCWC*CSQCPP
Trigger: CGGTGGGCACTGAGAACATCAGCACCAGCACAGGCG...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACTGTCCTGGCTGGGACTaGTTCCCGGTTCAGCCAAAA +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYCPGWD*FPVQPK
Trigger: TTTTGGCTGAACCGGGAATCAGTCCCAGCCAGGACA...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGTGTCCTGGCTGGGACTaGTTCCCGGTTCAGCCAAAA +
Preference number: 4 (lower is better)
Translates to: TQLQFLTTEALHAGCRERCPGWD*FPVQPK
Trigger: TTTTGGCTGAACCGGGAATCAGTCCCAGCCAGGACA...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR GCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGTGTATTCGACGTCCCTaGTGGGGTCTGTTCCTTCGG +
Preference number: 4 (lower is better)
Translates to: TQLQFLTTEALHAGCRERCIRRP*WGLFLR
Trigger: CCGAAGGAACAGACCCCAGCAGGGACGTCGAATACA...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR GCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACTGTATTCGACGTCCCTaGTGGGGTCTGTTCCTTCGG +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYCIRRP*WGLFLR
Trigger: CCGAAGGAACAGACCCCAGCAGGGACGTCGAATACA...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp ATGTCCAAGTTTCCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGGGCGTCACCGCCCCATaGTGCCAGCGCGAACTTCCC +
Preference number: 4 (lower is better)
Translates to: MSKFPHNGKRALYDLCFSGVTAP*CQRELP
Trigger: GGGAAGTTCGCGCTGGCAGCATGGGGCGGTGACGCC...CGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGGAAACTTGGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000400081.7
CDS-3UTR GCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGTCTCTGCAAGGCACCTaGGCGCCGGCCCCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMESLQGT*APAPGG
Trigger: GCCTCCCGGGGCCGGCGCGCAGGTGCCTTGCAGAGA...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000400081.7
CDS-3UTR CCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGACTTCTTCCCGTTGTaGAAGAACGTGTCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLDFFPL*KNVSGV
Trigger: GACCCCAGACACGTTCTTCCACAACGGGAAGAAGTC...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGTCATGTTGTGAGCGATaGACTTCTTCCCGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPSCCER*TSSRCG
Trigger: TCCACAACGGGAAGAAGTCCATCGCTCACAACATGA...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGCACTCTGCAGAGATaGTCAAGCGCATGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLGTLQR*SSAWCR
Trigger: TCTACACCATGCGCTTGACCATCTCTGCAGAGTGCC...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACAGTCCTCAAGCTGCATaGGGCACTCTGCAGAGATGG +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYSPQAA*GTLQRW
Trigger: CCATCTCTGCAGAGTGCCCCATGCAGCTTGAGGACT...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGACTTGGTGGAGCCGTTaGTCCAGACGTAAACGACTT +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWTWWSR*SRRKRL
Trigger: AAGTCGTTTACGTCTGGACCAACGGCTCCACCAAGT...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp AGCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGTACTGGTTCAGTCTaGAGCCATCTTCCGCCACCA +
Preference number: 4 (lower is better)
Translates to: SKTSPWYHFAGSMAVLEFGTGSV*SHLPPP
Trigger: TGGTGGCGGAAGATGGCTCCAGACTGAACCAGTACC...AAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGCCCATCAGGTGGTACTaGTTCAGTCTGGAGCCATCT +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLPIRWY*FSLEPS
Trigger: AGATGGCTCCAGACTGAACCAGTACCACCTGATGGG...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGCCCCAAAAACTGTCCTaGCTGGGACTGATTCCCGGT +
Preference number: 4 (lower is better)
Translates to: TQLQFLTTEALHAGCRERPQKLS*LGLIPG
Trigger: ACCGGGAATCAGTCCCAGCCAGGACAGTTTTTGGGG...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGTGGCGTAGGCCACTTTaGGCAGAGAGTTCCTGGCGC +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQWRRPL*AESSWR
Trigger: GCGCCAGGAACTCTCTGCCCAAAGTGGCCTACGCCA...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAAGTGAGCTGTCATaGTTGTGTATTCGCCTGTGC +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLGSELS*LCIRLC
Trigger: GCACAGGCGAATACACAATCATGACAGCTCACTTCC...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGTGGTCAGCACCGTGGTaGCCCCAAAAACTGTCCTGG +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQWSAPW*PQKLSW
Trigger: CCAGGACAGTTTTTGGGGTCACCACGGTGCTGACCA...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGTTCAGAGGGCAAGCGTaGGCATCCATCGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQFRGQA*ASIGKS
Trigger: GGACTTCCCGATGGATGCGCACGCTTGCCCTCTGAA...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGCCACCACCGACTTGGTaGAGCCGTTGGTCCAGACGT +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKPPPTW*SRWSRR
Trigger: ACGTCTGGACCAACGGCTCCACCAAGTCGGTGGTGG...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGAGTGCCGAACAAGACTaGGAATACGATTCGGGACAT +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWSAEQD*EYDSGH
Trigger: ATGTCCCGAATCGTATTCCCAGTCTTGTTCGGCACT...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGAGCAAGACCTCTCCTTaGTACCATTTCGCTGGAAGT +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWSKTSP*YHFAGS
Trigger: ACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGGATAGTGCTCACATATaGAGAGTCCCTGTGAGCAAG +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWDSAHI*RVPVSK
Trigger: CTTGCTCACAGGGACTCTCCATATGTGAGCACTATC...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp AGCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGCTGTAGGGAGAGGTaGTCAGTGTTTCAGAGACAG +
Preference number: 4 (lower is better)
Translates to: SKTSPWYHFAGSMAVLEFGCRER*SVFQRQ
Trigger: CTGTCTCTGAAACACTGACCACCTCTCCCTACAGCC...AAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGGCTGTAGGGAGAGGTaGTCAGTGTTTCAGAGACAG +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYGCRER*SVFQRQ
Trigger: CTGTCTCTGAAACACTGACCACCTCTCCCTACAGCC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGATGTCGTCTCTGGGCTaGAGGATCGGCCCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKMSSLG*RIGPLQ
Trigger: CTGCAGAGGGCCGATCCTCCAGCCCAGAGACGACAT...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000355395.9
3UTR CAA 72 bp TCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTaGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGA +
Preference number: 4 (lower is better)
Translates to: SHMESPCEQDLS*VPFRWKYGCLG
Trigger: TCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp ATGTCCAAGTTTCCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCGCCTGTGCTGGTGCTaGTGTTCTCAGTGCCCACCG +
Preference number: 4 (lower is better)
Translates to: MSKFPHNGKRALYDLCFSRLCWC*CSQCPP
Trigger: CGGTGGGCACTGAGAACATCAGCACCAGCACAGGCG...CGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGGAAACTTGGACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp AGCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGAAGTGAGCTGTCATaGTTGTGTATTCGCCTGTGC +
Preference number: 4 (lower is better)
Translates to: SKTSPWYHFAGSMAVLEFGSELS*LCIRLC
Trigger: GCACAGGCGAATACACAATCATGACAGCTCACTTCC...AAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGTTGAGAGGGAGGCGCTaGATGGGCCCCTTAAACCGA +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKLRGRR*MGPLNR
Trigger: TCGGTTTAAGGGGCCCATGCAGCGCCTCCCTCTCAA...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGGGCCCTCTGCAGAGGTaGTCCGGTAGAGGCCGCCAG +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEGPLQR*SGRGRQ
Trigger: CTGGCGGCCTCTACCGGAGCACCTCTGCAGAGGGCC...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS-3UTR GCA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGAGCTACTCCTCTCTCTaGAAGGCACCTGCGCGCCGG +
Preference number: 4 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWSYSSL*KAPARR
Trigger: CCGGCGCGCAGGTGCCTTGCAGAGAGAGGAGTAGCT...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000400081.7
CDS-3UTR CCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGAGATGGTCAAGCGCATaGTGTAGAGCAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQRWSSA*CRAGCR
Trigger: ACGGCACCCTGCTCTACACCATGCGCTTGACCATCT...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGGTCTGCCCCATCAGGTaGTACTGGTTCAGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQVCPIR*YWFSLE
Trigger: CTCCAGACTGAACCAGTACCACCTGATGGGGCAGAC...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGTGTGGCCGGTTATTTTaGAGAGGCGGCTCCTTTTAT +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLCGRLF*RGGSFY
Trigger: ATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACA...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGGCTGTCTTGGAGTTTaGGAGTGTGGCCGGTTATTT +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYGCLGV*ECGRLF
Trigger: AAATAACCGGCCACACTCCCAAACTCCAAGACAGCC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGTGTTCAGGTAGTGGGTaGTGTGGGGTAAGAAATGTT +
Preference number: 4 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWCSGSG*CGVRNV
Trigger: AACATTTCTTACCCCACACCACCCACTACCTGAACA...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR TCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGTTCTTGAAGCTTTCTaGAATATCTGCCACGCCACG +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYVLEAF*NICHAT
Trigger: CGTGGCGTGGCAGATATTTCAGAAAGCTTCAAGAAC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR TCA 90 bp AGCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTCTTCACGCTTTTTCTTaGTCTTGGCTGCTTCCAAGG +
Preference number: 4 (lower is better)
Translates to: SKTSPWYHFAGSMAVLEFLHAFS*SWLLPR
Trigger: CCTTGGAAGCAGCCAAGATCAAGAAAAAGCGTGAAG...AAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGCTGCATGGGGCACTCTaGAGAGATGGTCAAGCGCAT +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKLHGAL*RDGQAH
Trigger: ATGCGCTTGACCATCTCTGCAGAGTGCCCCATGCAG...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGAGTCCTCAAGCTGCATaGGGCACTCTGCAGAGATGG +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKSPQAA*GTLQRW
Trigger: CCATCTCTGCAGAGTGCCCCATGCAGCTTGAGGACT...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACAGTGCCGAACAAGACTaGGAATACGATTCGGGACAT +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYSAEQD*EYDSGH
Trigger: ATGTCCCGAATCGTATTCCCAGTCTTGTTCGGCACT...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGAGTGCCGAACAAGACTaGGAATACGATTCGGGACAT +
Preference number: 4 (lower is better)
Translates to: TQLQFLTTEALHAGCRERSAEQD*EYDSGH
Trigger: ATGTCCCGAATCGTATTCCCAGTCTTGTTCGGCACT...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACTGTGGCCGGTTATTTTaGAGAGGCGGCTCCTTTTAT +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYCGRLF*RGGSFY
Trigger: ATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACA...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAATGGAGTTTGGGAGTGTaGCCGGTTATTTTGGAGAGG +
Preference number: 4 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKWSLGV*PVILER
Trigger: CCTCTCCAAAATAACCGGCCACACTCCCAAACTCCA...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGATAGTGCTCACATATaGAGAGTCCCTGTGAGCAAG +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYDSAHI*RVPVSK
Trigger: CTTGCTCACAGGGACTCTCCATATGTGAGCACTATC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATCCGGGCCGAAGCTGGTaGCGTAGATGTCGGTCCTCA +
Preference number: 4 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHPGRSW*RRCRSS
Trigger: TGAGGACCGACATCTACGTCACCAGCTTCGGCCCGG...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTACCGGGCCGAAGCTGGTaGCGTAGATGTCGGTCCTCA +
Preference number: 4 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLPGRSW*RRCRSS
Trigger: TGAGGACCGACATCTACGTCACCAGCTTCGGCCCGG...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGCGCCTGTGCTGGTGCTaGTGTTCTCAGTGCCCACCG +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGERLCWC*CSQCPP
Trigger: CGGTGGGCACTGAGAACATCAGCACCAGCACAGGCG...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGACAATTTCTCACCACTaGAGCACTACACGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQTISHH*STTRWL
Trigger: CAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGT...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR GCA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTTCAGAGGGCAAGCGTaGGCATCCATCGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWFRGQA*ASIGKS
Trigger: GGACTTCCCGATGGATGCGCACGCTTGCCCTCTGAA...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAATCAGTGCCCACCGTCTaGCCCATCAGGTGGTACTGG +
Preference number: 4 (lower is better)
Translates to: FQKVVCSNYQWDILETSESVPTV*PIRWYW
Trigger: CCAGTACCACCTGATGGGGCAGACGGTGGGCACTGA...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGGATCGGCCCTCTaGAGAGGTGCTCCGGTAGAG +
Preference number: 4 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHGGSAL*RGAPVE
Trigger: CTCTACCGGAGCACCTCTGCAGAGGGCCGATCCTCC...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS-3UTR CCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGGACTTCTTCCCGTTGTaGAAGAACGTGTCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKDFFPL*KNVSGV
Trigger: GACCCCAGACACGTTCTTCCACAACGGGAAGAAGTC...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTCCACCACCGACTTGGTaGAGCCGTTGGTCCAGACGT +
Preference number: 4 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPPPPTW*SRWSRR
Trigger: ACGTCTGGACCAACGGCTCCACCAAGTCGGTGGTGG...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp AGCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTATTTCGCTGGAAGTATaGCTGTCTTGGAGTTTGGGA +
Preference number: 4 (lower is better)
Translates to: SKTSPWYHFAGSMAVLEFISLEV*LSWSLG
Trigger: TCCCAAACTCCAAGACAGCCATACTTCCAGCGAAAT...AAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACTTGGTACCATTTCGCTaGAAGTATGGCTGTCTTGGA +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYLVPFR*KYGCLG
Trigger: TCCAAGACAGCCATACTTCCAGCGAAATGGTACCAA...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACAATGTCGGTCCTCACCTaGGTGATGCGCTCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTMSVLT*VMRSPS
Trigger: GCTGGGAGAGCGCATCACTCAGGTGAGGACCGACAT...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR TCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGATGTCGGTCCTCACCTaGGTGATGCGCTCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEMSVLT*VMRSPS
Trigger: GCTGGGAGAGCGCATCACTCAGGTGAGGACCGACAT...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGTGGCAAGGAGGTTGTTaGGAGGGAGGCGCTGCATGG +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEWQGGC*EGGAAW
Trigger: CCATGCAGCGCCTCCCTCTCAACAACCTCCTTGCCA...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAATGGTCAGCACCGTGGTaGCCCCAAAAACTGTCCTGG +
Preference number: 4 (lower is better)
Translates to: FQKVVCSNYQWDILETSEWSAPW*PQKLSW
Trigger: CCAGGACAGTTTTTGGGGTCACCACGGTGCTGACCA...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGATGATACTGGGCATCTaGGTGTCAGTCATCGTATCC +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQMILGI*VSVIVS
Trigger: GGATACGATGACTGACACTCAGATGCCCAGTATCAT...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAAACATGGGCCAAGTGCTaGGAATGTCATCAAAACACT +
Preference number: 4 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKTWAKC*ECHQNT
Trigger: AGTGTTTTGATGACATTCTCAGCACTTGGCCCATGT...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR GCA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTTTGAGAGGGAGGCGCTaGATGGGCCCCTTAAACCGA +
Preference number: 4 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPLRGRR*MGPLNR
Trigger: TCGGTTTAAGGGGCCCATGCAGCGCCTCCCTCTCAA...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGTCAGTGCCCACCGTCTaGCCCATCAGGTGGTACTGG +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMESVPTV*PIRWYW
Trigger: CCAGTACCACCTGATGGGGCAGACGGTGGGCACTGA...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGAGATCACGGTCATTATaGAGGGAAGGTAGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQRSRSL*REGRSG
Trigger: TCCAGACCTACCTTCCCTGCATAATGACCGTGATCT...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGGAAAAACACGTCTATaGTGTACTCCATTTCCGTGT +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYGKTRL*CTPFPC
Trigger: ACACGGAAATGGAGTACACCATAGACGTGTTTTTCC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGTCATGTTGTGAGCGATaGACTTCTTCCCGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQSCCER*TSSRCG
Trigger: TCCACAACGGGAAGAAGTCCATCGCTCACAACATGA...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGCCACCACCACCGACTTaGTGGAGCCGTTGGTCCAGA +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEPPPPT*WSRWSR
Trigger: TCTGGACCAACGGCTCCACCAAGTCGGTGGTGGTGG...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGCCACCACCACCGACTTaGTGGAGCCGTTGGTCCAGA +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEPPPPT*WSRWSR
Trigger: TCTGGACCAACGGCTCCACCAAGTCGGTGGTGGTGG...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACACCACCACCACCGACTTaGTGGAGCCGTTGGTCCAGA +
Preference number: 4 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTPPPPT*WSRWSR
Trigger: TCTGGACCAACGGCTCCACCAAGTCGGTGGTGGTGG...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR TCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGTGGTCAGCACCGTGGTaGCCCCAAAAACTGTCCTGG +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEWSAPW*PQKLSW
Trigger: CCAGGACAGTTTTTGGGGTCACCACGGTGCTGACCA...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATTTGAGAGGGAGGCGCTaGATGGGCCCCTTAAACCGA +
Preference number: 4 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHLRGRR*MGPLNR
Trigger: TCGGTTTAAGGGGCCCATGCAGCGCCTCCCTCTCAA...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR GCA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAACTGCATGGGGCACTCTaGAGAGATGGTCAAGCGCAT +
Preference number: 4 (lower is better)
Translates to: FQKVVCSNYQWDILETSELHGAL*RDGQAH
Trigger: ATGCGCTTGACCATCTCTGCAGAGTGCCCCATGCAG...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ATGTCCAAGTTTCCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGGGCACTCTGCAGAGATaGTCAAGCGCATGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: MSKFPHNGKRALYDLCFSGTLQR*SSAWCR
Trigger: TCTACACCATGCGCTTGACCATCTCTGCAGAGTGCC...CGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGGAAACTTGGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAATCTCCAGCTTGTTCTTaGAGCTTTCTGAAATATCTG +
Preference number: 4 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKSPACS*SFLKYL
Trigger: CAGATATTTCAGAAAGCTTCAAGAACAAGCTGGAGA...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR TCA 90 bp ATGTCCAAGTTTCCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGGGAAGTGAGCTGTCATaGTTGTGTATTCGCCTGTGC +
Preference number: 4 (lower is better)
Translates to: MSKFPHNGKRALYDLCFSGSELS*LCIRLC
Trigger: GCACAGGCGAATACACAATCATGACAGCTCACTTCC...CGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGGAAACTTGGACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAATTCATATACAAAAGCTaGCAGAGCAGTAAGTCCAGT +
Preference number: 4 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKFIYKS*QSSKSS
Trigger: ACTGGACTTACTGCTCTGTCAGCTTTTGTATATGAA...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGAAAAGCCAAAGTGACTaGATAAGTTCATGGAAATAC +
Preference number: 4 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLKSQSD*ISSWKY
Trigger: GTATTTCCATGAACTTATCCAGTCACTTTGGCTTTT...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGATGGTCAAGCGCATaGTGTAGAGCAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMERWSSA*CRAGCR
Trigger: ACGGCACCCTGCTCTACACCATGCGCTTGACCATCT...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTAGGTACTGGTTCAGTCTaGAGCCATCTTCCGCCACCA +
Preference number: 4 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLGTGSV*SHLPPP
Trigger: TGGTGGCGGAAGATGGCTCCAGACTGAACCAGTACC...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGGTCTGCCCCATCAGGTaGTACTGGTTCAGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEVCPIR*YWFSLE
Trigger: CTCCAGACTGAACCAGTACCACCTGATGGGGCAGAC...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACAGTCTGCCCCATCAGGTaGTACTGGTTCAGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTVCPIR*YWFSLE
Trigger: CTCCAGACTGAACCAGTACCACCTGATGGGGCAGAC...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTTCCTTCGGAATGTTTaGGGGGTGAGACATCTTCCC +
Preference number: 4 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWFLRNV*GVRHLP
Trigger: GGGAAGATGTCTCACCCCCCAAACATTCCGAAGGAA...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAAATTCGACGTCCCTGCTaGGGTCTGTTCCTTCGGAAT +
Preference number: 4 (lower is better)
Translates to: FQKVVCSNYQWDILETSEIRRPC*GLFLRN
Trigger: ATTCCGAAGGAACAGACCCCAGCAGGGACGTCGAAT...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTGAAGTATGGCTGTCTTaGAGTTTGGGAGTGTGGCCG +
Preference number: 4 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPEVWLS*SLGVWP
Trigger: CGGCCACACTCCCAAACTCCAAGACAGCCATACTTC...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGTTGGTACCATTTCGCTaGAAGTATGGCTGTCTTGGA +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKLVPFR*KYGCLG
Trigger: TCCAAGACAGCCATACTTCCAGCGAAATGGTACCAA...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGCTTCACGCTTTTTCTTaGTCTTGGCTGCTTCCAAGG +
Preference number: 4 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWLHAFS*SWLLPR
Trigger: CCTTGGAAGCAGCCAAGATCAAGAAAAAGCGTGAAG...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGAAAAGCCAAAGTGACTaGATAAGTTCATGGAAATAC +
Preference number: 4 (lower is better)
Translates to: TQLQFLTTEALHAGCRERKSQSD*ISSWKY
Trigger: GTATTTCCATGAACTTATCCAGTCACTTTGGCTTTT...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGGACTTCTTCCCGTTGTaGAAGAACGTGTCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEDFFPL*KNVSGV
Trigger: GACCCCAGACACGTTCTTCCACAACGGGAAGAAGTC...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGCCCATCAGGTGGTACTaGTTCAGTCTGGAGCCATCT +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEPIRWY*FSLEPS
Trigger: AGATGGCTCCAGACTGAACCAGTACCACCTGATGGG...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATCCCATCAGGTGGTACTaGTTCAGTCTGGAGCCATCT +
Preference number: 4 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHPIRWY*FSLEPS
Trigger: AGATGGCTCCAGACTGAACCAGTACCACCTGATGGG...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATATTCGACGTCCCTGCTaGGGTCTGTTCCTTCGGAAT +
Preference number: 4 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHIRRPC*GLFLRN
Trigger: ATTCCGAAGGAACAGACCCCAGCAGGGACGTCGAAT...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTAATTCGACGTCCCTGCTaGGGTCTGTTCCTTCGGAAT +
Preference number: 4 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLIRRPC*GLFLRN
Trigger: ATTCCGAAGGAACAGACCCCAGCAGGGACGTCGAAT...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTGGCTGTCTTGGAGTTTaGGAGTGTGGCCGGTTATTT +
Preference number: 4 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPGCLGV*ECGRLF
Trigger: AAATAACCGGCCACACTCCCAAACTCCAAGACAGCC...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACAGAAGTATGGCTGTCTTaGAGTTTGGGAGTGTGGCCG +
Preference number: 4 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTEVWLS*SLGVWP
Trigger: CGGCCACACTCCCAAACTCCAAGACAGCCATACTTC...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACATCAATGGGACATCTTaGAAACATCTGAAGTTACAT +
Preference number: 4 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYINGTS*KHLKLH
Trigger: ATGTAACTTCAGATGTTTCCAAGATGTCCCATTGAT...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAAATGATACTGGGCATCTaGGTGTCAGTCATCGTATCC +
Preference number: 4 (lower is better)
Translates to: FQKVVCSNYQWDILETSEMILGI*VSVIVS
Trigger: GGATACGATGACTGACACTCAGATGCCCAGTATCAT...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGACAATTTCTCACCACTaGAGCACTACACGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGETISHH*STTRWL
Trigger: CAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGT...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGACTTGGTGGAGCCGTTaGTCCAGACGTAAACGACTT +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGETWWSR*SRRKRL
Trigger: AAGTCGTTTACGTCTGGACCAACGGCTCCACCAAGT...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACAACTTGGTGGAGCCGTTaGTCCAGACGTAAACGACTT +
Preference number: 4 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTTWWSR*SRRKRL
Trigger: AAGTCGTTTACGTCTGGACCAACGGCTCCACCAAGT...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTATGGAGTTTGGGAGTGTaGCCGGTTATTTTGGAGAGG +
Preference number: 4 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLWSLGV*PVILER
Trigger: CCTCTCCAAAATAACCGGCCACACTCCCAAACTCCA...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGCTGTCTTGGAGTTTaGGAGTGTGGCCGGTTATTT +
Preference number: 4 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHGCLGV*ECGRLF
Trigger: AAATAACCGGCCACACTCCCAAACTCCAAGACAGCC...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGGTTCTTGAAGCTTTCTaGAATATCTGCCACGCCACG +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEVLEAF*NICHAT
Trigger: CGTGGCGTGGCAGATATTTCAGAAAGCTTCAAGAAC...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR TCA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATACTGGTTGGCATCTGTaGAAAGCCAAAGTGACTGGA +
Preference number: 4 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHTGWHL*KAKVTG
Trigger: TCCAGTCACTTTGGCTTTTCACAGATGCCAACCAGT...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACACTTCACGCTTTTTCTTaGTCTTGGCTGCTTCCAAGG +
Preference number: 4 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTLHAFS*SWLLPR
Trigger: CCTTGGAAGCAGCCAAGATCAAGAAAAAGCGTGAAG...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR TCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGATGATACTGGGCATCTaGGTGTCAGTCATCGTATCC +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEMILGI*VSVIVS
Trigger: GGATACGATGACTGACACTCAGATGCCCAGTATCAT...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTACATGGGCCAAGTGCTaGGAATGTCATCAAAACACT +
Preference number: 4 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPTWAKC*ECHQNT
Trigger: AGTGTTTTGATGACATTCTCAGCACTTGGCCCATGT...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR GCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGAGATCACGGTCATTATaGAGGGAAGGTAGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGERSRSL*REGRSG
Trigger: TCCAGACCTACCTTCCCTGCATAATGACCGTGATCT...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTCATGTTGTGAGCGATaGACTTCTTCCCGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGESCCER*TSSRCG
Trigger: TCCACAACGGGAAGAAGTCCATCGCTCACAACATGA...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTATGTGGCCGGTTATTTTaGAGAGGCGGCTCCTTTTAT +
Preference number: 4 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLCGRLF*RGGSFY
Trigger: ATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACA...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTAAGCAAGACCTCTCCTTaGTACCATTTCGCTGGAAGT +
Preference number: 4 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLSKTSP*YHFAGS
Trigger: ACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGGATAGTGCTCACATATaGAGAGTCCCTGTGAGCAAG +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEDSAHI*RVPVSK
Trigger: CTTGCTCACAGGGACTCTCCATATGTGAGCACTATC...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGATCAATGGGACATCTTaGAAACATCTGAAGTTACAT +
Preference number: 4 (lower is better)
Translates to: STYDTGHLSVSHRILFFQINGTS*KHLKLH
Trigger: ATGTAACTTCAGATGTTTCCAAGATGTCCCATTGAT...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR TCA 90 bp ATGTCCAAGTTTCCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGTCTCCAGCTTGTTCTTaGAGCTTTCTGAAATATCTG +
Preference number: 4 (lower is better)
Translates to: MSKFPHNGKRALYDLCFSSPACS*SFLKYL
Trigger: CAGATATTTCAGAAAGCTTCAAGAACAAGCTGGAGA...CGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGGAAACTTGGACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CCA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGAAAAGCCAAAGTGACTaGATAAGTTCATGGAAATAC +
Preference number: 4 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKKSQSD*ISSWKY
Trigger: GTATTTCCATGAACTTATCCAGTCACTTTGGCTTTT...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAAGGAAAAACACGTCTATaGTGTACTCCATTTCCGTGT +
Preference number: 4 (lower is better)
Translates to: FQKVVCSNYQWDILETSEGKTRL*CTPFPC
Trigger: ACACGGAAATGGAGTACACCATAGACGTGTTTTTCC...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp ATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTAATTTCGCTGGAAGTATaGCTGTCTTGGAGTTTGGGA +
Preference number: 4 (lower is better)
Translates to: ISVSRNIVGQLIIMESFLISLEV*LSWSLG
Trigger: TCCCAAACTCCAAGACAGCCATACTTCCAGCGAAAT...TAGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGTTGGTACCATTTCGCTaGAAGTATGGCTGTCTTGGA +
Preference number: 4 (lower is better)
Translates to: LFMISVSRNIVGQLIIMELVPFR*KYGCLG
Trigger: TCCAAGACAGCCATACTTCCAGCGAAATGGTACCAA...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTGTTCAGGTAGTGGGTaGTGTGGGGTAAGAAATGTT +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGECSGSG*CGVRNV
Trigger: AACATTTCTTACCCCACACCACCCACTACCTGAACA...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
3UTR CAA 72 bp TGTCAGTCATCGTATCCTGTTTTTCCAGAAAGTTGTTaGCTCGAATTATCAATGGGACATCTTGGAAACATC +
Preference number: 4 (lower is better)
Translates to: CQSSYPVFPESC*LELSMGHLGNI
Trigger: GATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAAAAACAGGATACGATGACTGACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CCA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACAGGAAAAACACGTCTATaGTGTACTCCATTTCCGTGT +
Preference number: 4 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTGKTRL*CTPFPC
Trigger: ACACGGAAATGGAGTACACCATAGACGTGTTTTTCC...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR TCA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTCATATACAAAAGCTaGCAGAGCAGTAAGTCCAGT +
Preference number: 4 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEFIYKS*QSSKSS
Trigger: ACTGGACTTACTGCTCTGTCAGCTTTTGTATATGAA...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR GCA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGCTTCGTGTAAGATCATaGAGTACTTTCCTAATTTCA +
Preference number: 4 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWLRVRS*STFLIS
Trigger: TGAAATTAGGAAAGTACTGCATGATCTTACACGAAG...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS GCA 90 bp GCCCGGCTGGCAGGCGCGGAAGGCCGGTGCGGCGTCACCGCCCCATaGTGCCAGCGCGAACTTCCCCGGCACTCCCGGCGGAGCGGCTCT +
Preference number: 5 (lower is better)
Translates to: ARLAGAEGRCGVTAP*CQRELPRHSRRSGS
Trigger: AGAGCCGCTCCGCCGGGAGTGCCGGGGAAGTTCGCGCTGGCAGCATGGGGCGGTGACGCCGCACCGGCCTTCCGCGCCTGCCAGCCGGGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000400081.7
ENST00000554038.5
ENST00000557484.5
CDS GCA 90 bp CGGCTGGCAGGCGCGGAAGGCCGGTGCGGCGTCACCGCCCCATGCTaGCAGCGCGAACTTCCCCGGCACTCCCGGCGGAGCGGCTCTTGC +
Preference number: 5 (lower is better)
Translates to: RLAGAEGRCGVTAPC*QRELPRHSRRSGSC
Trigger: GCAAGAGCCGCTCCGCCGGGAGTGCCGGGGAAGTTCGCGCTGGCAGCATGGGGCGGTGACGCCGCACCGGCCTTCCGCGCCTGCCAGCCG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000400081.7
ENST00000554038.5
ENST00000557484.5
CDS GCA 90 bp CGCCCGAGCGCCACATGTCGTCTCTGGGCTGGAGGATCGGCCCTCTaGAGAGGTGCTCCGGTAGAGGCCGCCAGACGCTCAGCAAATGCG +
Preference number: 5 (lower is better)
Translates to: RPSATCRLWAGGSAL*RGAPVEAARRSANA
Trigger: CGCATTTGCTGAGCGTCTGGCGGCCTCTACCGGAGCACCTCTGCAGAGGGCCGATCCTCCAGCCCAGAGACGACATGTGGCGCTCGGGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS GCA 90 bp CGCCACATGTCGTCTCTGGGCTGGAGGATCGGCCCTCTGCAGAGGTaGTCCGGTAGAGGCCGCCAGACGCTCAGCAAATGCGCCCTTGGC +
Preference number: 5 (lower is better)
Translates to: RHMSSLGWRIGPLQR*SGRGRQTLSKCALG
Trigger: GCCAAGGGCGCATTTGCTGAGCGTCTGGCGGCCTCTACCGGAGCACCTCTGCAGAGGGCCGATCCTCCAGCCCAGAGACGACATGTGGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS CCA 90 bp CTCCAGCTTGTTCTTGAAGCTCGCCCGAGCGCCACATGTCGTCTCTaGGCTGGAGGATCGGCCCTCTGCAGAGGTGCTCCGGTAGAGGCC +
Preference number: 5 (lower is better)
Translates to: LQLVLEARPSATCRL*AGGSALCRGAPVEA
Trigger: GGCCTCTACCGGAGCACCTCTGCAGAGGGCCGATCCTCCAGCCCAGAGACGACATGTGGCGCTCGGGCGAGCTTCAAGAACAAGCTGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS CCA 90 bp TCTCAGTGCCCACCGTCTGCCCCATCAGGTGGTACTGGTTCAGTCTaGAGCCATCTTCCGCCACCACCACCGACTTGGTGGAGCCGTTGG +
Preference number: 5 (lower is better)
Translates to: SQCPPSAPSGGTGSV*SHLPPPPPTWWSRW
Trigger: CCAACGGCTCCACCAAGTCGGTGGTGGTGGCGGAAGATGGCTCCAGACTGAACCAGTACCACCTGATGGGGCAGACGGTGGGCACTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 90 bp GTGCTGGTGCTGATGTTCTCAGTGCCCACCGTCTGCCCCATCAGGTaGTACTGGTTCAGTCTGGAGCCATCTTCCGCCACCACCACCGAC +
Preference number: 5 (lower is better)
Translates to: VLVLMFSVPTVCPIR*YWFSLEPSSATTTD
Trigger: GTCGGTGGTGGTGGCGGAAGATGGCTCCAGACTGAACCAGTACCACCTGATGGGGCAGACGGTGGGCACTGAGAACATCAGCACCAGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 90 bp GTGCTGATGTTCTCAGTGCCCACCGTCTGCCCCATCAGGTGGTACTaGTTCAGTCTGGAGCCATCTTCCGCCACCACCACCGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: VLMFSVPTVCPIRWY*FSLEPSSATTTDLV
Trigger: CACCAAGTCGGTGGTGGTGGCGGAAGATGGCTCCAGACTGAACCAGTACCACCTGATGGGGCAGACGGTGGGCACTGAGAACATCAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGTCAGCAAATGCGCCCTaGGCCGAGCTGGGCGGAGGG +
Preference number: 5 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPSANAP*AELGGG
Trigger: CCCTCCGCCCAGCTCGGCCAAGGGCGCATTTGCTGA...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS-3UTR CAA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGCTGGCAAGGAGGTTGTaGAGAGGGAGGCGCTGCATG +
Preference number: 5 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPLARRL*RGRRCM
Trigger: CATGCAGCGCCTCCCTCTCAACAACCTCCTTGCCAG...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGCCACCACCACCGACTaGGTGGAGCCGTTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYATTTD*VEPLVQ
Trigger: CTGGACCAACGGCTCCACCAAGTCGGTGGTGGTGGC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 90 bp GGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTaGCCGGTTATTTTGGAGAGGCGGCTCCTTTTATCACCGGCTCCC +
Preference number: 5 (lower is better)
Translates to: GTISLEVWLSWSLGV*PVILERRLLLSPAP
Trigger: GGGAGCCGGTGATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTaGAGTTTGGGAGTGTGGCCGGTTATTTTGGAGAGGCGGCTCCTT +
Preference number: 5 (lower is better)
Translates to: ARPLLGTISLEVWLS*SLGVWPVILERRLL
Trigger: AAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGCTTCCAAGGCTTTTTaGCCATCCCAGGCCCAGCCT +
Preference number: 5 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLASKAF*PSQAQP
Trigger: AGGCTGGGCCTGGGATGGCAAAAAAGCCTTGGAAGC...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGGCCACCACCACCGACTaGGTGGAGCCGTTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKATTTD*VEPLVQ
Trigger: CTGGACCAACGGCTCCACCAAGTCGGTGGTGGTGGC...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp AGCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGCTTCCAAGGCTTTTTaGCCATCCCAGGCCCAGCCT +
Preference number: 5 (lower is better)
Translates to: SKTSPWYHFAGSMAVLEFASKAF*PSQAQP
Trigger: AGGCTGGGCCTGGGATGGCAAAAAAGCCTTGGAAGC...AAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGGTGTGGCCGGTTATTTaGGAGAGGCGGCTCCTTTTA +
Preference number: 5 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWVWPVI*ERRLLL
Trigger: TAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACAC...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAAGTATGGCTGTCTaGGAGTTTGGGAGTGTGGCC +
Preference number: 5 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLGSMAV*EFGSVA
Trigger: GGCCACACTCCCAAACTCCAAGACAGCCATACTTCC...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 90 bp CTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTaGGAGTGTGGCCGGTTATTTTGGAGAGGCGGCTCCTTTTATCAC +
Preference number: 5 (lower is better)
Translates to: LSLVPFRWKYGCLGV*ECGRLFWRGGSFYH
Trigger: GTGATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGCTGGCAAGGAGGTTGTaGAGAGGGAGGCGCTGCATG +
Preference number: 5 (lower is better)
Translates to: STYDTGHLSVSHRILFFQLARRL*RGRRCM
Trigger: CATGCAGCGCCTCCCTCTCAACAACCTCCTTGCCAG...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp AGCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGAAGTATGGCTGTCTaGGAGTTTGGGAGTGTGGCC +
Preference number: 5 (lower is better)
Translates to: SKTSPWYHFAGSMAVLEFGSMAV*EFGSVA
Trigger: GGCCACACTCCCAAACTCCAAGACAGCCATACTTCC...AAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 90 bp TGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGGTTATTTTaGAGAGGCGGCTCCTTTTATCACCGGCTCCCTATTCAAATACGT +
Preference number: 5 (lower is better)
Translates to: WKYGCLGVWECGRLF*RGGSFYHRLPIQIR
Trigger: ACGTATTTGAATAGGGAGCCGGTGATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGCTTCCCTTCTCCAGCTaGTTCTTGAAGCTTTCTGAA +
Preference number: 5 (lower is better)
Translates to: LGTISLEVWLSWSLGVWPLPFSS*FLKLSE
Trigger: TTCAGAAAGCTTCAAGAACAAGCTGGAGAAGGGAAG...CGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACATGGACTTCTTCCCGTaGTGGAAGAACGTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYMDFFP*WKNVSG
Trigger: CCCAGACACGTTCTTCCACAACGGGAAGAAGTCCAT...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACGAGCAAGACCTCTCCTaGGTACCATTTCGCTGGAAG +
Preference number: 5 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYEQDLS*VPFRWK
Trigger: CTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCTC...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAAATGGACTTCTTCCCGTaGTGGAAGAACGTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKMDFFP*WKNVSG
Trigger: CCCAGACACGTTCTTCCACAACGGGAAGAAGTCCAT...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTGCCACCACCACCGACTaGGTGGAGCCGTTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPATTTD*VEPLVQ
Trigger: CTGGACCAACGGCTCCACCAAGTCGGTGGTGGTGGC...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp ACTCAATTACAATTTCTCACCACTGAAGCACTACACGCTGGCTGTAGGGAGAGGTTACTGAGACTGAGGTaGTATTCGACGTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: TQLQFLTTEALHAGCRERLLRLR*YSTSLL
Trigger: CAGCAGGGACGTCGAATACAACCTCAGTCTCAGTAA...CCTCTCCCTACAGCCAGCGTGTAGTGCTTCAGTGGTGAGAAATTGTAATTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp AAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGACCTCTCCTTGGTACTTACTGAGACTGAGGTaGTATTCGACGTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: KDSAHIWRVPVSKTSPWYLLRLR*YSTSLL
Trigger: CAGCAGGGACGTCGAATACAACCTCAGTCTCAGTAA...GTACCAAGGAGAGGTCTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CAGTGTTTCAGAGACAGCGATCACATGGGCCAAGTGCTGAGAATGTCATCAAAATGGCTGTCTTGGAGTTaGGGAGTGTGGCCGGTTATT +
Preference number: 5 (lower is better)
Translates to: QCFRDSDHMGQVLRMSSKWLSWS*GVWPVI
Trigger: AATAACCGGCCACACTCCCAAACTCCAAGACAGCCA...TTTTGATGACATTCTCAGCACTTGGCCCATGTGATCGCTGTCTCTGAAACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGTCTGGGGTCCAGATCTaGCTGGCAAGGAGGTTGTTG +
Preference number: 5 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKSGVQI*LARRLL
Trigger: CAACAACCTCCTTGCCAGCAAGATCTGGACCCCAGA...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGATGGACTTCTTCCCGTaGTGGAAGAACGTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: STYDTGHLSVSHRILFFQMDFFP*WKNVSG
Trigger: CCCAGACACGTTCTTCCACAACGGGAAGAAGTCCAT...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGACTTCACGCTTTTTCTaGATCTTGGCTGCTTCCAAG +
Preference number: 5 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLTSRFF*ILAASK
Trigger: CTTGGAAGCAGCCAAGATCAAGAAAAAGCGTGAAGT...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGGAGCAAGACCTCTCCTaGGTACCATTTCGCTGGAAG +
Preference number: 5 (lower is better)
Translates to: STYDTGHLSVSHRILFFQEQDLS*VPFRWK
Trigger: CTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCTC...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TCAACGTATGATACTGGGCATCTGAGTGTCAGTCATCGTATCCTGTTTTTCCAGTTACTGAGACTGAGGTaGTATTCGACGTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: STYDTGHLSVSHRILFFQLLRLR*YSTSLL
Trigger: CAGCAGGGACGTCGAATACAACCTCAGTCTCAGTAA...CTGGAAAAACAGGATACGATGACTGACACTCAGATGCCCAGTATCATACGTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGGTGTGGCCGGTTATTTaGGAGAGGCGGCTCCTTTTA +
Preference number: 5 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKVWPVI*ERRLLL
Trigger: TAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACAC...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGGTAAATATCGTGATGTaGTCATTGGTCTCATCTTTC +
Preference number: 5 (lower is better)
Translates to: LLGTISLEVWLSWSLGVWVNIVM*SLVSSF
Trigger: GAAAGATGAGACCAATGACAACATCACGATATTTAC...CCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACACTGGCAAGGAGGTTGTaGAGAGGGAGGCGCTGCATG +
Preference number: 5 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTLARRL*RGRRCM
Trigger: CATGCAGCGCCTCCCTCTCAACAACCTCCTTGCCAG...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAATTCTCCAGCTTGTTCTaGAAGCTCGCCCGAGCGCCA +
Preference number: 5 (lower is better)
Translates to: FQKVVCSNYQWDILETSEFSSLF*KLARAP
Trigger: TGGCGCTCGGGCGAGCTTCAAGAACAAGCTGGAGAA...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS-3UTR CAA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGTTCTCCAGCTTGTTCTaGAAGCTTTCTGAAATATCT +
Preference number: 5 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLFSSLF*KLSEIS
Trigger: AGATATTTCAGAAAGCTTCAAGAACAAGCTGGAGAA...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGGTAAATATCGTGATGTaGTCATTGGTCTCATCTTTC +
Preference number: 5 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLVNIVM*SLVSSF
Trigger: GAAAGATGAGACCAATGACAACATCACGATATTTAC...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGGCTTCCAAGGCTTTTTaGCCATCCCAGGCCCAGCCT +
Preference number: 5 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEASKAF*PSQAQP
Trigger: AGGCTGGGCCTGGGATGGCAAAAAAGCCTTGGAAGC...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTGGCTGTCTTGGAGTTaGGGAGTGTGGCCGGTTATT +
Preference number: 5 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWWLSWS*GVWPVI
Trigger: AATAACCGGCCACACTCCCAAACTCCAAGACAGCCA...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTGTTTCCAGAAAGTTGTTaGCTCGAATTATCAATGGGA +
Preference number: 5 (lower is better)
Translates to: ARPLLGTISLEVWLSWSLFPESC*LELSMG
Trigger: TCCCATTGATAATTCGAGCAAACAACTTTCTGGAAA...CAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGCTTTCACTGAACTGGTaGGCATCTGTGAAAAGCCAA +
Preference number: 5 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKLSLNW*ASVKSQ
Trigger: TTGGCTTTTCACAGATGCCAACCAGTTCAGTGAAAG...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATTCTGGGGTCCAGATCTaGCTGGCAAGGAGGTTGTTG +
Preference number: 5 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHSGVQI*LARRLL
Trigger: CAACAACCTCCTTGCCAGCAAGATCTGGACCCCAGA...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTCTGGGGTCCAGATCTaGCTGGCAAGGAGGTTGTTG +
Preference number: 5 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGESGVQI*LARRLL
Trigger: CAACAACCTCCTTGCCAGCAAGATCTGGACCCCAGA...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGGGAAGTATGGCTGTCTaGGAGTTTGGGAGTGTGGCC +
Preference number: 5 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEGSMAV*EFGSVA
Trigger: GGCCACACTCCCAAACTCCAAGACAGCCATACTTCC...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGCTTCCCTTCTCCAGCTaGTTCTTGAAGCTCGCCCGA +
Preference number: 5 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGELPFSS*FLKLAR
Trigger: TCGGGCGAGCTTCAAGAACAAGCTGGAGAAGGGAAG...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS-3UTR CAA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGGTGTGGCCGGTTATTTaGGAGAGGCGGCTCCTTTTA +
Preference number: 5 (lower is better)
Translates to: LFMISVSRNIVGQLIIMEVWPVI*ERRLLL
Trigger: TAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACAC...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTGGCTGTCTTGGAGTTaGGGAGTGTGGCCGGTTATT +
Preference number: 5 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEWLSWS*GVWPVI
Trigger: AATAACCGGCCACACTCCCAAACTCCAAGACAGCCA...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp ATGTCCAAGTTTCCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGACTTCACGCTTTTTCTaGATCTTGGCTGCTTCCAAG +
Preference number: 5 (lower is better)
Translates to: MSKFPHNGKRALYDLCFSTSRFF*ILAASK
Trigger: CTTGGAAGCAGCCAAGATCAAGAAAAAGCGTGAAGT...CGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGGAAACTTGGACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGACTTCACGCTTTTTCTaGATCTTGGCTGCTTCCAAG +
Preference number: 5 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWTSRFF*ILAASK
Trigger: CTTGGAAGCAGCCAAGATCAAGAAAAAGCGTGAAGT...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp GATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGTTTCCTCTTTCACTGAACTGGTaGGCATCTGTGAAAAGCCAA +
Preference number: 5 (lower is better)
Translates to: DLCFSQYSWSTNNHGEFPLSLNW*ASVKSQ
Trigger: TTGGCTTTTCACAGATGCCAACCAGTTCAGTGAAAG...AGGAAACTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TGCAAAAATTTCCTGAAAGATAGTGCTCACATATGGAGAGTCCCTGTGAGCAAGTTTCCAGAAAGTTGTTaGCTCGAATTATCAATGGGA +
Preference number: 5 (lower is better)
Translates to: CKNFLKDSAHIWRVPVSKFPESC*LELSMG
Trigger: TCCCATTGATAATTCGAGCAAACAACTTTCTGGAAA...CTTGCTCACAGGGACTCTCCATATGTGAGCACTATCTTTCAGGAAATTTTTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp GCCTATTCTATTTCTTCGTGTAAGATCATGCAGTACTTTCCTAATTTCAGAACACTTCCCTTCTCCAGCTaGTTCTTGAAGCTTTCTGAA +
Preference number: 5 (lower is better)
Translates to: AYSISSCKIMQYFPNFRTLPFSS*FLKLSE
Trigger: TTCAGAAAGCTTCAAGAACAAGCTGGAGAAGGGAAG...TGTTCTGAAATTAGGAAAGTACTGCATGATCTTACACGAAGAAATAGAATAGGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp ATGTCCAAGTTTCCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGATCGTGATGTTGTCATaGGTCTCATCTTTCACTGAA +
Preference number: 5 (lower is better)
Translates to: MSKFPHNGKRALYDLCFSIVMLS*VSSFTE
Trigger: TTCAGTGAAAGATGAGACCAATGACAACATCACGAT...CGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGGAAACTTGGACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTTCTCCAGCTTGTTCTaGAAGCTTTCTGAAATATCT +
Preference number: 5 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWFSSLF*KLSEIS
Trigger: AGATATTTCAGAAAGCTTCAAGAACAAGCTGGAGAA...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp CCTCATAATGGAAAACGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGAAGAGAAGGAGGTTTTaGATCATGATAAAACCAGAG +
Preference number: 5 (lower is better)
Translates to: PHNGKRALYDLCFSQYSWKRRRF*IMIKPE
Trigger: CTCTGGTTTTATCATGATCAAAAACCTCCTTCTCTT...CCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACGTTTTCCATTATGAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGAGATCGTGATGTTGTCATaGGTCTCATCTTTCACTGAA +
Preference number: 5 (lower is better)
Translates to: LYDLCFSQYSWSTNNHGEIVMLS*VSSFTE
Trigger: TTCAGTGAAAGATGAGACCAATGACAACATCACGAT...CTCTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATATCGTGATGTTGTCATaGGTCTCATCTTTCACTGAA +
Preference number: 5 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHIVMLS*VSSFTE
Trigger: TTCAGTGAAAGATGAGACCAATGACAACATCACGAT...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAATTTCCAGAAAGTTGTTaGCTCGAATTATCAATGGGA +
Preference number: 5 (lower is better)
Translates to: FQKVVCSNYQWDILETSEFPESC*LELSMG
Trigger: TCCCATTGATAATTCGAGCAAACAACTTTCTGGAAA...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp TTCCAGAAAGTTGTTTGCTCGAATTATCAATGGGACATCTTGGAAACATCTGAATGCCTGCATAAAAGTTaGCCTATTCTATTTCTTCGT +
Preference number: 5 (lower is better)
Translates to: FQKVVCSNYQWDILETSECLHKS*PILFLR
Trigger: ACGAAGAAATAGAATAGGCAAACTTTTATGCAGGCA...TTCAGATGTTTCCAAGATGTCCCATTGATAATTCGAGCAAACAACTTTCTGGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS-3UTR CAA 90 bp CGTGCTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGTAAATATCGTGATGTaGTCATTGGTCTCATCTTTC +
Preference number: 5 (lower is better)
Translates to: RALYDLCFSQYSWSTNNHVNIVM*SLVSSF
Trigger: GAAAGATGAGACCAATGACAACATCACGATATTTAC...ATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAGCACG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS-3UTR CAA 90 bp CTCTTTATGATCTCTGTTTCTCGCAATATAGTTGGTCAACTAATAATCATGGAGTGCCTGCATAAAAGTTaGCCTATTCTATTTCTTCGT +
Preference number: 5 (lower is better)
Translates to: LFMISVSRNIVGQLIIMECLHKS*PILFLR
Trigger: ACGAAGAAATAGAATAGGCAAACTTTTATGCAGGCA...CTCCATGATTATTAGTTGACCAACTATATTGCGAGAAACAGAGATCATAAAGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335625.10
ENST00000400081.7
CDS GCA 72 bp GGCGCGGAAGGCCGGTGCGGCGTCACCGCCCCATGCTaGCAGCGCGAACTTCCCCGGCACTCCCGGCGGAGC +
Preference number: 6 (lower is better)
Translates to: GAEGRCGVTAPC*QRELPRHSRRS
Trigger: GCTCCGCCGGGAGTGCCGGGGAAGTTCGCGCTGGCAGCATGGGGCGGTGACGCCGCACCGGCCTTCCGCGCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000400081.7
ENST00000554038.5
ENST00000557484.5
CDS GCA 72 bp GCAGGCGCGGAAGGCCGGTGCGGCGTCACCGCCCCATaGTGCCAGCGCGAACTTCCCCGGCACTCCCGGCGG +
Preference number: 6 (lower is better)
Translates to: AGAEGRCGVTAP*CQRELPRHSRR
Trigger: CCGCCGGGAGTGCCGGGGAAGTTCGCGCTGGCAGCATGGGGCGGTGACGCCGCACCGGCCTTCCGCGCCTGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000400081.7
ENST00000554038.5
ENST00000557484.5
CDS GCA 72 bp GCCACATGTCGTCTCTGGGCTGGAGGATCGGCCCTCTaGAGAGGTGCTCCGGTAGAGGCCGCCAGACGCTCA +
Preference number: 6 (lower is better)
Translates to: ATCRLWAGGSAL*RGAPVEAARRS
Trigger: TGAGCGTCTGGCGGCCTCTACCGGAGCACCTCTGCAGAGGGCCGATCCTCCAGCCCAGAGACGACATGTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS GCA 72 bp TCGTCTCTGGGCTGGAGGATCGGCCCTCTGCAGAGGTaGTCCGGTAGAGGCCGCCAGACGCTCAGCAAATGC +
Preference number: 6 (lower is better)
Translates to: SSLGWRIGPLQR*SGRGRQTLSKC
Trigger: GCATTTGCTGAGCGTCTGGCGGCCTCTACCGGAGCACCTCTGCAGAGGGCCGATCCTCCAGCCCAGAGACGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS CCA 72 bp GTTCTTGAAGCTCGCCCGAGCGCCACATGTCGTCTCTaGGCTGGAGGATCGGCCCTCTGCAGAGGTGCTCCG +
Preference number: 6 (lower is better)
Translates to: VLEARPSATCRL*AGGSALCRGAP
Trigger: CGGAGCACCTCTGCAGAGGGCCGATCCTCCAGCCCAGAGACGACATGTGGCGCTCGGGCGAGCTTCAAGAAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355395.9
CDS CCA 72 bp CCACCGTCTGCCCCATCAGGTGGTACTGGTTCAGTCTaGAGCCATCTTCCGCCACCACCACCGACTTGGTGG +
Preference number: 6 (lower is better)
Translates to: PPSAPSGGTGSV*SHLPPPPPTWW
Trigger: CCACCAAGTCGGTGGTGGTGGCGGAAGATGGCTCCAGACTGAACCAGTACCACCTGATGGGGCAGACGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 72 bp TTCTCAGTGCCCACCGTCTGCCCCATCAGGTGGTACTaGTTCAGTCTGGAGCCATCTTCCGCCACCACCACC +
Preference number: 6 (lower is better)
Translates to: FSVPTVCPIRWY*FSLEPSSATTT
Trigger: GGTGGTGGTGGCGGAAGATGGCTCCAGACTGAACCAGTACCACCTGATGGGGCAGACGGTGGGCACTGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 72 bp CTGATGTTCTCAGTGCCCACCGTCTGCCCCATCAGGTaGTACTGGTTCAGTCTGGAGCCATCTTCCGCCACC +
Preference number: 6 (lower is better)
Translates to: LMFSVPTVCPIR*YWFSLEPSSAT
Trigger: GGTGGCGGAAGATGGCTCCAGACTGAACCAGTACCACCTGATGGGGCAGACGGTGGGCACTGAGAACATCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 72 bp TCAGTCTGGAGCCATCTTCCGCCACCACCACCGACTTaGTGGAGCCGTTGGTCCAGACGTAAACGACTTCAG +
Preference number: 6 (lower is better)
Translates to: SVWSHLPPPPPT*WSRWSRRKRLQ
Trigger: CTGAAGTCGTTTACGTCTGGACCAACGGCTCCACCAAGTCGGTGGTGGTGGCGGAAGATGGCTCCAGACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS GCA 72 bp ATCCATCGGGAAGTCCTCAAGCTGCATGGGGCACTCTaGAGAGATGGTCAAGCGCATGGTGTAGAGCAGGGT +
Preference number: 6 (lower is better)
Translates to: IHREVLKLHGAL*RDGQAHGVEQG
Trigger: ACCCTGCTCTACACCATGCGCTTGACCATCTCTGCAGAGTGCCCCATGCAGCTTGAGGACTTCCCGATGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
ENST00000555182.5
CDS CCA 72 bp GTCTGGAGCCATCTTCCGCCACCACCACCGACTTGGTaGAGCCGTTGGTCCAGACGTAAACGACTTCAGAAT +
Preference number: 6 (lower is better)
Translates to: VWSHLPPPPPTW*SRWSRRKRLQN
Trigger: ATTCTGAAGTCGTTTACGTCTGGACCAACGGCTCCACCAAGTCGGTGGTGGTGGCGGAAGATGGCTCCAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS GCA 72 bp ATCTTGCTGGCAAGGAGGTTGTTGAGAGGGAGGCGCTaGATGGGCCCCTTAAACCGAAGCCTTTCATCTTTC +
Preference number: 6 (lower is better)
Translates to: ILLARRLLRGRR*MGPLNRSLSSF
Trigger: GAAAGATGAAAGGCTTCGGTTTAAGGGGCCCATGCAGCGCCTCCCTCTCAACAACCTCCTTGCCAGCAAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
ENST00000554596.5
ENST00000554599.5
ENST00000555182.5
CDS CCA 72 bp GGCTGTCTTGGAGTTTGGGAGTGTGGCCGGTTATTTTaGAGAGGCGGCTCCTTTTATCACCGGCTCCCTATT +
Preference number: 6 (lower is better)
Translates to: GCLGVWECGRLF*RGGSFYHRLPI
Trigger: AATAGGGAGCCGGTGATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 72 bp GTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTTaGGAGTGTGGCCGGTTATTTTGGAGAGGCGGCTCC +
Preference number: 6 (lower is better)
Translates to: VPFRWKYGCLGV*ECGRLFWRGGS
Trigger: GGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 72 bp TGGCTGTCTTGGAGTTTGGGAGTGTGGCCGGTTATTTaGGAGAGGCGGCTCCTTTTATCACCGGCTCCCTAT +
Preference number: 6 (lower is better)
Translates to: WLSWSLGVWPVI*ERRLLLSPAPY
Trigger: ATAGGGAGCCGGTGATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 72 bp GGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTaGGGAGTGTGGCCGGTTATTTTGGAGAGGCGGCTC +
Preference number: 6 (lower is better)
Translates to: GTISLEVWLSWS*GVWPVILERRL
Trigger: GAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 90 bp AGCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTaGGAGTTTGGGAGTGTGGCCGGTTATTTTGGAGAGGCGGCTCCT +
Preference number: 6 (lower is better)
Translates to: SKTSPWYHFAGSMAV*EFGSVAGYFGEAAP
Trigger: AGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 90 bp CTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTGGCCGGTTATTTaGGAGAGGCGGCTCCTTTTATCACCGGCTCCCTATTCAAATACG +
Preference number: 6 (lower is better)
Translates to: LEVWLSWSLGVWPVI*ERRLLLSPAPYSNT
Trigger: CGTATTTGAATAGGGAGCCGGTGATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 90 bp CCTCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTGGAGTTaGGGAGTGTGGCCGGTTATTTTGGAGAGGCGGCTCCTTTTATCA +
Preference number: 6 (lower is better)
Translates to: PLLGTISLEVWLSWS*GVWPVILERRLLLS
Trigger: TGATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 72 bp TCGCTGGAAGTATGGCTGTCTTGGAGTTTGGGAGTGTaGCCGGTTATTTTGGAGAGGCGGCTCCTTTTATCA +
Preference number: 6 (lower is better)
Translates to: SLEVWLSWSLGV*PVILERRLLLS
Trigger: TGATAAAAGGAGCCGCCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 72 bp CTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTTaGAGTTTGGGAGTGTGGCCGGTTATTTTGGAGAGG +
Preference number: 6 (lower is better)
Translates to: LLGTISLEVWLS*SLGVWPVILER
Trigger: CCTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CCA 72 bp GCAAGACCTCTCCTTGGTACCATTTCGCTGGAAGTATaGCTGTCTTGGAGTTTGGGAGTGTGGCCGGTTATT +
Preference number: 6 (lower is better)
Translates to: ARPLLGTISLEV*LSWSLGVWPVI
Trigger: AATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGAGGTCTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 90 bp CTGAGACGAGGATCTGAGAACACAGCTCCCATAGTGCCTAGGGGATaGTTTGGCCTTGATACACCTCAGTTCTCCAACATCCAAGGATAC +
Preference number: 6 (lower is better)
Translates to: LRRGSENTAPIVPRG*FGLDTPQFSNIQGY
Trigger: GTATCCTTGGATGTTGGAGAACTGAGGTGTATCAAGGCCAAACAATCCCCTAGGCACTATGGGAGCTGTGTTCTCAGATCCTCGTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554083.1
CDS CAA 72 bp AAGTCTTCTCTTCAGAGGGTTTTACTGAGACTGAGGTaGTATTCGACGTCCCTGCTGGGGTCTGTTCCTTCG +
Preference number: 6 (lower is better)
Translates to: KSSLQRVLLRLR*YSTSLLGSVPS
Trigger: CGAAGGAACAGACCCCAGCAGGGACGTCGAATACAACCTCAGTCTCAGTAAAACCCTCTGAAGAGAAGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 72 bp TCTCCTTGGTACCATTTCGCTGGAAGTATGGCTGTCTaGGAGTTTGGGAGTGTGGCCGGTTATTTTGGAGAG +
Preference number: 6 (lower is better)
Translates to: SPWYHFAGSMAV*EFGSVAGYFGE
Trigger: CTCTCCAAAATAACCGGCCACACTCCCAAACTCCAAGACAGCCATACTTCCAGCGAAATGGTACCAAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 72 bp TACACCTCAGTTCTCCAACATCCAAGGATACTCTGCTaGGGGCTAGTTATCCAACCACCTAACCTGAGGCTC +
Preference number: 6 (lower is better)
Translates to: YTSVLQHPRILC*GLVIQPPNLRL
Trigger: GAGCCTCAGGTTAGGTGGTTGGATAACTAGCCCCAAGCAGAGTATCCTTGGATGTTGGAGAACTGAGGTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554083.1
CDS CAA 72 bp GGATCTGAGAACACAGCTCCCATAGTGCCTAGGGGATaGTTTGGCCTTGATACACCTCAGTTCTCCAACATC +
Preference number: 6 (lower is better)
Translates to: GSENTAPIVPRG*FGLDTPQFSNI
Trigger: GATGTTGGAGAACTGAGGTGTATCAAGGCCAAACAATCCCCTAGGCACTATGGGAGCTGTGTTCTCAGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554083.1
CDS CAA 90 bp TGCTTTCAGAAGTCTTCTCTTCAGAGGGTTTTACTGAGACTGAGGTaGTATTCGACGTCCCTGCTGGGGTCTGTTCCTTCGGAATGTTTG +
Preference number: 6 (lower is better)
Translates to: CFQKSSLQRVLLRLR*YSTSLLGSVPSECL
Trigger: CAAACATTCCGAAGGAACAGACCCCAGCAGGGACGTCGAATACAACCTCAGTCTCAGTAAAACCCTCTGAAGAGAAGACTTCTGAAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
CDS CAA 72 bp AAGAGCCCATCCAAGATCCTGGTAAATATCGTGATGTaGTCATTGGTCTCATCTTTCACTGAACTGGTTGGC +
Preference number: 6 (lower is better)
Translates to: KSPSKILVNIVM*SLVSSFTELVG
Trigger: GCCAACCAGTTCAGTGAAAGATGAGACCAATGACAACATCACGATATTTACCAGGATCTTGGATGGGCTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENST00000335625.10
ENST00000355395.9
ENST00000400081.7
ENST00000554038.5
ENST00000554083.1
ENST00000554596.5
ENST00000554599.5
ENST00000555182.5
ENST00000557449.5