RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GABPB1-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000285410

Ensembl transcript IDs: ENST00000615671.2

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGCGGCGGCCGCCACCATGTCTGCCCGCCCCTCCCAGAAGCAGTGTaGCCAGCGGACAAAGCGCAGCGGCGGCGCGGGCGCCCAGGCCGA +
Preference number: 5 (lower is better)
Translates to: GGGRHHVCPPLPEAV*PADKAQRRRGRPGR
Trigger: TCGGCCTGGGCGCCCGCGCCGCCGCTGCGCTTTGTCCGCTGGGCACACTGCTTCTGGGAGGGGCGGGCAGACATGGTGGCGGCCGCCGCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 90 bp CGCCGCCCGTTCCCCTCTCCGGAGAGCCCGGCGGGGCCGTCAGGCTaGCGAGACAAAGGGTACCGCGGCGCCAGAGGCCGAGGCCCAGCC +
Preference number: 5 (lower is better)
Translates to: RRPFPSPESPAGPSG*RDKGYRGARGRGPA
Trigger: GGCTGGGCCTCGGCCTCTGGCGCCGCGGTACCCTTTGTCTCGGCAGCCTGACGGCCCCGCCGGGCTCTCCGGAGAGGGGAACGGGCGGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 90 bp AGGCCGAGGCCCAGCCGCGCCTGCCTTCCTCTTTCTCCCGCCCACTaGCAACCTCCAGTCGCCCGCAGAACCTCCGCTGCCTCGGCGCGA +
Preference number: 5 (lower is better)
Translates to: RPRPSRACLPLSPAH*QPPVARRTSAASAR
Trigger: TCGCGCCGAGGCAGCGGAGGTTCTGCGGGCGACTGGAGGTTGGCAGTGGGCGGGAGAAAGAGGAAGGCAGGCGCGGCTGGGCCTCGGCCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 90 bp AGACAAAGGGTACCGCGGCGCCAGAGGCCGAGGCCCAGCCGCGCCTaGCTTCCTCTTTCTCCCGCCCACTGCCAACCTCCAGTCGCCCGC +
Preference number: 5 (lower is better)
Translates to: RQRVPRRQRPRPSRA*LPLSPAHCQPPVAR
Trigger: GCGGGCGACTGGAGGTTGGCAGTGGGCGGGAGAAAGAGGAAGGCAGGCGCGGCTGGGCCTCGGCCTCTGGCGCCGCGGTACCCTTTGTCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 90 bp TCTTCCCTGAGGCAGTGCACCCGCAGTTCTCGGCGGCGAAGTCTTTaGGGCAGAAGTCCCGAGCCTTCAGAACGGCAGGCTTCTCCCCCT +
Preference number: 5 (lower is better)
Translates to: SSLRQCTRSSRRRSL*GRSPEPSERQASPP
Trigger: AGGGGGAGAAGCCTGCCGTTCTGAAGGCTCGGGACTTCTGCCCCAAAGACTTCGCCGCCGAGAACTGCGGGTGCACTGCCTCAGGGAAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS TCA 90 bp TGTGCCCTGGCAGAGATGACCTGGCAAAATTCTCAACTTCTTCCCTaGGGCAGTGCACCCGCAGTTCTCGGCGGCGAAGTCTTTGGGGCA +
Preference number: 5 (lower is better)
Translates to: CALAEMTWQNSQLLP*GSAPAVLGGEVFGA
Trigger: TGCCCCAAAGACTTCGCCGCCGAGAACTGCGGGTGCACTGCCTCAGGGAAGAAGTTGAGAATTTTGCCAGGTCATCTCTGCCAGGGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 90 bp GGCAGAGATGACCTGGCAAAATTCTCAACTTCTTCCCTGAGGCAGTaGACCCGCAGTTCTCGGCGGCGAAGTCTTTGGGGCAGAAGTCCC +
Preference number: 5 (lower is better)
Translates to: GRDDLAKFSTSSLRQ*TRSSRRRSLWGRSP
Trigger: GGGACTTCTGCCCCAAAGACTTCGCCGCCGAGAACTGCGGGTGCACTGCCTCAGGGAAGAAGTTGAGAATTTTGCCAGGTCATCTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 90 bp GCCTGGGTAACAGAGAAAGCAAGACCCTGTCAAAGAAAGAAGAGGTaGAAAGGGGAAAACAGGGAGGGAAGGAGAGAGAGGGAGAGGGAC +
Preference number: 5 (lower is better)
Translates to: AWVTEKARPCQRKKR*KGENREGRRERERD
Trigger: GTCCCTCTCCCTCTCTCTCCTTCCCTCCCTGTTTTCCCCTTTGCACCTCTTCTTTCTTTGACAGGGTCTTGCTTTCTCTGTTACCCAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS TCA 90 bp AGGGAGGGAGGGAGACAGAAAGGTGCACTAGCCCACCAACTGAACTaGCAGCTGATTGCACCAAAGCATCTTCTTTGTATAGAGCACTGT +
Preference number: 5 (lower is better)
Translates to: REGGRQKGALAHQLN*QLIAPKHLLCIEHC
Trigger: ACAGTGCTCTATACAAAGAAGATGCTTTGGTGCAATCAGCTGTCAGTTCAGTTGGTGGGCTAGTGCACCTTTCTGTCTCCCTCCCTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 90 bp ACACAAAGCAGGCCTGTATCATTCCTTTGGTTTCAGTTTTCACGATaGACCCTTGAGGCTAGGCACGCTGATTCAACACACTTGGAGAGC +
Preference number: 5 (lower is better)
Translates to: TQSRPVSFLWFQFSR*TLEARHADSTHLES
Trigger: GCTCTCCAAGTGTGTTGAATCAGCGTGCCTAGCCTCAAGGGTGCATCGTGAAAACTGAAACCAAAGGAATGATACAGGCCTGCTTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 90 bp TTTCACGATGCACCCTTGAGGCTAGGCACGCTGATTCAACACACTTaGAGAGCTTCACCGAAACACACTAAACACACAGTGATGAACTGT +
Preference number: 5 (lower is better)
Translates to: FHDAPLRLGTLIQHT*RASPKHTKHTVMNC
Trigger: ACAGTTCATCACTGTGTGTTTAGTGTGTTTCGGTGAAGCTCTCCAAGTGTGTTGAATCAGCGTGCCTAGCCTCAAGGGTGCATCGTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 90 bp CTTAAAGTGGGAAGACACACACAAAGCAGGCCTGTATCATTCCTTTaGTTTCAGTTTTCACGATGCACCCTTGAGGCTAGGCACGCTGAT +
Preference number: 5 (lower is better)
Translates to: LKVGRHTQSRPVSFL*FQFSRCTLEARHAD
Trigger: ATCAGCGTGCCTAGCCTCAAGGGTGCATCGTGAAAACTGAAACCAAAGGAATGATACAGGCCTGCTTTGTGTGTGTCTTCCCACTTTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS TCA 90 bp AAACTTCCACCCACTGACCCTAGTTCCTTCTGGTCAAGTCAAATCTaGTCCTTCTGCATGACAGAACTCCAAATCCTTAAAAGTGGCTGT +
Preference number: 5 (lower is better)
Translates to: KLPPTDPSSFWSSQI*SFCMTELQILKSGC
Trigger: ACAGCCACTTTTAAGGATTTGGAGTTCTGTCATGCAGAAGGATCAGATTTGACTTGACCAGAAGGAACTAGGGTCAGTGGGTGGAAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 90 bp CCATCAGTGAGTTCATCTGAACTCAGGCTACTTGCAAACAGAGACTaGGTAACTGCCTCGTGCACCCTCAAAAATAAATTCATGATGCAA +
Preference number: 5 (lower is better)
Translates to: PSVSSSELRLLANRD*VTASCTLKNKFMMQ
Trigger: TTGCATCATGAATTTATTTTTGAGGGTGCACGAGGCAGTTACCCAGTCTCTGTTTGCAAGTAGCCTGAGTTCAGATGAACTCACTGATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS TCA 90 bp AGTGGAGTGTTCCAGAGGTTACATGGTGTGCTAACCACAACAGTCTaGCGTAGATCTGAGAATCTTCTATTAAACCAGGCATTAAAAAGA +
Preference number: 5 (lower is better)
Translates to: SGVFQRLHGVLTTTV*RRSENLLLNQALKR
Trigger: TCTTTTTAATGCCTGGTTTAATAGAAGATTCTCAGATCTACGTCAGACTGTTGTGGTTAGCACACCATGTAACCTCTGGAACACTCCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 72 bp CGCCACCATGTCTGCCCGCCCCTCCCAGAAGCAGTGTaGCCAGCGGACAAAGCGCAGCGGCGGCGCGGGCGC +
Preference number: 6 (lower is better)
Translates to: RHHVCPPLPEAV*PADKAQRRRGR
Trigger: GCGCCCGCGCCGCCGCTGCGCTTTGTCCGCTGGGCACACTGCTTCTGGGAGGGGCGGGCAGACATGGTGGCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 72 bp TTCCCCTCTCCGGAGAGCCCGGCGGGGCCGTCAGGCTaGCGAGACAAAGGGTACCGCGGCGCCAGAGGCCGA +
Preference number: 6 (lower is better)
Translates to: FPSPESPAGPSG*RDKGYRGARGR
Trigger: TCGGCCTCTGGCGCCGCGGTACCCTTTGTCTCGGCAGCCTGACGGCCCCGCCGGGCTCTCCGGAGAGGGGAA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 72 bp GGCCAAGGCTGTCGCTGCGGGGGCCCCGCGCGGGACTaGCCAGGCTCTTCCATTAACCCTGTCTGGTCCGGC +
Preference number: 6 (lower is better)
Translates to: GQGCRCGGPARD*PGSSINPVWSG
Trigger: GCCGGACCAGACAGGGTTAATGGAAGAGCCTGGCCAGTCCCGCGCGGGGCCCCCGCAGCGACAGCCTTGGCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 72 bp CCCAGCCGCGCCTGCCTTCCTCTTTCTCCCGCCCACTaGCAACCTCCAGTCGCCCGCAGAACCTCCGCTGCC +
Preference number: 6 (lower is better)
Translates to: PSRACLPLSPAH*QPPVARRTSAA
Trigger: GGCAGCGGAGGTTCTGCGGGCGACTGGAGGTTGGCAGTGGGCGGGAGAAAGAGGAAGGCAGGCGCGGCTGGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 72 bp GCGCGGGACTGGCCAGGCTCTTCCATTAACCCTGTCTaGTCCGGCCGATCCCGCCGCGACCCGAGCGCCTCT +
Preference number: 6 (lower is better)
Translates to: ARDWPGSSINPV*SGRSRRDPSAS
Trigger: AGAGGCGCTCGGGTCGCGGCGGGATCGGCCGGACCAGACAGGGTTAATGGAAGAGCCTGGCCAGTCCCGCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 72 bp GAGGCAGTGCACCCGCAGTTCTCGGCGGCGAAGTCTTaGGGGCAGAAGTCCCGAGCCTTCAGAACGGCAGGC +
Preference number: 6 (lower is better)
Translates to: EAVHPQFSAAKS*GQKSRAFRTAG
Trigger: GCCTGCCGTTCTGAAGGCTCGGGACTTCTGCCCCAAAGACTTCGCCGCCGAGAACTGCGGGTGCACTGCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 72 bp AGGCAGTGCACCCGCAGTTCTCGGCGGCGAAGTCTTTaGGGCAGAAGTCCCGAGCCTTCAGAACGGCAGGCT +
Preference number: 6 (lower is better)
Translates to: RQCTRSSRRRSL*GRSPEPSERQA
Trigger: AGCCTGCCGTTCTGAAGGCTCGGGACTTCTGCCCCAAAGACTTCGCCGCCGAGAACTGCGGGTGCACTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 90 bp TTCTTCCCTGAGGCAGTGCACCCGCAGTTCTCGGCGGCGAAGTCTTaGGGGCAGAAGTCCCGAGCCTTCAGAACGGCAGGCTTCTCCCCC +
Preference number: 6 (lower is better)
Translates to: FFPEAVHPQFSAAKS*GQKSRAFRTAGFSP
Trigger: GGGGGAGAAGCCTGCCGTTCTGAAGGCTCGGGACTTCTGCCCCAAAGACTTCGCCGCCGAGAACTGCGGGTGCACTGCCTCAGGGAAGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 72 bp GACCTGGCAAAATTCTCAACTTCTTCCCTGAGGCAGTaGACCCGCAGTTCTCGGCGGCGAAGTCTTTGGGGC +
Preference number: 6 (lower is better)
Translates to: DLAKFSTSSLRQ*TRSSRRRSLWG
Trigger: GCCCCAAAGACTTCGCCGCCGAGAACTGCGGGTGCACTGCCTCAGGGAAGAAGTTGAGAATTTTGCCAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 72 bp GCCCCCTTCAGAAGTACTGTGGTCTCGGCCCCTCCTTaGAACAGATGTCCGCTCGCCACAGTCCAATCAGGT +
Preference number: 6 (lower is better)
Translates to: APFRSTVVSAPP*NRCPLATVQSG
Trigger: ACCTGATTGGACTGTGGCGAGCGGACATCTGTTCAAAGGAGGGGCCGAGACCACAGTACTTCTGAAGGGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS TCA 72 bp CCCCCTTCAGAAGTACTGTGGTCTCGGCCCCTCCTTTaGACAGATGTCCGCTCGCCACAGTCCAATCAGGTT +
Preference number: 6 (lower is better)
Translates to: PPSEVLWSRPLL*TDVRSPQSNQV
Trigger: AACCTGATTGGACTGTGGCGAGCGGACATCTGTTCAAAGGAGGGGCCGAGACCACAGTACTTCTGAAGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 72 bp CTCCTGTTGCCCAAGCTGGAATGCAATGGCGCTATCTaGGCTTATTGCAACCTTTGCCTCTCTGGCTCAAGC +
Preference number: 6 (lower is better)
Translates to: LLLPKLECNGAI*AYCNLCLSGSS
Trigger: GCTTGAGCCAGAGAGGCAAAGGTTGCAATAAGCCAAGATAGCGCCATTGCATTCCAGCTTGGGCAACAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 90 bp GCAGGCCTGTATCATTCCTTTGGTTTCAGTTTTCACGATGCACCCTaGAGGCTAGGCACGCTGATTCAACACACTTGGAGAGCTTCACCG +
Preference number: 6 (lower is better)
Translates to: AGLYHSFGFSFHDAP*RLGTLIQHTWRASP
Trigger: CGGTGAAGCTCTCCAAGTGTGTTGAATCAGCGTGCCTAGCCTCAAGGGTGCATCGTGAAAACTGAAACCAAAGGAATGATACAGGCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 90 bp CATTATCAAGCCCCCTTCAGAAGTACTGTGGTCTCGGCCCCTCCTTaGAACAGATGTCCGCTCGCCACAGTCCAATCAGGTTTAAAGCAA +
Preference number: 6 (lower is better)
Translates to: HYQAPFRSTVVSAPP*NRCPLATVQSGLKQ
Trigger: TTGCTTTAAACCTGATTGGACTGTGGCGAGCGGACATCTGTTCAAAGGAGGGGCCGAGACCACAGTACTTCTGAAGGGGGCTTGATAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 72 bp CCCAAGCTGGAATGCAATGGCGCTATCTTGGCTTATTaGAACCTTTGCCTCTCTGGCTCAAGCGATTCTCCT +
Preference number: 6 (lower is better)
Translates to: PKLECNGAILAY*NLCLSGSSDSP
Trigger: AGGAGAATCGCTTGAGCCAGAGAGGCAAAGGTTGCAATAAGCCAAGATAGCGCCATTGCATTCCAGCTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 72 bp GCACCCTTGAGGCTAGGCACGCTGATTCAACACACTTaGAGAGCTTCACCGAAACACACTAAACACACAGTG +
Preference number: 6 (lower is better)
Translates to: APLRLGTLIQHT*RASPKHTKHTV
Trigger: CACTGTGTGTTTAGTGTGTTTCGGTGAAGCTCTCCAAGTGTGTTGAATCAGCGTGCCTAGCCTCAAGGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 72 bp AGGCCTGTATCATTCCTTTGGTTTCAGTTTTCACGATaGACCCTTGAGGCTAGGCACGCTGATTCAACACAC +
Preference number: 6 (lower is better)
Translates to: RPVSFLWFQFSR*TLEARHADSTH
Trigger: GTGTGTTGAATCAGCGTGCCTAGCCTCAAGGGTGCATCGTGAAAACTGAAACCAAAGGAATGATACAGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 72 bp CCTTCAGTACGATTCCTCTACTCTAGAATCCCCAATTaGTCAGTGAACAGGAACAGCCTACCACCCAAAACA +
Preference number: 6 (lower is better)
Translates to: PSVRFLYSRIPN*SVNRNSLPPKT
Trigger: TGTTTTGGGTGGTAGGCTGTTCCTGTTCACTGACAAATTGGGGATTCTAGAGTAGAGGAATCGTACTGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS TCA 72 bp CCCACTGACCCTAGTTCCTTCTGGTCAAGTCAAATCTaGTCCTTCTGCATGACAGAACTCCAAATCCTTAAA +
Preference number: 6 (lower is better)
Translates to: PTDPSSFWSSQI*SFCMTELQILK
Trigger: TTTAAGGATTTGGAGTTCTGTCATGCAGAAGGATCAGATTTGACTTGACCAGAAGGAACTAGGGTCAGTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CCA 72 bp AGTTCATCTGAACTCAGGCTACTTGCAAACAGAGACTaGGTAACTGCCTCGTGCACCCTCAAAAATAAATTC +
Preference number: 6 (lower is better)
Translates to: SSSELRLLANRD*VTASCTLKNKF
Trigger: GAATTTATTTTTGAGGGTGCACGAGGCAGTTACCCAGTCTCTGTTTGCAAGTAGCCTGAGTTCAGATGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 72 bp AGAGGGGAGCAGAGGGATGACACTAAGGAAACTAAGTaGCTCTCAACTTCAAGATTTTGTGTGGGTTTGTTT +
Preference number: 6 (lower is better)
Translates to: RGEQRDDTKETK*LSTSRFCVGLF
Trigger: AAACAAACCCACACAAAATCTTGAAGTTGAGAGCAACTTAGTTTCCTTAGTGTCATCCCTCTGCTCCCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 90 bp TCAAATTCTCCTTCAGTACGATTCCTCTACTCTAGAATCCCCAATTaGTCAGTGAACAGGAACAGCCTACCACCCAAAACAACTCATTCT +
Preference number: 6 (lower is better)
Translates to: SNSPSVRFLYSRIPN*SVNRNSLPPKTTHS
Trigger: AGAATGAGTTGTTTTGGGTGGTAGGCTGTTCCTGTTCACTGACAAATTGGGGATTCTAGAGTAGAGGAATCGTACTGAAGGAGAATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 72 bp GATTCAGAGAGACAAAGAACTCTAAGGATATGTCTCTaGAAACTGTTCGTTTCACCAAAGGATTCACTGCAG +
Preference number: 6 (lower is better)
Translates to: DSERQRTLRICL*KLFVSPKDSLQ
Trigger: CTGCAGTGAATCCTTTGGTGAAACGAACAGTTTGCAGAGACATATCCTTAGAGTTCTTTGTCTCTCTGAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 90 bp ACTAAGGAAACTAAGTTGCTCTCAACTTCAAGATTTTGTGTGGGTTaGTTTTTCAACGTTTGCAAAGTCAGAAGAGATGGAGGCCATCAG +
Preference number: 6 (lower is better)
Translates to: TKETKLLSTSRFCVG*FFNVCKVRRDGGHQ
Trigger: CTGATGGCCTCCATCTCTTCTGACTTTGCAAACGTTGAAAAACAAACCCACACAAAATCTTGAAGTTGAGAGCAACTTAGTTTCCTTAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS TCA 72 bp GTGATTTTGACACTTAGGTGTCTACCACCTTGGAAATaGGAAAAATTAAGGTCCGTTCCTACCCTACTTAAG +
Preference number: 6 (lower is better)
Translates to: VILTLRCLPPWK*EKLRSVPTLLK
Trigger: CTTAAGTAGGGTAGGAACGGACCTTAATTTTTCTCATTTCCAAGGTGGTAGACACCTAAGTGTCAAAATCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS GCA 72 bp TCTGAGAATGAATACAAGGTCTCACTTATGATAGTATaGTACCCAAAAAGCCAACACAATACCCCAAATATA +
Preference number: 6 (lower is better)
Translates to: SENEYKVSLMIV*YPKSQHNTPNI
Trigger: TATATTTGGGGTATTGTGTTGGCTTTTTGGGTAGCATACTATCATAAGTGAGACCTTGTATTCATTCTCAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 72 bp TCCAGGAAGGCAAAAACTATTATCAAGTTAACCAGTTaGTTTCACTCAATTAGCTTTTTGTTCTTCCACCTG +
Preference number: 6 (lower is better)
Translates to: SRKAKTIIKLTS*FHSISFLFFHL
Trigger: CAGGTGGAAGAACAAAAAGCTAATTGAGTGAAACAAACTGGTTAACTTGATAATAGTTTTTGCCTTCCTGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000615671.2
CDS CAA 72 bp GGCATATTTAATAAAACCTCAAAGTTTATAGGTAACTaGAAGACACCTAGCTCAAATTCTCCTTCAGTACGA +
Preference number: 6 (lower is better)
Translates to: GIFNKTSKFIGN*KTPSSNSPSVR
Trigger: TCGTACTGAAGGAGAATTTGAGCTAGGTGTCTTCAAGTTACCTATAAACTTTGAGGTTTTATTAAATATGCC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000615671.2