Pregenerated sensors for GABARAP (Homo sapiens)
Ensembl gene IDs: ENSG00000170296Ensembl transcript IDs: ENST00000302386.10, ENST00000570856.1, ENST00000571129.5, ENST00000571253.1, ENST00000573928.1, ENST00000577035.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCTATCCCTCCAGCTTGTACCCAGTACTCTTCTTTCCCCACCACTaGAACCCACTGACACCTTGGAAAGACTTAAAATCAGCGGGACGA | + |
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Preference number: 1 (lower is better) Translates to: FYPSSLYPVLFFPHH*NPLTPWKDLKSAGR Trigger: TCGTCCCGCTGATTTTAAGTCTTTCCAAGGTGTCAGTGGGTTTCAGTGGTGGGGAAAGAAGAGTACTGGGTACAAGCTGGAGGGATAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| 3UTR-3UTR CCA 90 bp | ATTCAGTTCAGCTTGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCTTCCCCCAAGTCTACAGCAGGATaGGAAAGGCGGGCAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: IQFSLVVSSLLMCLLPSPKSTAG*ERRAEK Trigger: TTTCTCTGCCCGCCTTTCCCATCCTGCTGTAGACTT...GGGGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000302386.10 ENST00000577035.5 |
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| 3UTR-3UTR TCA 90 bp | AATATACTTCTATCCCTCCAGCTTGTACCCAGTACTCTTCTTTCCCCACCACTGTGGTTTCCTCTTTATTaGTGTGCCTCCTACCTTCCC | + |
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Preference number: 2 (lower is better) Translates to: NILLSLQLVPSTLLSPPLWFPLY*CASYLP Trigger: GGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCA...CAGTGGTGGGGAAAGAAGAGTACTGGGTACAAGCTGGAGGGATAGAAGTATATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| 3UTR-3UTR CCA 90 bp | CCAAAATATACTTCTATCCCTCCAGCTTGTACCCAGTACTCTTCTTTCCCCACCAACCCACTGACACCTTaGAAAGACTTAAAATCAGCG | + |
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Preference number: 2 (lower is better) Translates to: PKYTSIPPACTQYSSFPTNPLTP*KDLKSA Trigger: CGCTGATTTTAAGTCTTTCCAAGGTGTCAGTGGGTT...GGTGGGGAAAGAAGAGTACTGGGTACAAGCTGGAGGGATAGAAGTATATTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| 3UTR-3UTR CAA 90 bp | AATATACTTCTATCCCTCCAGCTTGTACCCAGTACTCTTCTTTCCCCACCACTGAAAATTCAGTTCAGCTaGGTGGTTTCCTCTTTATTG | + |
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Preference number: 3 (lower is better) Translates to: NILLSLQLVPSTLLSPPLKIQFS*VVSSLL Trigger: CAATAAAGAGGAAACCACCAAGCTGAACTGAATTTT...CAGTGGTGGGGAAAGAAGAGTACTGGGTACAAGCTGGAGGGATAGAAGTATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| CDS-3UTR CCA 90 bp | CAACACTTTCTTCCCCTCACGCTCTTCCAAGATTCCTCTCCAAAGCCTCCACCACGGGCTGGACAGGGCTaGGCTGAGGGAACCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: QHFLPLTLFQDSSPKPPPRAGQG*AEGTQG Trigger: CCCCTGGGTTCCCTCAGCCCAGCCCTGTCCAGCCCG...TGGTGGAGGCTTTGGAGAGGAATCTTGGAAGAGCGTGAGGGGAAGAAAGTGTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573928.1 |
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| CDS-3UTR CCA 90 bp | ATTCAGTTCAGCTTGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCTTCCCCCCGGGCTGGACAGGGCTaGGCTGAGGGAACCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: IQFSLVVSSLLMCLLPSPRAGQG*AEGTQG Trigger: CCCCTGGGTTCCCTCAGCCCAGCCCTGTCCAGCCCG...GGGGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAAT 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| CDS-3UTR TCA 90 bp | GACAATCAAGAAGTCTACAGCAGGATGGGAAAGGCGGGCAGAGAAAGGGGAAGATTCTTTCCCCACCACTaGAACCCACTGACACCTTGG | + |
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Preference number: 4 (lower is better) Translates to: DNQEVYSRMGKAGRERGRFFPHH*NPLTPW Trigger: CCAAGGTGTCAGTGGGTTTCAGTGGTGGGGAAAGAA...TCTTCCCCTTTCTCTGCCCGCCTTTCCCATCCTGCTGTAGACTTCTTGATTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| CDS-3UTR CCA 90 bp | GACAATCAAGAAGTCTACAGCAGGATGGGAAAGGCGGGCAGAGAAAGGGGAAGAAAGTCTACAGCAGGATaGGAAAGGCGGGCAGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: DNQEVYSRMGKAGRERGRKSTAG*ERRAEK Trigger: TTTCTCTGCCCGCCTTTCCCATCCTGCTGTAGACTT...TCTTCCCCTTTCTCTGCCCGCCTTTCCCATCCTGCTGTAGACTTCTTGATTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000302386.10 ENST00000570856.1 ENST00000577035.5 |
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| CDS-3UTR TCA 90 bp | ATTCAGTTCAGCTTGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCTTCCCCCTGGTTTCCTCTTTATTaGTGTGCCTCCTACCTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: IQFSLVVSSLLMCLLPSPWFPLY*CASYLP Trigger: GGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCA...GGGGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000302386.10 ENST00000577035.5 |
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| 3UTR CAA 72 bp | ACGAGGGGAGCAACACAAGGCAAAATTCAGTTCAGCTaGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCT | + |
|
Preference number: 4 (lower is better) Translates to: TRGATQGKIQFS*VVSSLLMCLLP Trigger: AGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAATTTTGCCTTGTGTTGCTCCCCTCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| CDS-3UTR GCA 90 bp | CCAAAATATACTTCTATCCCTCCAGCTTGTACCCAGTACTCTTCTTTCCCCACCAAAGCACCCTCTTTTTaGAGACAGGGAAAAGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: PKYTSIPPACTQYSSFPTKAPSF*RQGKAQ Trigger: TTGGGCTTTTCCCTGTCTGCAAAAAGAGGGTGCTTT...GGTGGGGAAAGAAGAGTACTGGGTACAAGCTGGAGGGATAGAAGTATATTTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| CDS-3UTR CCA 90 bp | AACCAAAATATACTTCTATCCCTCCAGCTTGTACCCAGTACTCTTCTTTCCCCAAAGTCTACAGCAGGATaGGAAAGGCGGGCAGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: NQNILLSLQLVPSTLLSPKSTAG*ERRAEK Trigger: TTTCTCTGCCCGCCTTTCCCATCCTGCTGTAGACTT...TGGGGAAAGAAGAGTACTGGGTACAAGCTGGAGGGATAGAAGTATATTTTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| CDS-3UTR GCA 90 bp | ATTCAGTTCAGCTTGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCTTCCCCCGCCGTTTTACTAGCTTaGACACATGAAAATATCTTA | + |
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Preference number: 4 (lower is better) Translates to: IQFSLVVSSLLMCLLPSPAVLLA*THENIL Trigger: TAAGATATTTTCATGTGTGCAAGCTAGTAAAACGGC...GGGGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| CDS-3UTR CAA 90 bp | ATTCAGTTCAGCTTGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCTTCCCCCCCCAGATTCATCTCTTaGTCTTTGTACACGCGGTGC | + |
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Preference number: 5 (lower is better) Translates to: IQFSLVVSSLLMCLLPSPPRFIS*SLYTRC Trigger: GCACCGCGTGTACAAAGACAAAGAGATGAATCTGGG...GGGGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAAT 49% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577035.5 |
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| CDS-3UTR CAA 90 bp | ATTCAGTTCAGCTTGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCTTCCCCCTTCATCTCTTTGTCTTaGTACACGCGGTGCAGCACT | + |
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Preference number: 5 (lower is better) Translates to: IQFSLVVSSLLMCLLPSPFISLS*YTRCST Trigger: AGTGCTGCACCGCGTGTACAAAGACAAAGAGATGAA...GGGGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000577035.5 |
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| CDS-3UTR CAA 90 bp | ATTCAGTTCAGCTTGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCTTCCCCCTTCTATCCCTCCAGCTaGTACCCAGTACTCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: IQFSLVVSSLLMCLLPSPFYPSS*YPVLFF Trigger: AAAGAAGAGTACTGGGTACAAGCTGGAGGGATAGAA...GGGGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000302386.10 |
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| CDS-3UTR CAA 90 bp | GACAATCAAGAAGTCTACAGCAGGATGGGAAAGGCGGGCAGAGAAAGGGGAAGAAAAATTCAGTTCAGCTaGGTGGTTTCCTCTTTATTG | + |
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Preference number: 5 (lower is better) Translates to: DNQEVYSRMGKAGRERGRKIQFS*VVSSLL Trigger: CAATAAAGAGGAAACCACCAAGCTGAACTGAATTTT...TCTTCCCCTTTCTCTGCCCGCCTTTCCCATCCTGCTGTAGACTTCTTGATTGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000302386.10 ENST00000577035.5 |
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| CDS-3UTR CAA 90 bp | ATTCAGTTCAGCTTGGTGGTTTCCTCTTTATTGATGTGCCTCCTACCTTCCCCCAAAATTCAGTTCAGCTaGGTGGTTTCCTCTTTATTG | + |
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Preference number: 5 (lower is better) Translates to: IQFSLVVSSLLMCLLPSPKIQFS*VVSSLL Trigger: CAATAAAGAGGAAACCACCAAGCTGAACTGAATTTT...GGGGGAAGGTAGGAGGCACATCAATAAAGAGGAAACCACCAAGCTGAACTGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000302386.10 ENST00000577035.5 |
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| CDS CCA 72 bp | TCCCTGCGCTGCCTGTCCCGATCCAAGGCCAGGCTGTaGCGTCAGCGTAAGCGTCCCGCGCCCTCGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SLRCLSRSKARL*RQRKRPAPSAL Trigger: CAGGGCCGAGGGCGCGGGACGCTTACGCTGACGCCACAGCCTGGCCTTGGATCGGGACAGGCAGCGCAGGGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000571253.1 |
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| CDS CCA 72 bp | GGAGCCTTTTCTACTATCACCCCACTCCTTTCATCCTaGGTCCCAAGGACAGCAGTTTCAGGCTCGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: GAFSTITPLLSS*VPRTAVSGSLP Trigger: TGGCAGCGAGCCTGAAACTGCTGTCCTTGGGACCCAGGATGAAAGGAGTGGGGTGATAGTAGAAAAGGCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000571129.5 |
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| CDS CCA 72 bp | GCAGCACTGAGTCCCAGAGATCCTGACCTCACTGACTaGAGCTCATTTAAATATCCAGGATCCATCCCCCAA | + |
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Preference number: 6 (lower is better) Translates to: AALSPRDPDLTD*SSFKYPGSIPQ Trigger: TTGGGGGATGGATCCTGGATATTTAAATGAGCTCCAGTCAGTGAGGTCAGGATCTCTGGGACTCAGTGCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000571253.1 |
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| CDS CAA 72 bp | ATAAACAACTATCTTAATCAGACGGAGGTGACTTGTTaGGGTCGACTAGTGATTCAATCTCGCAACCTTAGC | + |
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Preference number: 6 (lower is better) Translates to: INNYLNQTEVTC*GRLVIQSRNLS Trigger: GCTAAGGTTGCGAGATTGAATCACTAGTCGACCCAAACAAGTCACCTCCGTCTGATTAAGATAGTTGTTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000571253.1 |
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