RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FSIP2 (Homo sapiens)

Ensembl gene IDs: ENSG00000188738

Ensembl transcript IDs: ENST00000415915.5, ENST00000424728.6, ENST00000429412.1, ENST00000469367.1, ENST00000611759.1

Found 317 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCATTCAGGCATCGTCTTTaGTGTGGCCATGTCAAGCTC +
Preference number: 2 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSFRHRL*CGHVKL
Trigger: GAGCTTGACATGGCCACACCAAAGACGATGCCTGAA...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp AGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTGGGAGTTTCTGAAATaGCTTCCTTTGAGGGATTTG +
Preference number: 2 (lower is better)
Translates to: RGCFRHRLWCGHVKLSNSWEFLK*LPLRDL
Trigger: CAAATCCCTCAAAGGAAGTCATTTCAGAAACTCCCA...GCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGGCACTTGGGTCTGAGTaGCAATCTTCAGCCTCACCA +
Preference number: 2 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWALGSE*QSSASP
Trigger: TGGTGAGGCTGAAGATTGTCACTCAGACCCAAGTGC...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp GATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCTTTGAGCTTTTCCTCCCAAGATaGAGAGGCTGTTTCAGGCAT +
Preference number: 2 (lower is better)
Translates to: DPCLETSGLGVSEMTSFELFLPR*RGCFRH
Trigger: ATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAG...CTCAAAGGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CCA 90 bp GTAAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGGCATCGTCTTTGGTGTaGCCATGTCAAGCTCAGCAA +
Preference number: 2 (lower is better)
Translates to: VSILISGTKASVFILVSWASSLV*PCQAQQ
Trigger: TTGCTGAGCTTGACATGGCCACACCAAAGACGATGC...CCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp ATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCGCACTGGCTGTGGTCTaGCAACATTTACTTAGTGAC +
Preference number: 2 (lower is better)
Translates to: ILDPCLETSGLGVSEMTSALAVV*QHLLSD
Trigger: GTCACTAAGTAAATGTTGTCAGACCACAGCCAGTGC...GGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTCTTATATTCTGAAATaGATTTCTAGCAACGGCCTC +
Preference number: 2 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVSYILK*ISSNGL
Trigger: GAGGCCGTTGCTAGAAATTCATTTCAGAATATAAGA...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
3UTR-3UTR CCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTGCATCGTCTTTGGTGTaGCCATGTCAAGCTCAGCAA +
Preference number: 2 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTASSLV*PCQAQQ
Trigger: TTGCTGAGCTTGACATGGCCACACCAAAGACGATGC...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CCA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAGAAATGAGATCTTCTTaGTTGTATGAAGATGAACTC +
Preference number: 2 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSEMRSS*LYEDEL
Trigger: GAGTTCATCTTCATACAACCAAGAAGATCTCATTTC...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CCA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCAATGCCTGTGAAACTCTaGAAAAATTTCTCGTGGGTG +
Preference number: 2 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPMPVKL*KNFSWV
Trigger: CACCCACGAGAAATTTTTCCAGAGTTTCACAGGCAT...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR TCA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTCTTTTCCTCCCAAGATaGAGAGGCTGTTTCAGGCAT +
Preference number: 2 (lower is better)
Translates to: GICTAKNILGSFKDGDKLLFLPR*RGCFRH
Trigger: ATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAG...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp GTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGAGCCTCACCAGTAGATaGAATGAGATCTTCTTGGTT +
Preference number: 2 (lower is better)
Translates to: VSILDPCLETSGLGVSEMSLTSR*NEIFLV
Trigger: AACCAAGAAGATCTCATTTCATCTACTGGTGAGGCT...CATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp CCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCAGCACTTGGGTCTGAGTaGCAATCTTCAGCCTCACCA +
Preference number: 2 (lower is better)
Translates to: PRTSLDLSKMVINLTLFPALGSE*QSSASP
Trigger: TGGTGAGGCTGAAGATTGTCACTCAGACCCAAGTGC...TGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTTTTAGCACTTGGGTCTaGGTGACAATCTTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTFSTWV*VTIFSL
Trigger: GAGGCTGAAGATTGTCACTCAGACCCAAGTGCTAAA...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATATTTAGCACTTGGGTCTaGGTGACAATCTTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: FEGFALPRTSLDLSKMVIFSTWV*VTIFSL
Trigger: GAGGCTGAAGATTGTCACTCAGACCCAAGTGCTAAA...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCATTGGCTTGCTTGTGGTaGACACTTTACTGTATATAC +
Preference number: 2 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPLACLW*TLYCIY
Trigger: GTATATACAGTAAAGTGTTCACCACAAGCAAGCCAA...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR TCA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAGGCATCACACTACCTaGCTTCAAACTATACTACAA +
Preference number: 2 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPRHHTT*LQTILQ
Trigger: TTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCT...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR CAA 90 bp AAGGAAGGGATCCAGGTTATTCAATTAGGAAAAGAGGAAGTCAAATaGTCCCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCC +
Preference number: 2 (lower is better)
Translates to: KEGIQVIQLGKEEVK*SLFADDMTVYLENP
Trigger: GGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATAACCTGGATCCCTTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR TCA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCGCACTGGCTGTGGTCTaGCAACATTTACTTAGTGAC +
Preference number: 2 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFALAVV*QHLLSD
Trigger: GTCACTAAGTAAATGTTGTCAGACCACAGCCAGTGC...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTTCCAGTCTTATCCAATaGGGTACGTCTTTCTGTCTT +
Preference number: 2 (lower is better)
Translates to: GICTAKNILGSFKDGDKLSSLIQ*GTSFCL
Trigger: AAGACAGAAAGACGTACCTCATTGGATAAGACTGGA...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
3UTR-3UTR GCA 90 bp CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCGTGGGTGATACCTaGGCTGAAATAATTGAACCT +
Preference number: 2 (lower is better)
Translates to: QAFLYTNNRQTESQIMSELVGDT*AEIIEP
Trigger: AGGTTCAATTATTTCAGCGCAGGTATCACCCACGAG...TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CCA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTATTTGCACTGGCTGTaGTCTGACAACATTTACTTA +
Preference number: 2 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWYLHWL*SDNIYL
Trigger: TAAGTAAATGTTGTCAGACCACAGCCAGTGCAAATA...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CCA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTTTCAATATTTGCACTaGCTGTGGTCTGACAACATT +
Preference number: 2 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWFQYLH*LWSDNI
Trigger: AATGTTGTCAGACCACAGCCAGTGCAAATATTGAAA...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR CAA 90 bp TCTGAAATGACTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTaGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGC +
Preference number: 2 (lower is better)
Translates to: SEMTSFEGFALPRTS*DLSKMVINLTLFPC
Trigger: GCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAGTCATTTCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTAATAGGAAATTCCTTCTaGTCCTTCATGTCTCAACGC +
Preference number: 2 (lower is better)
Translates to: MGRKNQYRENGHTAQGNLIGNSF*SFMSQR
Trigger: GCGTTGAGACATGAAGGATCAGAAGGAATTTCCTAT...TAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CCA 90 bp CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAAACCTTAATAAAGTTGTaGTGTGGGAGAGAAGCTGCT +
Preference number: 2 (lower is better)
Translates to: QAFLYTNNRQTESQIMSETLIKL*CGREAA
Trigger: AGCAGCTTCTCTCCCACACCACAACTTTATTAAGGT...TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR TCA 90 bp AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATCCATCAAGCTACCGATaGCTTTCTTCACAGAATTGG +
Preference number: 2 (lower is better)
Translates to: NLLKLISNFSKVSGYKINPSSYR*LSSQNW
Trigger: CCAATTCTGTGAAGAAAGTCATCGGTAGCTTGATGG...ATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR GCA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGTGTGGGAGAGAAGCTaGTGTAAAAGCAGAAAACAG +
Preference number: 2 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRVWERS*CKSRKQ
Trigger: CTGTTTTCTGCTTTTACAGCAGCTTCTCTCCCACAC...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR GCA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTCTTTTCAAACACTCCTaGTTAAGTTTCTCAAGAGGT +
Preference number: 2 (lower is better)
Translates to: GICTAKNILGSFKDGDKLLFKHS*LSFSRG
Trigger: ACCTCTTGAGAAACTTAAGCAGGAGTGTTTGAAAAG...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
3UTR-3UTR CCA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATATTTCAATATTTGCACTaGCTGTGGTCTGACAACATT +
Preference number: 2 (lower is better)
Translates to: FEGFALPRTSLDLSKMVIFQYLH*LWSDNI
Trigger: AATGTTGTCAGACCACAGCCAGTGCAAATATTGAAA...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR TCA 90 bp CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAATATCATATTGGGCCATaGCTATCTTTCCAAGTATAC +
Preference number: 2 (lower is better)
Translates to: QAFLYTNNRQTESQIMSEYHIGP*LSFQVY
Trigger: GTATACTTGGAAAGATAGTCATGGCCCAATATGATA...TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR GCA 90 bp ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTAATTATCCTGTACATCTaGCTGATAAACAACAGAAGC +
Preference number: 2 (lower is better)
Translates to: MGRKNQYRENGHTAQGNLIILYI*LINNRS
Trigger: GCTTCTGTTGTTTATCAGGCAGATGTACAGGATAAT...TAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR GCA 90 bp TGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAACCCACTTCCTTTATTaGTCTTATCATATTGGGCCA +
Preference number: 2 (lower is better)
Translates to: CTKITSILIHQQQTNREPTHFLY*SYHIGP
Trigger: TGGCCCAATATGATAAGAGCAATAAAGGAAGTGGGT...TGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTGAAATGAGATCTTCTTaGTTGTATGAAGATGAACTC +
Preference number: 2 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTEMRSS*LYEDEL
Trigger: GAGTTCATCTTCATACAACCAAGAAGATCTCATTTC...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CCA 90 bp TGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAACATTCCATGCTCATaGGTAGGAAGAATCAATATC +
Preference number: 2 (lower is better)
Translates to: CTKITSILIHQQQTNREPNIPCS*VGRINI
Trigger: GATATTGATTCTTCCTACCCATGAGCATGGAATGTT...TGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR GCA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTCCTGAGCAAAAATTGTaGCATTTTTCCTTGAATGAT +
Preference number: 2 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRPEQKL*HFSLND
Trigger: ATCATTCAAGGAAAAATGGCACAATTTTTGCTCAGG...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CAA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCATTTCAGGCATCGTCTTaGGTGTGGCCATGTCAAGCT +
Preference number: 3 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSFQASS*VWPCQA
Trigger: AGCTTGACATGGCCACACCAAAGACGATGCCTGAAA...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCACAGTACTTTCAATATTaGCACTGGCTGTGGTCTGAC +
Preference number: 3 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSQYFQY*HWLWSD
Trigger: GTCAGACCACAGCCAGTGCAAATATTGAAAGTACTG...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCACTGCCAAGAACATCCTaGGATCTTTCAAAGATGGTG +
Preference number: 3 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSLPRTS*DLSKMV
Trigger: CACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAG...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR TCA 72 bp TTCTTCTTTCTTACACTGGGGCTTTTCCTCCCAAGATaGAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGC +
Preference number: 3 (lower is better)
Translates to: FFFLTLGLFLPR*RGCFRHRLWCG
Trigger: GCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAAAGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp TTTCTTCTTTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGCAGCATTTTAGATCCTaGTTTGGAGACATCGGGCTT +
Preference number: 3 (lower is better)
Translates to: FLLSYTGAFPPKMKRLFQQHFRS*FGDIGL
Trigger: AAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTG...CTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAAAGAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCATCTCCTTCTCTTCTTTaGAAGGATCCAAAAATGCCT +
Preference number: 3 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPSPSLL*KDPKMP
Trigger: AGGCATTTTTGGATCCTTCAAAAGAAGAGAAGGAGA...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CAA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGGACTTAGGAGAAAGTTaGCTTTGTATTGGCTTCTTG +
Preference number: 3 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWDLGES*LCIGFL
Trigger: CAAGAAGCCAATACAAAGCAAACTTTCTCCTAAGTC...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTCAGCATTTTAGATCCTaGTTTGGAGACATCGGGCTT +
Preference number: 3 (lower is better)
Translates to: GICTAKNILGSFKDGDKLQHFRS*FGDIGL
Trigger: AAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTG...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAACCCTGAGCAAAAATaGTGCCATTTTTCCTTGAAT +
Preference number: 3 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPNPEQK*CHFSLN
Trigger: ATTCAAGGAAAAATGGCACAATTTTTGCTCAGGGTT...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR TCA 72 bp CTTCTGCCACCACACACAAATAGTAACTACATGAAGTaGGGATATGTTAATTGGCTTGCTTGTGGTGAACAC +
Preference number: 3 (lower is better)
Translates to: LLPPHTNSNYMK*GYVNWLACGEH
Trigger: GTGTTCACCACAAGCAAGCCAATTAACATATCCTCACTTCATGTAGTTACTATTTGTGTGTGGTGGCAGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR TCA 72 bp GTGTTCTTCTGCCACCACACACAAATAGTAACTACATaGAGTGAGGATATGTTAATTGGCTTGCTTGTGGTG +
Preference number: 3 (lower is better)
Translates to: VFFCHHTQIVTT*SEDMLIGLLVV
Trigger: CACCACAAGCAAGCCAATTAACATATCCTCACTTCATGTAGTTACTATTTGTGTGTGGTGGCAGAAGAACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CAA 90 bp AGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTAGGAGAAAGTTTGCTTaGTATTGGCTTCTTGACTTC +
Preference number: 3 (lower is better)
Translates to: SILDPCLETSGLGVSEMTRRKFA*YWLLDF
Trigger: GAAGTCAAGAAGCCAATACAAAGCAAACTTTCTCCT...AGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTTTTCAGGCATCGTCTTaGGTGTGGCCATGTCAAGCT +
Preference number: 3 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFFQASS*VWPCQA
Trigger: AGCTTGACATGGCCACACCAAAGACGATGCCTGAAA...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
41% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAGGAGAAAGTTTGCTTaGTATTGGCTTCTTGACTTC +
Preference number: 3 (lower is better)
Translates to: GICTAKNILGSFKDGDKLRRKFA*YWLLDF
Trigger: GAAGTCAAGAAGCCAATACAAAGCAAACTTTCTCCT...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACATCCCAATCAGCATTaGTCTCCTTCTCTTCTTTTG +
Preference number: 3 (lower is better)
Translates to: QAFLYTNNRQTESQIMSEHPNQH*SPSLLL
Trigger: CAAAAGAAGAGAAGGAGACAAATGCTGATTGGGATG...TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR TCA 72 bp GAACTTTCTTCTAATATTTTAGCACTTGGGTCTGAGTaGCAATCTTCAGCCTCACCAGTAGATGAAATGAGA +
Preference number: 3 (lower is better)
Translates to: ELSSNILALGSE*QSSASPVDEMR
Trigger: TCTCATTTCATCTACTGGTGAGGCTGAAGATTGTCACTCAGACCCAAGTGCTAAAATATTAGAAGAAAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR GCA 72 bp TGTGAAACTCTGGAAAAATTTCTCGTGGGTGATACCTaGGCTGAAATAATTGAACCTTGGCCTGAAATATTT +
Preference number: 3 (lower is better)
Translates to: CETLEKFLVGDT*AEIIEPWPEIF
Trigger: AAATATTTCAGGCCAAGGTTCAATTATTTCAGCGCAGGTATCACCCACGAGAAATTTTTCCAGAGTTTCACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CAA 90 bp ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACATCCCATCTCTCTTTaGATTTATACCATTATCCTG +
Preference number: 3 (lower is better)
Translates to: MGRKNQYRENGHTAQGNLHPISL*IYTIIL
Trigger: CAGGATAATGGTATAAATCAAAAGAGAGATGGGATG...TAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CAA 90 bp TGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCATATACCTTAATAAAGTaGTGGTGTGGGAGAGAAGCT +
Preference number: 3 (lower is better)
Translates to: CTKITSILIHQQQTNREPYTLIK*WCGREA
Trigger: AGCTTCTCTCCCACACCACAACTTTATTAAGGTATA...TGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR-3UTR CAA 90 bp CTAAAAGAAGTAAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGACTTAGGAGAAAGTTaGCTTTGTATTGGCTTCTTG +
Preference number: 3 (lower is better)
Translates to: LKEVSILISGTKASVFILDLGES*LCIGFL
Trigger: CAAGAAGCCAATACAAAGCAAACTTTCTCCTAAGTC...CAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTTACTTCTTTTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR-3UTR CAA 90 bp TGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATATGTTAATTGGCTaGCTTGTGGTGAACACTTTA +
Preference number: 3 (lower is better)
Translates to: CTKITSILIHQQQTNREPDMLIG*LVVNTL
Trigger: TAAAGTGTTCACCACAAGCAAGCCAATTAACATATC...TGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CCA 90 bp AGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTTCAGGCATCGTCTTTaGTGTGGCCATGTCAAGCTC +
Preference number: 4 (lower is better)
Translates to: RGCFRHRLWCGHVKLSNSFRHRL*CGHVKL
Trigger: GAGCTTGACATGGCCACACCAAAGACGATGCCTGAA...GCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp AGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCGCACTGGCTGTGGTCTaGCAACATTTACTTAGTGAC +
Preference number: 4 (lower is better)
Translates to: RLFQASSLVWPCQAQQQLALAVV*QHLLSD
Trigger: GTCACTAAGTAAATGTTGTCAGACCACAGCCAGTGC...GAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCGCACTTGGGTCTGAGTaGCAATCTTCAGCCTCACCA +
Preference number: 4 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVALGSE*QSSASP
Trigger: TGGTGAGGCTGAAGATTGTCACTCAGACCCAAGTGC...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
3UTR CAA 72 bp CCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTaGGTGTGGCCATGTCAAGCTCAGCAACAGCTCTTT +
Preference number: 4 (lower is better)
Translates to: PPKMKRLFQASS*VWPCQAQQQLF
Trigger: AAAGAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCATTTAGCACTTGGGTCTaGGTGACAATCTTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSFSTWV*VTIFSL
Trigger: GAGGCTGAAGATTGTCACTCAGACCCAAGTGCTAAA...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp AGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCATCCTGGTGAGCTGGTaGGGAAGATCTGGAAATATT +
Preference number: 4 (lower is better)
Translates to: RLFQASSLVWPCQAQQQLILVSW*GRSGNI
Trigger: AATATTTCCAGATCTTCCTCACCAGCTCACCAGGAT...GAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp AGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCAGCCTCACCAGTAGATaGAATGAGATCTTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: RLFQASSLVWPCQAQQQLSLTSR*NEIFLV
Trigger: AACCAAGAAGATCTCATTTCATCTACTGGTGAGGCT...GAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCACTTCACTATCTGGAGTaGGAATTTGGGACAGAAAGC +
Preference number: 4 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSLHYLE*EFGTES
Trigger: GCTTTCTGTCCCAAATTCCCACTCCAGATAGTGAAG...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp CCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTAGCCTCACCAGTAGATaGAATGAGATCTTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: PKMKRLFQASSLVWPCQASLTSR*NEIFLV
Trigger: AACCAAGAAGATCTCATTTCATCTACTGGTGAGGCT...AGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR GCA 90 bp CCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTTTCTGTGGAGTCACTTaGTTTCCTAAGCAGCTTTTG +
Preference number: 4 (lower is better)
Translates to: PKMKRLFQASSLVWPCQAFCGVT*FPKQLL
Trigger: CAAAAGCTGCTTAGGAAAGCAAGTGACTCCACAGAA...AGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR GCA 90 bp AGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCCTCTTCTCCCCTCATTaGTTGATGTTCGAATTCTTA +
Preference number: 4 (lower is better)
Translates to: RGCFRHRLWCGHVKLSNSLFSPH*LMFEFL
Trigger: TAAGAATTCGAACATCAAGCAATGAGGGGAGAAGAG...GCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCCTTAATGCTGGATGGTaGTTCATCTGTAGTTGGCTC +
Preference number: 4 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVLNAGW*FICSWL
Trigger: GAGCCAACTACAGATGAAGCACCATCCAGCATTAAG...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CCA 90 bp AGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCTCCCTAGATTTCTCTTaGACTTCAAGGAGGATAACT +
Preference number: 4 (lower is better)
Translates to: RLFQASSLVWPCQAQQQLSLDFS*TSRRIT
Trigger: AGTTATCCTCCTTGAAGTCCAAGAGAAATCTAGGGA...GAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp AGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCATTTTCCTTGTCATTTaGTTCTGTTTGCCACTTGTC +
Preference number: 4 (lower is better)
Translates to: RLFQASSLVWPCQAQQQLIFLVI*FCLPLV
Trigger: GACAAGTGGCAAACAGAATCAAATGACAAGGAAAAT...GAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp AGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTGGATAGCACAGTATTaGCAATATTTTCTGCAGCTA +
Preference number: 4 (lower is better)
Translates to: RGCFRHRLWCGHVKLSNSWIAQY*QYFLQL
Trigger: TAGCTGCAGAAAATATTGTCAATACTGTGCTATCCA...GCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTAGCACTTGGGTCTGAGTaGCAATCTTCAGCCTCACCA +
Preference number: 4 (lower is better)
Translates to: NEFLATASRGFTSSLPVLALGSE*QSSASP
Trigger: TGGTGAGGCTGAAGATTGTCACTCAGACCCAAGTGC...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTGGGAGTTTCTGAAATaGCTTCCTTTGAGGGATTTG +
Preference number: 4 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVWEFLK*LPLRDL
Trigger: CAAATCCCTCAAAGGAAGTCATTTCAGAAACTCCCA...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp CCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTTATGGTGATGAAGTTTaGCATTCTTTGCTGGCTGTT +
Preference number: 4 (lower is better)
Translates to: PKMKRLFQASSLVWPCQAYGDEV*HSLLAV
Trigger: AACAGCCAGCAAAGAATGTCAAACTTCATCACCATA...AGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCATTGTATAATCTCTTGTaGTCCAAACTGTGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSLYNLL*SKLWQE
Trigger: CTCTTGCCACAGTTTGGATCACAAGAGATTATACAA...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp AGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCTTCTTTGTTGGTTCCTaGTTGTTGCAGTATGTTACT +
Preference number: 4 (lower is better)
Translates to: RLFQASSLVWPCQAQQQLFFVGS*LLQYVT
Trigger: AGTAACATACTGCAACAATCAGGAACCAACAAAGAA...GAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp AGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCTGTGGTGACATGTCTTaGTATCAGATGAACTTCATT +
Preference number: 4 (lower is better)
Translates to: RLFQASSLVWPCQAQQQLCGDMS*YQMNFI
Trigger: AATGAAGTTCATCTGATAGCAAGACATGTCACCACA...GAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR GCA 90 bp AGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCGAGTTTCGAATAATATaGTGGTTCTGGAGAAGAAGA +
Preference number: 4 (lower is better)
Translates to: RGCFRHRLWCGHVKLSNSEFRII*WFWRRR
Trigger: TCTTCTTCTCCAGAACCAGCATATTATTCGAAACTC...GCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp GTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGCGATGGCATAGTTTCTaGATCAGGCCTTTTCGTTGG +
Preference number: 4 (lower is better)
Translates to: VSILDPCLETSGLGVSEMRWHSF*IRPFRW
Trigger: CCAACGAAAAGGCCTGATTCAGAAACTATGCCATCG...CATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGCTTTTCCTCCCAAGATaGAGAGGCTGTTTCAGGCAT +
Preference number: 4 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWLFLPR*RGCFRH
Trigger: ATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAG...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTTTAGCACTTGGGTCTaGGTGACAATCTTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWFSTWV*VTIFSL
Trigger: GAGGCTGAAGATTGTCACTCAGACCCAAGTGCTAAA...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTTTACCCCCAGGGAACTaGTTTCCCTTATCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTLPPGN*FPLSGL
Trigger: CAGGCCAGATAAGGGAAATCAGTTCCCTGGGGGTAA...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp CCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTTTTTTCATCTTTGCTTaGGGAACTTGGCAACCTTAT +
Preference number: 4 (lower is better)
Translates to: PKMKRLFQASSLVWPCQAFFIFA*GTWQPY
Trigger: ATAAGGTTGCCAAGTTCCTCAAGCAAAGATGAAAAA...AGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGG
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp CCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTTTTTCGTTATCCTTTTaGCCTCCAGATACTTCAGAT +
Preference number: 4 (lower is better)
Translates to: PKMKRLFQASSLVWPCQAFSLSF*PPDTSD
Trigger: ATCTGAAGTATCTGGAGGGCAAAAGGATAACGAAAA...AGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp CCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTAAAGTTAGATTCCCTTaGTCTGTGGTCTTGTACTTT +
Preference number: 4 (lower is better)
Translates to: PKMKRLFQASSLVWPCQAKVRFP*SVVLYF
Trigger: AAAGTACAAGACCACAGACCAAGGGAATCTAACTTT...AGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCAAGAATCTTCCCGGCTaGCTTCAAGGTTTTCATTTT +
Preference number: 4 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVKNLPG*LQGFHF
Trigger: AAAATGAAAACCTTGAAGCCAGCCGGGAAGATTCTT...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTAGCATCGTCTTTGGTGTaGCCATGTCAAGCTCAGCAA +
Preference number: 4 (lower is better)
Translates to: NEFLATASRGFTSSLPVLASSLV*PCQAQQ
Trigger: TTGCTGAGCTTGACATGGCCACACCAAAGACGATGC...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CCA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTACCTACACGTTTGTGTTaGAGAGTCTCTTCTCCCCTC +
Preference number: 4 (lower is better)
Translates to: NEFLATASRGFTSSLPVLPTRLC*RVSSPL
Trigger: GAGGGGAGAAGAGACTCTCCAACACAAACGTGTAGG...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CCA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTATCTTAATGCTGGATaGTGCTTCATCTGTAGTTGG +
Preference number: 4 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVYLNAG*CFICSW
Trigger: CCAACTACAGATGAAGCACCATCCAGCATTAAGATA...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp AAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGTGTCCCCTGTGAAAGTCTaGGATGTGAGGATTTCATCG +
Preference number: 4 (lower is better)
Translates to: KHTYIRYKSFSVHPGELVSPVKV*DVRISS
Trigger: CGATGAAATCCTCACATCTCAGACTTTCACAGGGGA...CACCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp GTAAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGGCACTGGCTGTGGTCTaGCAACATTTACTTAGTGAC +
Preference number: 4 (lower is better)
Translates to: VSILISGTKASVFILVSWALAVV*QHLLSD
Trigger: GTCACTAAGTAAATGTTGTCAGACCACAGCCAGTGC...CCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTAAGGTACTTTAGGAACTaGAGACACTTTACCCCCAGG +
Preference number: 4 (lower is better)
Translates to: NEFLATASRGFTSSLPVLRYFRN*RHFTPR
Trigger: CCTGGGGGTAAAGTGTCTTCAGTTCCTAAAGTACCT...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAACTATTTTACCTGCTaGTATGATTTGATCAGATGG +
Preference number: 4 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSNYFTC*YDLIRW
Trigger: CCATCTGATCAAATCATAGCAGCAGGTAAAATAGTT...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp ATTTTTGTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGCATCGTCTTTGGTGTaGCCATGTCAAGCTCAGCAA +
Preference number: 4 (lower is better)
Translates to: IFVSILDPCLETSGLGVSASSLV*PCQAQQ
Trigger: TTGCTGAGCTTGACATGGCCACACCAAAGACGATGC...AGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGACAAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp GTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGTGGGAGTTTCTGAAATaGCTTCCTTTGAGGGATTTG +
Preference number: 4 (lower is better)
Translates to: VSILDPCLETSGLGVSEMWEFLK*LPLRDL
Trigger: CAAATCCCTCAAAGGAAGTCATTTCAGAAACTCCCA...CATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR TCA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTAATCCTGGTGAGCTGGTaGGGAAGATCTGGAAATATT +
Preference number: 4 (lower is better)
Translates to: NEFLATASRGFTSSLPVLILVSW*GRSGNI
Trigger: AATATTTCCAGATCTTCCTCACCAGCTCACCAGGAT...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGAACATGTTCATAATCTaGGTGGTGTTCCTCATCCCT +
Preference number: 4 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWNMFII*VVFLIP
Trigger: AGGGATGAGGAACACCACTCAGATTATGAACATGTT...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp GATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCTTTGAGGGCTTTGGTCATAACTaGGTTTCGAATAATATGCTG +
Preference number: 4 (lower is better)
Translates to: DPCLETSGLGVSEMTSFEGFGHN*VSNNML
Trigger: CAGCATATTATTCGAAACTCAGTTATGACCAAAGCC...CTCAAAGGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp AAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGTGTTGAGGGATTTGCACTaGCAAGAACATCCTTGGATC +
Preference number: 4 (lower is better)
Translates to: KHTYIRYKSFSVHPGELVLRDLH*QEHPWI
Trigger: GATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAA...CACCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR GCA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTATGTTGTAACAGACTGTaGCGAATCCCTGCTAATCTC +
Preference number: 4 (lower is better)
Translates to: NEFLATASRGFTSSLPVLCCNRL*RIPANL
Trigger: GAGATTAGCAGGGATTCGGCACAGTCTGTTACAACA...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp GATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCTTTGAGTCTGGATTTAAACAGTaGTCTTCAGGATCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: DPCLETSGLGVSEMTSFESGFKQ*SSGSEA
Trigger: AGCTTCTGATCCTGAAGAGCACTGTTTAAATCCAGA...CTCAAAGGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCACAAATTGTCCCTGTTTaGAGACGACATGACTGTATA +
Preference number: 4 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPQIVPV*RRHDCI
Trigger: TATACAGTCATGTCGTCTGCAAACAGGGACAATTTG...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CCA 90 bp AGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTTAAGTGGAGGCAAATaGCCTGTGACTTCCCTTACT +
Preference number: 4 (lower is better)
Translates to: SILDPCLETSGLGVSEMTLSGGK*PVTSLT
Trigger: AGTAAGGGAAGTCACAGGCCATTTGCCTCCACTTAA...AGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGATGTGCTTTAAAGCATaGCTTAGGGTTGTCCTTAGG +
Preference number: 4 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWMCFKA*LRVVLR
Trigger: CCTAAGGACAACCCTAAGCCATGCTTTAAAGCACAT...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp AAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGTGCCTTTTCGTTGGCTCTaGGTTTTTAACTGTGTCTTC +
Preference number: 4 (lower is better)
Translates to: KHTYIRYKSFSVHPGELVPFRWL*VFNCVF
Trigger: GAAGACACAGTTAAAAACTCAGAGCCAACGAAAAGG...CACCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTACTTTCTCGTTGGTTTTaGGGATCATCTGGTTTACTG +
Preference number: 4 (lower is better)
Translates to: NEFLATASRGFTSSLPVLLSRWF*GSSGLL
Trigger: CAGTAAACCAGATGATCCTCAAAACCAACGAGAAAG...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGTACAGGCACAGTAGGTaGTTCCTTGGTGGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMYRHSR*FLGGWY
Trigger: GTACCACCCACCAAGGAATCACCTACTGTGCCTGTA...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCAGATGGTGTTACATCTTaGTTAGCCAATTGTAAGTCA +
Preference number: 4 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPDGVTS*LANCKS
Trigger: TGACTTACAATTGGCTAATCAAGATGTAACACCATC...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR GCA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTTGGCAGTCTTGGATCTaGTGTCTTTTAGGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: GICTAKNILGSFKDGDKLWQSWI*CLLGSS
Trigger: AGAAGACCCTAAAAGACAGCAGATCCAAGACTGCCA...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR GCA 90 bp TTTCCCAGCTTTTACACATACCCACTTCCTTTATTGCTCTTATCATATTGGGCCATATCCAAATATCTATaGCTCATCAGCCGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: FPSFYTYPLPLLLLSYWAISKYL*LISRSW
Trigger: CCAGGAGCGGCTGATGAGGCATAGATATTTGGATAT...GGCCCAATATGATAAGAGCAATAAAGGAAGTGGGTATGTGTAAAAGCTGGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CCA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCTTCAGGCATCGTCTTTaGTGTGGCCATGTCAAGCTC +
Preference number: 4 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFFRHRL*CGHVKL
Trigger: GAGCTTGACATGGCCACACCAAAGACGATGCCTGAA...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp TTTCTTCTTTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGTTTGACATTCTTTGCTaGCTGTTTGGGCCAACTTTT +
Preference number: 4 (lower is better)
Translates to: FLLSYTGAFPPKMKRLFQFDILC*LFGPTF
Trigger: AAAAGTTGGCCCAAACAGCCAGCAAAGAATGTCAAA...CTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAAAGAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp CCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCAGAGGCAAATGGCCTGTaGCTTCCCTTACTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: PRTSLDLSKMVINLTLFPEANGL*LPLLFD
Trigger: ATCAAAGAGTAAGGGAAGTCACAGGCCATTTGCCTC...TGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCATCTCCAGCTGACATaGTGTGTGACAACCCAATGG +
Preference number: 4 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMHLQLT*CVTTQW
Trigger: CCATTGGGTTGTCACACATCATGTCAGCTGGAGATG...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp ATTTTTGTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTAGATTGGTAAACTGCTaGGGCTATGCTTGTTTGGAA +
Preference number: 4 (lower is better)
Translates to: IFVSILDPCLETSGLGVSRLVNC*GYACLE
Trigger: TTCCAAACAAGCATAGCCTCAGCAGTTTACCAATCT...AGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGACAAAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp GTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGCAAACCTTTTCTGGATaGAGACTTTTCCTTAGACTT +
Preference number: 4 (lower is better)
Translates to: VSILDPCLETSGLGVSEMQTFSG*RLFLRL
Trigger: AAGTCTAAGGAAAAGTCTTCATCCAGAAAAGGTTTG...CATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp GTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGTGTTCTTGGGCCTTTTaGACAATTCTATTAACGTCT +
Preference number: 4 (lower is better)
Translates to: VSILDPCLETSGLGVSEMCSWAF*TILLTS
Trigger: AGACGTTAATAGAATTGTTCAAAAGGCCCAAGAACA...CATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp GTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGTCTTATATTCTGAAATaGATTTCTAGCAACGGCCTC +
Preference number: 4 (lower is better)
Translates to: VSILDPCLETSGLGVSEMSYILK*ISSNGL
Trigger: GAGGCCGTTGCTAGAAATTCATTTCAGAATATAAGA...CATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTAGTGTGGGAGAGAAGCTaGTGTAAAAGCAGAAAACAG +
Preference number: 4 (lower is better)
Translates to: MGRKNQYRENGHTAQGNLVWERS*CKSRKQ
Trigger: CTGTTTTCTGCTTTTACAGCAGCTTCTCTCCCACAC...TAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CCA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAGTTTCTTCACTATCTaGAGTGGGAATTTGGGACAG +
Preference number: 4 (lower is better)
Translates to: FEGFALPRTSLDLSKMVISFFTI*SGNLGQ
Trigger: CTGTCCCAAATTCCCACTCCAGATAGTGAAGAAACT...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTGAACAATTTGGTTGCTaGAGCCCACAGAAATTTGGT +
Preference number: 4 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTEQFGC*SPQKFG
Trigger: ACCAAATTTCTGTGGGCTCCAGCAACCAAATTGTTC...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAGTTCTCATTAGTGTGTaGTTGACTTGGAAAGCCACA +
Preference number: 4 (lower is better)
Translates to: FEGFALPRTSLDLSKMVIVLISV*LTWKAT
Trigger: TGTGGCTTTCCAAGTCAACCACACACTAATGAGAAC...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp TTTCTTCTTTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGTATTTGCACTGGCTGTaGTCTGACAACATTTACTTA +
Preference number: 4 (lower is better)
Translates to: FLLSYTGAFPPKMKRLFQYLHWL*SDNIYL
Trigger: TAAGTAAATGTTGTCAGACCACAGCCAGTGCAAATA...CTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAAAGAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp TTTCTTCTTTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGCTGGTGAGGAAGATCTaGAAATATTGGTGTTACATT +
Preference number: 4 (lower is better)
Translates to: FLLSYTGAFPPKMKRLFQLVRKI*KYWCYI
Trigger: AATGTAACACCAATATTTCCAGATCTTCCTCACCAG...CTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAAAGAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp TTTCCCAGCTTTTACACATACCCACTTCCTTTATTGCTCTTATCATATTGGGCCATGCCTGTGAAACTCTaGAAAAATTTCTCGTGGGTG +
Preference number: 4 (lower is better)
Translates to: FPSFYTYPLPLLLLSYWAMPVKL*KNFSWV
Trigger: CACCCACGAGAAATTTTTCCAGAGTTTCACAGGCAT...GGCCCAATATGATAAGAGCAATAAAGGAAGTGGGTATGTGTAAAAGCTGGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR TCA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTCTTCTACAGAGGATCTaGCAGAGGTGGGTAAATCTG +
Preference number: 4 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFLLQRI*QRWVNL
Trigger: CAGATTTACCCACCTCTGTCAGATCCTCTGTAGAAG...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGTCATTAGTGTGTGGTTaGCTTGGAAAGCCACAGCTG +
Preference number: 4 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMSLVCG*LGKPQL
Trigger: CAGCTGTGGCTTTCCAAGTCAACCACACACTAATGA...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTTGTCTTGCTATCAGATaGACTTCATTGGAACCCATT +
Preference number: 4 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTCLAIR*TSLEPI
Trigger: AATGGGTTCCAATGAAGTTCATCTGATAGCAAGACA...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp AGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTTCAAGGAGGATAACTaGAAGAGCTTGTCATCTTTT +
Preference number: 4 (lower is better)
Translates to: SILDPCLETSGLGVSEMTFKEDN*KSLSSF
Trigger: AAAAGATGACAAGCTCTTTCAGTTATCCTCCTTGAA...AGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp AAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGTGGTCAACTATGTTTTCTaGAAGGATTTTGCATCCACT +
Preference number: 4 (lower is better)
Translates to: KHTYIRYKSFSVHPGELVVNYVF*KDFAST
Trigger: AGTGGATGCAAAATCCTTTCAGAAAACATAGTTGAC...CACCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp TTTCCCAGCTTTTACACATACCCACTTCCTTTATTGCTCTTATCATATTGGGCCTTGGCTTGCTTGTGGTaGACACTTTACTGTATATAC +
Preference number: 4 (lower is better)
Translates to: FPSFYTYPLPLLLLSYWALACLW*TLYCIY
Trigger: GTATATACAGTAAAGTGTTCACCACAAGCAAGCCAA...GGCCCAATATGATAAGAGCAATAAAGGAAGTGGGTATGTGTAAAAGCTGGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR TCA 90 bp GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCCCATCAAGCTACCGATaGCTTTCTTCACAGAATTGG +
Preference number: 4 (lower is better)
Translates to: GRINIVKMAILPKVIYRFPSSYR*LSSQNW
Trigger: CCAATTCTGTGAAGAAAGTCATCGGTAGCTTGATGG...GAATCTATAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR GCA 90 bp AAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGTGAAACTGCTGAGGCTATaGTTGTTTGGAAAACCATAT +
Preference number: 4 (lower is better)
Translates to: KHTYIRYKSFSVHPGELVKLLRL*LFGKPY
Trigger: ATATGGTTTTCCAAACAAGCATAGCCTCAGCAGTTT...CACCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR GCA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTCTTGAACAATTTGGTTaGTGGAGCCCACAGAAATTT +
Preference number: 4 (lower is better)
Translates to: GICTAKNILGSFKDGDKLLEQFG*WSPQKF
Trigger: AAATTTCTGTGGGCTCCAGCAACCAAATTGTTCAAG...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR GCA 90 bp CCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATTGAGGGATTTGCACTaGCAAGAACATCCTTGGATC +
Preference number: 4 (lower is better)
Translates to: PRTSLDLSKMVINLTLFPLRDLH*QEHPWI
Trigger: GATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAA...TGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTGATTCCCTTGGTCTGTaGTCTTGTACTTTGTTTCTA +
Preference number: 4 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTDSLGL*SCTLFL
Trigger: TAGAAACAAAGTACAAGACCACAGACCAAGGGAATC...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp AAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGTGCAGTGTCATAGAGTTTaGCTTGATTTTGCTTATCAC +
Preference number: 4 (lower is better)
Translates to: KHTYIRYKSFSVHPGELVQCHRV*LDFAYH
Trigger: GTGATAAGCAAAATCAAGCCAAACTCTATGACACTG...CACCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CCA 90 bp ATTTTTGTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGGAAATTCAGTTCTGTaGACAAATTGTCCTCAGGTT +
Preference number: 4 (lower is better)
Translates to: IFVSILDPCLETSGLGVSGNSVL*TNCPQV
Trigger: AACCTGAGGACAATTTGTCCACAGAACTGAATTTCC...AGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGACAAAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000611759.1
3UTR CAA 72 bp GTTGAAGACATTTTTGTCAGCATTTTAGATCCTTGTTaGGAGACATCGGGCTTGGGAGTTTCTGAAATGACT +
Preference number: 4 (lower is better)
Translates to: VEDIFVSILDPC*ETSGLGVSEMT
Trigger: AGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGACAAAAATGTCTTCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR GCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTTCTCTAGGAAAAATGTaGTCTAGCTGTGAAGAAACA +
Preference number: 4 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTSLGKM*SSCEET
Trigger: TGTTTCTTCACAGCTAGAGCACATTTTTCCTAGAGA...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR GCA 90 bp ATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCGAGATATGTTTAAACTaGAAGTCCACAAATGACTCT +
Preference number: 4 (lower is better)
Translates to: ILDPCLETSGLGVSEMTSEICLN*KSTNDS
Trigger: AGAGTCATTTGTGGACTTGCAGTTTAAACATATCTC...GGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR GCA 90 bp CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAAGTTGTTCTTCTGCTGTaGGTTCAAGTTGTTCTAGTT +
Preference number: 4 (lower is better)
Translates to: QAFLYTNNRQTESQIMSEVVLLL*VQVVLV
Trigger: AACTAGAACAACTTGAACGCACAGCAGAAGAACAAC...TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR GCA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTATTTCTGAAAGGATTTTaGATCCACTGGTTACACAAT +
Preference number: 4 (lower is better)
Translates to: NEFLATASRGFTSSLPVLFLKGF*IHWLHN
Trigger: ATTGTGTAACCAGTGGATGCAAAATCCTTTCAGAAA...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTAACCCACTTCCTTTATTaGTCTTATCATATTGGGCCA +
Preference number: 4 (lower is better)
Translates to: MGRKNQYRENGHTAQGNLTHFLY*SYHIGP
Trigger: TGGCCCAATATGATAAGAGCAATAAAGGAAGTGGGT...TAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CCA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATATATTTGCACTGGCTGTaGTCTGACAACATTTACTTA +
Preference number: 4 (lower is better)
Translates to: FEGFALPRTSLDLSKMVIYLHWL*SDNIYL
Trigger: TAAGTAAATGTTGTCAGACCACAGCCAGTGCAAATA...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTTTTCAATATTTGCACTaGCTGTGGTCTGACAACATT +
Preference number: 4 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTFQYLH*LWSDNI
Trigger: AATGTTGTCAGACCACAGCCAGTGCAAATATTGAAA...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp AAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGTGGAAATGAGATCTTCTTaGTTGTATGAAGATGAACTC +
Preference number: 4 (lower is better)
Translates to: KHTYIRYKSFSVHPGELVEMRSS*LYEDEL
Trigger: GAGTTCATCTTCATACAACCAAGAAGATCTCATTTC...CACCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp ATTTTTGTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTCTGGTGAGGAAGATCTaGAAATATTGGTGTTACATT +
Preference number: 4 (lower is better)
Translates to: IFVSILDPCLETSGLGVSLVRKI*KYWCYI
Trigger: AATGTAACACCAATATTTCCAGATCTTCCTCACCAG...AGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGACAAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTCTGATTTCCCTTATCTaGCCTGAAAACCTTAATTTG +
Preference number: 4 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTLISLI*PENLNL
Trigger: CAAATTAAGGTTTTCAGGCCAGATAAGGGAAATCAG...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CCA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCTGCTTCATCTGTAGTTaGCTCTTTATACCTTGGAGG +
Preference number: 4 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFCFICS*LFIPWR
Trigger: CCTCCAAGGTATAAAGAGCCAACTACAGATGAAGCA...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CCA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTTCTTTGCTGGCTGTTTaGGCCAACTTTTGGACCTTT +
Preference number: 4 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFSLLAV*ANFWTF
Trigger: AAAGGTCCAAAAGTTGGCCCAAACAGCCAGCAAAGA...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CCA 90 bp GTAAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGGTGAGCTGGGTCATATATTTATCTTaGGAGATCTCTGTTGCAACT +
Preference number: 4 (lower is better)
Translates to: VSILISGTKASVFILVSWVIYLS*EISVAT
Trigger: AGTTGCAACAGAGATCTCCCAAGATAAATATATGAC...CCAGCTCACCAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTCCATTAGTGTGCCAATaGTCTCACTTGCTACAATGT +
Preference number: 4 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFPLVCQ*SHLLQC
Trigger: ACATTGTAGCAAGTGAGATCATTGGCACACTAATGG...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGTCCAGTCTTATCCAATaGGGTACGTCTTTCTGTCTT +
Preference number: 4 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMSSLIQ*GTSFCL
Trigger: AAGACAGAAAGACGTACCTCATTGGATAAGACTGGA...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTCTGATGAGCAGCATTTaGTGTATGTCATTCACCATG +
Preference number: 4 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRLMSSI*CMSFTM
Trigger: CATGGTGAATGACATACAGCAAATGCTGCTCATCAG...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CCA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAGCTATTTCCTTTCATaGTCTGATCAAAACTACCAA +
Preference number: 4 (lower is better)
Translates to: FEGFALPRTSLDLSKMVISYFLS*SDQNYQ
Trigger: TTGGTAGTTTTGATCAGACCATGAAAGGAAATAGCT...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATACCTTAATAAAGTTGTaGTGTGGGAGAGAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: NLLKLISNFSKVSGYKINTLIKL*CGREAA
Trigger: AGCAGCTTCTCTCCCACACCACAACTTTATTAAGGT...ATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CCA 90 bp CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAAGTTCATTGTAGATTCTaGTTATTAGCCCTTTGTCAG +
Preference number: 4 (lower is better)
Translates to: QAFLYTNNRQTESQIMSEVHCRF*LLALCQ
Trigger: CTGACAAAGGGCTAATAACCAGAATCTACAATGAAC...TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
3UTR CAA 72 bp ATCCAGGTTATTCAATTAGGAAAAGAGGAAGTCAAATaGTCCCTGTTTGCAGACGACATGACTGTATATCTA +
Preference number: 4 (lower is better)
Translates to: IQVIQLGKEEVK*SLFADDMTVYL
Trigger: TAGATATACAGTCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATAACCTGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR TCA 90 bp CCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATTTTACCTGCTGCTATaGTTTGATCAGATGGTAAAG +
Preference number: 4 (lower is better)
Translates to: PRTSLDLSKMVINLTLFPFYLLL*FDQMVK
Trigger: CTTTACCATCTGATCAAATCATAGCAGCAGGTAAAA...TGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTTGTGAATGGAATGAATaGACCCGTAGAAGGATATTC +
Preference number: 4 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFCEWNE*TRRRIF
Trigger: GAATATCCTTCTACGGGTTCATTCATTCCATTCACA...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCGTATCAAAGACTCATTaGAATAAGTACACTGGTCCA +
Preference number: 4 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFVSKTH*NKYTGP
Trigger: TGGACCAGTGTACTTATTTCAATGAGTCTTTGATAC...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCTCTTATATTCTGAAATaGATTTCTAGCAACGGCCTG +
Preference number: 4 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFSYILK*ISSNGL
Trigger: CAGGCCGTTGCTAGAAATTCATTTCAGAATATAAGA...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR TCA 90 bp GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCCCATGTGTTCCATCTTaGCCTCTGTATTTAAATGTA +
Preference number: 4 (lower is better)
Translates to: GRINIVKMAILPKVIYRFPCVPS*PLYLNV
Trigger: TACATTTAAATACAGAGGTCAAGATGGAACACATGG...GAATCTATAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR TCA 90 bp TGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCATATCATATTGGGCCATaGCTATCTTTCCAAGTATAC +
Preference number: 4 (lower is better)
Translates to: CTKITSILIHQQQTNREPYHIGP*LSFQVY
Trigger: GTATACTTGGAAAGATAGTCATGGCCCAATATGATA...TGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR GCA 90 bp TGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAATTATCCTGTACATCTaGCTGATAAACAACAGAAGC +
Preference number: 4 (lower is better)
Translates to: CTKITSILIHQQQTNREPIILYI*LINNRS
Trigger: GCTTCTGTTGTTTATCAGGCAGATGTACAGGATAAT...TGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR GCA 90 bp CCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCACTTTTCAAACACTCCTaGTTAAGTTTCTCAAGAGGT +
Preference number: 4 (lower is better)
Translates to: PRTSLDLSKMVINLTLFPLFKHS*LSFSRG
Trigger: ACCTCTTGAGAAACTTAAGCAGGAGTGTTTGAAAAG...TGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR TCA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTGAAAACCTTAATTTaGGCATCTGAGAACTCCTTT +
Preference number: 4 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMLKTLI*ASENSF
Trigger: AAAGGAGTTCTCAGATGCTCAAATTAAGGTTTTCAG...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR GCA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTGCCAATGATCTCACTTaGTACAATGTTCTCTTTCAA +
Preference number: 4 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFANDLT*YNVLFQ
Trigger: TTGAAAGAGAACATTGTAGCAAGTGAGATCATTGGC...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR GCA 90 bp GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCCCTGAGCAAAAATTGTaGCATTTTTCCTTGAATGAT +
Preference number: 4 (lower is better)
Translates to: GRINIVKMAILPKVIYRFPEQKL*HFSLND
Trigger: ATCATTCAAGGAAAAATGGCACAATTTTTGCTCAGG...GAATCTATAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CCA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCTTTTTAGTTCTGAAGTaGGCAATTTTGTGTCCAGTA +
Preference number: 4 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFFLVLK*AILCPV
Trigger: TACTGGACACAAAATTGCCCACTTCAGAACTAAAAA...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTGCATTTTCAGCTCCTTaGAACAAACTTTCTCTTGAA +
Preference number: 4 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFAFSAP*NKLSLE
Trigger: TTCAAGAGAAAGTTTGTTCCAAGGAGCTGAAAATGC...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CCA 90 bp CTAAAAGAAGTAAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGTTTCAATATTTGCACTaGCTGTGGTCTGACAACATT +
Preference number: 4 (lower is better)
Translates to: LKEVSILISGTKASVFILFQYLH*LWSDNI
Trigger: AATGTTGTCAGACCACAGCCAGTGCAAATATTGAAA...CAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTTACTTCTTTTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp CCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCAGAAATGAGATCTTCTTaGTTGTATGAAGATGAACTC +
Preference number: 4 (lower is better)
Translates to: PRTSLDLSKMVINLTLFPEMRSS*LYEDEL
Trigger: GAGTTCATCTTCATACAACCAAGAAGATCTCATTTC...TGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CCA 90 bp AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATAACATTCCATGCTCATaGGTAGGAAGAATCAATATC +
Preference number: 4 (lower is better)
Translates to: NLLKLISNFSKVSGYKINNIPCS*VGRINI
Trigger: GATATTGATTCTTCCTACCCATGAGCATGGAATGTT...ATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp AGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCCTGCCAAGAACATCCTaGGATCTTTCAAAGATGGTG +
Preference number: 5 (lower is better)
Translates to: RGCFRHRLWCGHVKLSNSLPRTS*DLSKMV
Trigger: CACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAG...GCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp AGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCGTCCCTAGATTTCTCTaGGACTTCAAGGAGGATAAC +
Preference number: 5 (lower is better)
Translates to: RLFQASSLVWPCQAQQQLVPRFL*DFKEDN
Trigger: GTTATCCTCCTTGAAGTCCAAGAGAAATCTAGGGAC...GAGCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCCTTCCTTTGAGGGATTaGCACTGCCAAGAACATCCT +
Preference number: 5 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVLPLRD*HCQEHP
Trigger: AGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp CCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTATTTTAGATCCTTGTTaGGAGACATCGGGCTTGGGA +
Preference number: 5 (lower is better)
Translates to: PKMKRLFQASSLVWPCQAILDPC*ETSGLG
Trigger: TCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAAT...AGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp CCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCATTTTAGATCCTaGTTTGGAGACATCGGGCTT +
Preference number: 5 (lower is better)
Translates to: PKMKRLFQASSLVWPCQAQHFRS*FGDIGL
Trigger: AAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTG...AGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp AGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCTCTCTTCTCCCCTCATaGCTTGATGTTCGAATTCTT +
Preference number: 5 (lower is better)
Translates to: RGCFRHRLWCGHVKLSNSSLLPS*LDVRIL
Trigger: AAGAATTCGAACATCAAGCAATGAGGGGAGAAGAGA...GCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGCCCTACACGTTTGTGTaGGAGAGTCTCTTCTCCCCT +
Preference number: 5 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWPYTFV*ESLFSP
Trigger: AGGGGAGAAGAGACTCTCCAACACAAACGTGTAGGG...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp AGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAAGCTCAGCAACAGCACTTTCTCGTTGGTTTaGAGGATCATCTGGTTTACT +
Preference number: 5 (lower is better)
Translates to: RGCFRHRLWCGHVKLSNSTFSLV*RIIWFT
Trigger: AGTAAACCAGATGATCCTCAAAACCAACGAGAAAGT...GCTGTTGCTGAGCTTGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp GTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGAAGCATGGCTTAGGGTaGTCCTTAGGGCTCACCTTT +
Preference number: 5 (lower is better)
Translates to: VSILDPCLETSGLGVSEMKHGLG*SLGLTF
Trigger: AAAGGTGAGCCCTAAGGACAACCCTAAGCCATGCTT...CATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS TCA 90 bp CACATGTGCAGGAGGAGGTTTTATAGGTGTGGTTGGTCTCCTTACTaGCGTGTCAACTACAAATGCACAGGGTTCTGCCTGAAATGTTTT +
Preference number: 5 (lower is better)
Translates to: HMCRRRFYRCGWSPY*RVNYKCTGFCLKCF
Trigger: AAAACATTTCAGGCAGAACCCTGTGCATTTGTAGTTGACACGTCAGTAAGGAGACCAACCACACCTATAAAACCTCCTCCTGCACATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS-3UTR CAA 90 bp GATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCTTTGAGGTGTCCAGTAAATTTTaGGCATCTCCAGCTGACATG +
Preference number: 5 (lower is better)
Translates to: DPCLETSGLGVSEMTSFEVSSKF*ASPADM
Trigger: CATGTCAGCTGGAGATGCCAAAAATTTACTGGACAC...CTCAAAGGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp GATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCTTTGAGCAGTACTTTCAATATTaGCACTGGCTGTGGTCTGAC +
Preference number: 5 (lower is better)
Translates to: DPCLETSGLGVSEMTSFEQYFQY*HWLWSD
Trigger: GTCAGACCACAGCCAGTGCAAATATTGAAAGTACTG...CTCAAAGGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp TCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCTTTGGTGTGGCCATGTCAGTCATAGAGTTTGGCTaGATTTTGCTTATCACTAAC +
Preference number: 5 (lower is better)
Translates to: SSQDEEAVSGIVFGVAMSVIEFG*ILLITN
Trigger: GTTAGTGATAAGCAAAATCAAGCCAAACTCTATGAC...TGACATGGCCACACCAAAGACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTTTTCAGGCATCGTCTTaGGTGTGGCCATGTCAAGCT +
Preference number: 5 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTFQASS*VWPCQA
Trigger: AGCTTGACATGGCCACACCAAAGACGATGCCTGAAA...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGCTGCCAAGAACATCCTaGGATCTTTCAAAGATGGTG +
Preference number: 5 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWLPRTS*DLSKMV
Trigger: CACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAG...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp AGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTTGGAGACATCGGGCTaGGGAGTTTCTGAAATGACT +
Preference number: 5 (lower is better)
Translates to: SILDPCLETSGLGVSEMTLETSG*GVSEMT
Trigger: AGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAA...AGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp CTTCCTTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGCAGCATTTTAGATCCTaGTTTGGAGACATCGGGCTT +
Preference number: 5 (lower is better)
Translates to: LPLRDLHCQEHPWIFQRWQHFRS*FGDIGL
Trigger: AAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTG...CCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCACATCTTCTGCCATCCTaGTCAGAAGTAACATCTCTT +
Preference number: 5 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPHLLPS*SEVTSL
Trigger: AAGAGATGTTACTTCTGACAAGGATGGCAGAAGATG...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCCAGGTTCTTTTGTTTTaGTGCTGGATATTGTTGAGA +
Preference number: 5 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVQVLLF*CWILLR
Trigger: TCTCAACAATATCCAGCACAAAAACAAAAGAACCTG...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp TTCTTACACTGGGGCTTTTCCTCCCAAGATGAAGAGGCTGTTTCAGGCATCGTCGTATCAGAGAGGACATaGCTTTTACCCATTAAATCT +
Preference number: 5 (lower is better)
Translates to: FLHWGFSSQDEEAVSGIVVSERT*LLPIKS
Trigger: AGATTTAATGGGTAAAAGCAATGTCCTCTCTGATAC...GACGATGCCTGAAACAGCCTCTTCATCTTGGGAGGAAAAGCCCCAGTGTAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp ATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCAATCTCTTGAACAATTaGGTTGCTGGAGCCCACAGA +
Preference number: 5 (lower is better)
Translates to: ILDPCLETSGLGVSEMTSNLLNN*VAGAHR
Trigger: TCTGTGGGCTCCAGCAACCAAATTGTTCAAGAGATT...GGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp GATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCTTTGAGTTTTTCGTTATCCTTTaGCCCTCCAGATACTTCAGA +
Preference number: 5 (lower is better)
Translates to: DPCLETSGLGVSEMTSFEFFVIL*PSRYFR
Trigger: TCTGAAGTATCTGGAGGGCAAAAGGATAACGAAAAA...CTCAAAGGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp AATGAATTTCTAGCAACGGCCTCTAGGGGTTTTACATCCAGTCTTCCAGTCTTAATTTTAGATCCTTGTTaGGAGACATCGGGCTTGGGA +
Preference number: 5 (lower is better)
Translates to: NEFLATASRGFTSSLPVLILDPC*ETSGLG
Trigger: TCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAAT...TAAGACTGGAAGACTGGATGTAAAACCCCTAGAGGCCGTTGCTAGAAATTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp GATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTTCCTTTGAGTGTTTGGGCCAACTTTaGGACCTTTTTAACAACATC +
Preference number: 5 (lower is better)
Translates to: DPCLETSGLGVSEMTSFECLGQL*DLFNNI
Trigger: GATGTTGTTAAAAAGGTCCAAAAGTTGGCCCAAACA...CTCAAAGGAAGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS TCA 90 bp GCTAGATTTACCTTTGTCTCCTTGTCAGCAACGCTGAATCTAGACTaGAAAGTACATGGATTTTCATCCAAAGCCGTGACAGAGGACTTT +
Preference number: 5 (lower is better)
Translates to: ARFTFVSLSATLNLD*KVHGFSSKAVTEDF
Trigger: AAAGTCCTCTGTCACGGCTTTGGATGAAAATCCATGTACTTTTCAGTCTAGATTCAGCGTTGCTGACAAGGAGACAAAGGTAAATCTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CCA 90 bp CTTTGTCTCCTTGTCAGCAACGCTGAATCTAGACTGAAAAGTACATaGATTTTCATCCAAAGCCGTGACAGAGGACTTTCCTTTATAGGT +
Preference number: 5 (lower is better)
Translates to: LCLLVSNAESRLKST*IFIQSRDRGLSFIG
Trigger: ACCTATAAAGGAAAGTCCTCTGTCACGGCTTTGGATGAAAATCCATGTACTTTTCAGTCTAGATTCAGCGTTGCTGACAAGGAGACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS-3UTR CAA 90 bp CCTGTTTGCAGACGACATGACTGTATATCTAGAAAACCCCATTGTCTCAGCCCACATCCCATCTCTCTTTaGATTTATACCATTATCCTG +
Preference number: 5 (lower is better)
Translates to: PVCRRHDCISRKPHCLSPHPISL*IYTIIL
Trigger: CAGGATAATGGTATAAATCAAAAGAGAGATGGGATG...TGGGCTGAGACAATGGGGTTTTCTAGATATACAGTCATGTCGTCTGCAAACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp TTTCCCAGCTTTTACACATACCCACTTCCTTTATTGCTCTTATCATATTGGGCCGCTGATGAGCAGCATTaGCTGTATGTCATTCACCAT +
Preference number: 5 (lower is better)
Translates to: FPSFYTYPLPLLLLSYWAADEQH*LYVIHH
Trigger: ATGGTGAATGACATACAGCAAATGCTGCTCATCAGC...GGCCCAATATGATAAGAGCAATAAAGGAAGTGGGTATGTGTAAAAGCTGGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS TCA 90 bp CATATTCTTGCAAAACTTTGCTGTACACCATGTCAACAATTGTTTTaGCTACATCCCTCTCCACTGGAGGTAAACACAGTCTTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: HILAKLCCTPCQQLF*LHPSPLEVNTVFPQ
Trigger: CTGAGGAAAGACTGTGTTTACCTCCAGTGGAGAGGGATGTAGTCAAAACAATTGTTGACATGGTGTACAGCAAAGTTTTGCAAGAATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS GCA 90 bp GTCAACTACAAATGCACAGGGTTCTGCCTGAAATGTTTTAGTTGTTaGAGATGTGTAGCTTCTATATGTAAAGTCTTCACTGCACGTGCT +
Preference number: 5 (lower is better)
Translates to: VNYKCTGFCLKCFSC*RCVASICKVFTARA
Trigger: AGCACGTGCAGTGAAGACTTTACATATAGAAGCTACACATCTGCAACAACTAAAACATTTCAGGCAGAACCCTGTGCATTTGTAGTTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS GCA 90 bp GTTGACTACAAGATAGCTGAGAATGAAGATGGGTCCCCAGGAGCTTaGTTAACATTTCATGTAGTGTTTCCCCAATTCTTTCTAACACTT +
Preference number: 5 (lower is better)
Translates to: VDYKIAENEDGSPGA*LTFHVVFPQFFLTL
Trigger: AAGTGTTAGAAAGAATTGGGGAAACACTACATGAAATGTTAAGCAAGCTCCTGGGGACCCATCTTCATTCTCAGCTATCTTGTAGTCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS-3UTR CAA 90 bp GTCAGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGATTTCGTTGTCTAGCTaGTTCTTAATTACAGCAAGC +
Preference number: 5 (lower is better)
Translates to: VSILDPCLETSGLGVSEMISLSS*FLITAS
Trigger: GCTTGCTGTAATTAAGAACAAGCTAGACAACGAAAT...CATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTTCCTTTGAGGGATTaGCACTGCCAAGAACATCCT +
Preference number: 5 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFLPLRD*HCQEHP
Trigger: AGGATGTTCTTGGCAGTGCAAATCCCTCAAAGGAAG...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTCATCCCTACACGTTaGTGTTGGAGAGTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFLIPTR*CWRVSS
Trigger: AGAAGAGACTCTCCAACACAAACGTGTAGGGATGAG...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTTTAGACATGAAGTCCTaGCCCATGCCTATGTCCCGA +
Preference number: 5 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRLDMKS*PMPMSR
Trigger: TCGGGACATAGGCATGGGCAAGGACTTCATGTCTAA...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS TCA 90 bp GTTTCATTAAGTGGAGGCAAATGGCCTGTGACTTCCCTTACTCTTTaGTACAACTTATTCAAAAGTTCTTCCACTGCAATGAGCAGTTCA +
Preference number: 5 (lower is better)
Translates to: VSLSGGKWPVTSLTL*YNLFKSSSTAMSSS
Trigger: TGAACTGCTCATTGCAGTGGAAGAACTTTTGAATAAGTTGTATCAAAGAGTAAGGGAAGTCACAGGCCATTTGCCTCCACTTAATGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS-3UTR CAA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGAACCCAATGGCAGTCTaGGATCTGCTGTCTTTTAGG +
Preference number: 5 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMNPMAV*DLLSFR
Trigger: CCTAAAAGACAGCAGATCCAAGACTGCCATTGGGTT...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATATCAGATGGTAAAGCTTaGGTTTGCTTTACCTTTCCA +
Preference number: 5 (lower is better)
Translates to: FEGFALPRTSLDLSKMVISDGKA*VCFTFP
Trigger: TGGAAAGGTAAAGCAAACCAAAGCTTTACCATCTGA...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp GATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTGAGAACTGTAAAAACATGCTTGTaGTTTAGGAAGGGATCCTGT +
Preference number: 5 (lower is better)
Translates to: DGDKLNTVSMLWLLFLRTVKTCL*FRKGSC
Trigger: ACAGGATCCCTTCCTAAACAACAAGCATGTTTTTAC...AGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTCTGTGGTCTTGTACTTaGTTTCTAGTAGAACACGAT +
Preference number: 5 (lower is better)
Translates to: GICTAKNILGSFKDGDKLLWSCT*FLVEHD
Trigger: ATCGTGTTCTACTAGAAACAAAGTACAAGACCACAG...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAATGGTTGTCTGAATTaGGTTTGGTTCAACAACTGG +
Preference number: 5 (lower is better)
Translates to: FEGFALPRTSLDLSKMVINGCLN*VWFNNW
Trigger: CCAGTTGTTGAACCAAACCAAATTCAGACAACCATT...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCATTAGTGTGTGGTaGACTTGGAAAGCCACAGCT +
Preference number: 5 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMLISVW*TWKATA
Trigger: AGCTGTGGCTTTCCAAGTCAACCACACACTAATGAG...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp TTTGAGGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAGGAGAAAGTTTGCTTaGTATTGGCTTCTTGACTTC +
Preference number: 5 (lower is better)
Translates to: FEGFALPRTSLDLSKMVIRRKFA*YWLLDF
Trigger: GAAGTCAAGAAGCCAATACAAAGCAAACTTTCTCCT...TATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCCTCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp CTAAAAGAAGTAAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGTTGGAGACATCGGGCTaGGGAGTTTCTGAAATGACT +
Preference number: 5 (lower is better)
Translates to: LKEVSILISGTKASVFILLETSG*GVSEMT
Trigger: AGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAA...CAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTTACTTCTTTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAGTTCTGTGGACAAATaGTCCTCAGGTTCTTTTGTT +
Preference number: 5 (lower is better)
Translates to: GICTAKNILGSFKDGDKLSSVDK*SSGSFV
Trigger: AACAAAAGAACCTGAGGACAATTTGTCCACAGAACT...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCTTGGGAGATCTCTGTaGCAACTGCACTTACTAACT +
Preference number: 5 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFLGRSL*QLHLLT
Trigger: AGTTAGTAAGTGCAGTTGCAACAGAGATCTCCCAAG...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp AGCATTTTAGATCCTTGTTTGGAGACATCGGGCTTGGGAGTTTCTGAAATGACTAGTCATATATTTATCTaGGGAGATCTCTGTTGCAAC +
Preference number: 5 (lower is better)
Translates to: SILDPCLETSGLGVSEMTSHIFI*GDLCCN
Trigger: GTTGCAACAGAGATCTCCCAAGATAAATATATGACT...AGTCATTTCAGAAACTCCCAAGCCCGATGTCTCCAAACAAGGATCTAAAATGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATCTCCCATTTTGTAGGTaGCCTGTTCACTCTGATGGT +
Preference number: 5 (lower is better)
Translates to: NLLKLISNFSKVSGYKINLPFCR*PVHSDG
Trigger: ACCATCAGAGTGAACAGGCAACCTACAAAATGGGAG...ATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS TCA 90 bp CTAGCTTCATCAGATTCAAGACTAGATTTATTTTTGCCAGCTCTTTaGAGGAACATACATATTGGGTCTGTCTTATGTTGCTGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: LASSDSRLDLFLPAL*RNIHIGSVLCCWQE
Trigger: TTCCTGCCAGCAACATAAGACAGACCCAATATGTATGTTCCTTCAAAGAGCTGGCAAAAATAAATCTAGTCTTGAATCTGATGAAGCTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CCA 90 bp ATTTCCTTTCATGGTCTGATCAAAACTACCAAAGTTAGATTCCCTTaGTCTGTGGTCTTGTACTTTGTTTCTAGTAGAACACGATGGCAT +
Preference number: 5 (lower is better)
Translates to: ISFHGLIKTTKVRFP*SVVLYFVSSRTRWH
Trigger: ATGCCATCGTGTTCTACTAGAAACAAAGTACAAGACCACAGACCAAGGGAATCTAACTTTGGTAGTTTTGATCAGACCATGAAAGGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS-3UTR CAA 90 bp CCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCACCTTGGTCTGTGGTCTaGTACTTTGTTTCTAGTAGA +
Preference number: 5 (lower is better)
Translates to: PRTSLDLSKMVINLTLFPPWSVV*YFVSSR
Trigger: TCTACTAGAAACAAAGTACAAGACCACAGACCAAGG...TGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp CTAAAAGAAGTAAGCATACTTATATCAGGTACAAAAGCTTCAGTGTTCATCCTGACAGTAGGTGATTCCTaGGTGGGTGGTACAAGTTTA +
Preference number: 5 (lower is better)
Translates to: LKEVSILISGTKASVFILTVGDS*VGGTSL
Trigger: TAAACTTGTACCACCCACCAAGGAATCACCTACTGT...CAGGATGAACACTGAAGCTTTTGTACCTGATATAAGTATGCTTACTTCTTTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp GGGATTTGCACTGCCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTCAGCTGTTACCAATTTaGACAGTTGAGATGCAATTT +
Preference number: 5 (lower is better)
Translates to: GICTAKNILGSFKDGDKLQLLPI*TVEMQF
Trigger: AAATTGCATCTCAACTGTCAAAATTGGTAACAGCTG...AAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGGCAGTGCAAATCCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATAAAGAGGAAGTCAAATaGTCCCTGTTTGCAGACGAC +
Preference number: 5 (lower is better)
Translates to: NLLKLISNFSKVSGYKINKEEVK*SLFADD
Trigger: GTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTT...ATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS TCA 90 bp TCCACAAATGACTCTAACATGTTTAAAACCGTTTCTACAATCTCTTaGACAATTTGGTTGCTGGAGCCCACAGAAATTTGGTCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: STNDSNMFKTVSTIS*TIWLLEPTEIWSFV
Trigger: GACAAAAGACCAAATTTCTGTGGGCTCCAGCAACCAAATTGTTCAAGAGATTGTAGAAACGGTTTTAAACATGTTAGAGTCATTTGTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS TCA 90 bp TGCTTATTTGCAAAAGGTAGACTTTCCGGAGCTTGTTGTATGCTGTaGGATAATTTGTCCATCAATGATTTAACCAAGCTGTGGGAAATA +
Preference number: 5 (lower is better)
Translates to: CLFAKGRLSGACCML*DNLSINDLTKLWEI
Trigger: TATTTCCCACAGCTTGGTTAAATCATTGATGGACAAATTATCTCACAGCATACAACAAGCTCCGGAAAGTCTACCTTTTGCAAATAAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS TCA 90 bp TGCTCTAATTCAGGAATCACATTAAAAGCATGTTCTTGGGCCTTTTaGACAATTCTATTAACGTCTAGCTCTCCAGAGAGATCAGCATTT +
Preference number: 5 (lower is better)
Translates to: CSNSGITLKACSWAF*TILLTSSSPERSAF
Trigger: AAATGCTGATCTCTCTGGAGAGCTAGACGTTAATAGAATTGTTCAAAAGGCCCAAGAACATGCTTTTAATGTGATTCCTGAATTAGAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS-3UTR CAA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCCAAGTAAAAACATGCTaGTTGTTTAGGAAGGGATCC +
Preference number: 5 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFQVKTC*LFRKGS
Trigger: GGATCCCTTCCTAAACAACAAGCATGTTTTTACTTG...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTCATCCCAATCAGCATTaGTCTCCTTCTCTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRHPNQH*SPSLLL
Trigger: CAAAAGAAGAGAAGGAGACAAATGCTGATTGGGATG...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTAAACCCTGAGCAAAAATaGTGCCATTTTTCCTTGAAT +
Preference number: 5 (lower is better)
Translates to: MGRKNQYRENGHTAQGNLNPEQK*CHFSLN
Trigger: ATTCAAGGAAAAATGGCACAATTTTTGCTCAGGGTT...TAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAAGATATGTTAATTGGCTaGCTTGTGGTGAACACTTTA +
Preference number: 5 (lower is better)
Translates to: QAFLYTNNRQTESQIMSEDMLIG*LVVNTL
Trigger: TAAAGTGTTCACCACAAGCAAGCCAATTAACATATC...TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCTGTCAATTTTGGCTTTaGTTGCCATTGCTTTTGGTG +
Preference number: 5 (lower is better)
Translates to: GRINIVKMAILPKVIYRFCQFWL*LPLLLV
Trigger: CACCAAAAGCAATGGCAACAAAAGCCAAAATTGACA...GAATCTATAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCTCCTTCACCCACTTTTaGATGGGGTTGTTTGTTTTT +
Preference number: 5 (lower is better)
Translates to: GRINIVKMAILPKVIYRFSFTHF*MGLFVF
Trigger: AAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGA...GAATCTATAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS TCA 90 bp ATGAAAAATGGTTTCATTATTTCCCTGTTCTCATTAGTGTGTGGTTaGCTTGGAAAGCCACAGCTGGATAGCACAGTATTGACAATATTT +
Preference number: 5 (lower is better)
Translates to: MKNGFIISLFSLVCG*LGKPQLDSTVLTIF
Trigger: AAATATTGTCAATACTGTGCTATCCAGCTGTGGCTTTCCAAGTCAACCACACACTAATGAGAACAGGGAAATAATGAAACCATTTTTCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS GCA 90 bp GTCTTTCTTCTCTATCCATTAGGAATAGGCGTTGTTCTTCTGCTGTaGGTTCAAGTTGTTCTAGTTTTCTACTTATCATATCCAAATATC +
Preference number: 5 (lower is better)
Translates to: VFLLYPLGIGVVLLL*VQVVLVFYLSYPNI
Trigger: GATATTTGGATATGATAAGTAGAAAACTAGAACAACTTGAACGCACAGCAGAAGAACAACGCCTATTCCTAATGGATAGAGAAGAAAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000429412.1
CDS GCA 90 bp AAGCAGACAGAAATGATGCTTCATGTGTGTCTCTGGAAATATTGGTaGTTTCATATTCCCAGCCTATCTTATTGCTTTTCTTATTTCCAT +
Preference number: 5 (lower is better)
Translates to: KQTEMMLHVCLWKYW*FHIPSLSYCFSYFH
Trigger: ATGGAAATAAGAAAAGCAATAAGATAGGCTGGGAATATGAAAGCACCAATATTTCCAGAGACACACATGAAGCATCATTTCTGTCTGCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CCA 90 bp CATGCATATATAAAGCAGACAGAAATGATGCTTCATGTGTGTCTCTaGAAATATTGGTGCTTTCATATTCCCAGCCTATCTTATTGCTTT +
Preference number: 5 (lower is better)
Translates to: HAYIKQTEMMLHVCL*KYWCFHIPSLSYCF
Trigger: AAAGCAATAAGATAGGCTGGGAATATGAAAGCACCAATATTTCCAGAGACACACATGAAGCATCATTTCTGTCTGCTTTATATATGCATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CCA 90 bp GGAGGTAAACACAGTCTTTCCTCAGTATTATCTATAATGCTAACTTaGGCTTTTGAGAATTCCCCTGTAATCAAATGTATGAGTTCTTCA +
Preference number: 5 (lower is better)
Translates to: GGKHSLSSVLSIMLT*AFENSPVIKCMSSS
Trigger: TGAAGAACTCATACATTTGATTACAGGGGAATTCTCAAAAGCCCAAGTTAGCATTATAGATAATACTGAGGAAAGACTGTGTTTACCTCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS-3UTR CAA 90 bp CCAAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCACATTTTCCTTGTCATTaGATTCTGTTTGCCACTTGT +
Preference number: 5 (lower is better)
Translates to: PRTSLDLSKMVINLTLFPHFPCH*ILFATC
Trigger: ACAAGTGGCAAACAGAATCAAATGACAAGGAAAATG...TGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTTGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTGCTGAGGCTATGCTaGTTTGGAAAACCATATTTA +
Preference number: 5 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMLLRLC*FGKPYL
Trigger: TAAATATGGTTTTCCAAACAAGCATAGCCTCAGCAG...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415915.5
CDS-3UTR CAA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGGACTTAGGAGAAAGTTaGCTTTGTATTGGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMDLGES*LCIGFL
Trigger: CAAGAAGCCAATACAAAGCAAACTTTCTCCTAAGTC...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTGACTTAGGAGAAAGTTaGCTTTGTATTGGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFDLGES*LCIGFL
Trigger: CAAGAAGCCAATACAAAGCAAACTTTCTCCTAAGTC...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000611759.1
CDS-3UTR CAA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTTCTGTTTCTATGCTGTaGTTCTTCTATCCTCTCTTC +
Preference number: 5 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRSVSML*FFYPLF
Trigger: GAAGAGAGGATAGAAGAACAACAGCATAGAAACAGA...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTTCTCCTTCTCTTCTTTaGAAGGATCCAAAAATGCCT +
Preference number: 5 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRSPSLL*KDPKMP
Trigger: AGGCATTTTTGGATCCTTCAAAAGAAGAGAAGGAGA...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp TCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGCTCTGGCTTTTGTTCTTCTCCCCTCATTGCTaGATGTTCGAATTCTTATTT +
Preference number: 5 (lower is better)
Translates to: SFKDGDKLNTVSMLWLLFFSPHC*MFEFLF
Trigger: AAATAAGAATTCGAACATCAAGCAATGAGGGGAGAA...GAACAAAAGCCAGAGCATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp AAGAACATCCTTGGATCTTTCAAAGATGGTGATAAACTTAACACTGTTTCCATGTGTCCTCAGGTTCTTTaGTTTTTGTGCTGGATATTG +
Preference number: 5 (lower is better)
Translates to: KNILGSFKDGDKLNTVSMCPQVL*FLCWIL
Trigger: CAATATCCAGCACAAAAACAAAAGAACCTGAGGACA...CATGGAAACAGTGTTAAGTTTATCACCATCTTTGAAAGATCCAAGGATGTTCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTTATACCTTAATAAAGTaGTGGTGTGGGAGAGAAGCT +
Preference number: 5 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRYTLIK*WCGREA
Trigger: AGCTTCTCTCCCACACCACAACTTTATTAAGGTATA...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATTCCCATTTGTCAATTTaGGCTTTTGTTGCCATTGCT +
Preference number: 5 (lower is better)
Translates to: NLLKLISNFSKVSGYKINSHLSI*AFVAIA
Trigger: AGCAATGGCAACAAAAGCCAAAATTGACAAATGGGA...ATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS-3UTR CAA 90 bp AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATTGTCAGATGAGTAGGTaGCGAAAATTTTCTCCCATT +
Preference number: 5 (lower is better)
Translates to: NLLKLISNFSKVSGYKINCQMSR*RKFSPI
Trigger: AATGGGAGAAAATTTTCGCAACCTACTCATCTGACA...ATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS GCA 90 bp CTAACATGTTTAAAACCGTTTCTACAATCTCTTGAACAATTTGGTTaGTGGAGCCCACAGAAATTTGGTCTTTTGTCTTTGTGTTATAGA +
Preference number: 5 (lower is better)
Translates to: LTCLKPFLQSLEQFG*WSPQKFGLLSLCYR
Trigger: TCTATAACACAAAGACAAAAGACCAAATTTCTGTGGGCTCCAGCAACCAAATTGTTCAAGAGATTGTAGAAACGGTTTTAAACATGTTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS CCA 90 bp ACATGTTTAAAACCGTTTCTACAATCTCTTGAACAATTTGGTTGCTaGAGCCCACAGAAATTTGGTCTTTTGTCTTTGTGTTATAGATTG +
Preference number: 5 (lower is better)
Translates to: TCLKPFLQSLEQFGC*SPQKFGLLSLCYRL
Trigger: CAATCTATAACACAAAGACAAAAGACCAAATTTCTGTGGGCTCCAGCAACCAAATTGTTCAAGAGATTGTAGAAACGGTTTTAAACATGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS-3UTR CAA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTTTTTCTGAAAGGATTTaGCATCCACTGGTTACACAA +
Preference number: 5 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFFSERI*HPLVTQ
Trigger: TTGTGTAACCAGTGGATGCAAAATCCTTTCAGAAAA...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
36% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp GCAAAAGTCTGTGTTAAAACAACTTCATCTTCATCAGAATCTCGTTCCTCTTTTATGTTCTTGGGCCTTTaGAACAATTCTATTAACGTC +
Preference number: 5 (lower is better)
Translates to: AKVCVKTTSSSSESRSSFMFLGL*NNSINV
Trigger: GACGTTAATAGAATTGTTCAAAAGGCCCAAGAACAT...AAAAGAGGAACGAGATTCTGATGAAGATGAAGTTGTTTTAACACAGACTTTTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000611759.1
CDS-3UTR CAA 90 bp TACAAACAAATAGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTACCATGTGTTCCATCTaGACCTCTGTATTTAAATGT +
Preference number: 5 (lower is better)
Translates to: YKQIEEHSMLMGRKNQYRTMCSI*TSVFKC
Trigger: ACATTTAAATACAGAGGTCAAGATGGAACACATGGT...ACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCTATTTGTTTGTA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429412.1
CDS TCA 72 bp GGGTGTCCGCGGCCAGGACGCTGGCGACCGTCTTGGTaGCGGCGACTTTGGCAGGCTTGGAGCAGGCGCCGA +
Preference number: 6 (lower is better)
Translates to: GCPRPGRWRPSW*RRLWQAWSRRR
Trigger: TCGGCGCCTGCTCCAAGCCTGCCAAAGTCGCCGTCACCAAGACGGTCGCCAGCGTCCTGGCCGCGGACACCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp TGCTGGGTGTCCGCGGCCAGGACGCTGGCGACCGTCTaGGTGACGGCGACTTTGGCAGGCTTGGAGCAGGCG +
Preference number: 6 (lower is better)
Translates to: CWVSAARTLATV*VTATLAGLEQA
Trigger: CGCCTGCTCCAAGCCTGCCAAAGTCGCCGTCACCAAGACGGTCGCCAGCGTCCTGGCCGCGGACACCCAGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp TCTCTGCACTGCTGGGTGTCCGCGGCCAGGACGCTGGCGACCGTCTaGGTGACGGCGACTTTGGCAGGCTTGGAGCAGGCGCCGAGGTAC +
Preference number: 6 (lower is better)
Translates to: SLHCWVSAARTLATV*VTATLAGLEQAPRY
Trigger: GTACCTCGGCGCCTGCTCCAAGCCTGCCAAAGTCGCCGTCACCAAGACGGTCGCCAGCGTCCTGGCCGCGGACACCCAGCAGTGCAGAGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CCA 72 bp GCAAAGTGGGTTTTGTGCACGCCGTCTCTGCACTGCTaGGTGTCCGCGGCCAGGACGCTGGCGACCGTCTTG +
Preference number: 6 (lower is better)
Translates to: AKWVLCTPSLHC*VSAARTLATVL
Trigger: CAAGACGGTCGCCAGCGTCCTGGCCGCGGACACCCAGCAGTGCAGAGACGGCGTGCACAAAACCCACTTTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp CCAGCTGACATGATGTGTGACAACCCAATGGCAGTCTaGGATCTGCTGTCTTTTAGGGTCTTCTCTCCAGGA +
Preference number: 6 (lower is better)
Translates to: PADMMCDNPMAV*DLLSFRVFSPG
Trigger: TCCTGGAGAGAAGACCCTAAAAGACAGCAGATCCAAGACTGCCATTGGGTTGTCACACATCATGTCAGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS CAA 90 bp TTGGCATCTCCAGCTGACATGATGTGTGACAACCCAATGGCAGTCTaGGATCTGCTGTCTTTTAGGGTCTTCTCTCCAGGACCTAACTTG +
Preference number: 6 (lower is better)
Translates to: LASPADMMCDNPMAV*DLLSFRVFSPGPNL
Trigger: CAAGTTAGGTCCTGGAGAGAAGACCCTAAAAGACAGCAGATCCAAGACTGCCATTGGGTTGTCACACATCATGTCAGCTGGAGATGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS CAA 72 bp AATCTGAGTGGTGTTCCTCATCCCTACACGTTTGTGTaGGAGAGTCTCTTCTCCCCTCATTGCTTGATGTTC +
Preference number: 6 (lower is better)
Translates to: NLSGVPHPYTFV*ESLFSPHCLMF
Trigger: GAACATCAAGCAATGAGGGGAGAAGAGACTCTCCAACACAAACGTGTAGGGATGAGGAACACCACTCAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS TCA 72 bp TTGTGTCCAGTAAATTTTTGGCATCTCCAGCTGACATaGTGTGTGACAACCCAATGGCAGTCTTGGATCTGC +
Preference number: 6 (lower is better)
Translates to: LCPVNFWHLQLT*CVTTQWQSWIC
Trigger: GCAGATCCAAGACTGCCATTGGGTTGTCACACATCATGTCAGCTGGAGATGCCAAAAATTTACTGGACACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS CCA 72 bp CTTGTCAGCAACGCTGAATCTAGACTGAAAAGTACATaGATTTTCATCCAAAGCCGTGACAGAGGACTTTCC +
Preference number: 6 (lower is better)
Translates to: LVSNAESRLKST*IFIQSRDRGLS
Trigger: GGAAAGTCCTCTGTCACGGCTTTGGATGAAAATCCATGTACTTTTCAGTCTAGATTCAGCGTTGCTGACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp CATGTTCATAATCTGAGTGGTGTTCCTCATCCCTACACGTTTGTGTaGGAGAGTCTCTTCTCCCCTCATTGCTTGATGTTCGAATTCTTA +
Preference number: 6 (lower is better)
Translates to: HVHNLSGVPHPYTFV*ESLFSPHCLMFEFL
Trigger: TAAGAATTCGAACATCAAGCAATGAGGGGAGAAGAGACTCTCCAACACAAACGTGTAGGGATGAGGAACACCACTCAGATTATGAACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS CCA 72 bp ATCATATCCAAATATCTATGCCTCATCAGCCGCTCCTaGTCCTTAATAGATTCAGTGCCCTCCTTTAACAAC +
Preference number: 6 (lower is better)
Translates to: IISKYLCLISRS*SLIDSVPSFNN
Trigger: GTTGTTAAAGGAGGGCACTGAATCTATTAAGGACCAGGAGCGGCTGATGAGGCATAGATATTTGGATATGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp AGTTCTGAAGTGGGCAATTTTGTGTCCAGTAAATTTTaGGCATCTCCAGCTGACATGATGTGTGACAACCCA +
Preference number: 6 (lower is better)
Translates to: SSEVGNFVSSKF*ASPADMMCDNP
Trigger: TGGGTTGTCACACATCATGTCAGCTGGAGATGCCAAAAATTTACTGGACACAAAATTGCCCACTTCAGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS CAA 72 bp GTTGCATTATCAGCTACAGGCACAGTAGGTGATTCCTaGGTGGGTGGTACAAGTTTAATCTTACTTTTGGAG +
Preference number: 6 (lower is better)
Translates to: VALSATGTVGDS*VGGTSLILLLE
Trigger: CTCCAAAAGTAAGATTAAACTTGTACCACCCACCAAGGAATCACCTACTGTGCCTGTAGCTGATAATGCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS CAA 90 bp TCCTCATCCCTACACGTTTGTGTTGGAGAGTCTCTTCTCCCCTCATaGCTTGATGTTCGAATTCTTATTTCCAAAGTATCTGTTGTAGTC +
Preference number: 6 (lower is better)
Translates to: SSSLHVCVGESLLPS*LDVRILISKVSVVV
Trigger: GACTACAACAGATACTTTGGAAATAAGAATTCGAACATCAAGCAATGAGGGGAGAAGAGACTCTCCAACACAAACGTGTAGGGATGAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS CAA 72 bp AGGATCCATCATTTTATCCATAAATTGAACAGATGTTaGGGGAGTTGGCTCATCAACATTGTGAGGCATGCC +
Preference number: 6 (lower is better)
Translates to: RIHHFIHKLNRC*GSWLINIVRHA
Trigger: GGCATGCCTCACAATGTTGATGAGCCAACTCCCCAAACATCTGTTCAATTTATGGATAAAATGATGGATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp TGCAAAACTTTGCTGTACACCATGTCAACAATTGTTTaGACTACATCCCTCTCCACTGGAGGTAAACACAGT +
Preference number: 6 (lower is better)
Translates to: CKTLLYTMSTIV*TTSLSTGGKHS
Trigger: ACTGTGTTTACCTCCAGTGGAGAGGGATGTAGTCAAAACAATTGTTGACATGGTGTACAGCAAAGTTTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp TCAAAACTACCAAAGTTAGATTCCCTTGGTCTGTGGTCTTGTACTTaGTTTCTAGTAGAACACGATGGCATAGTTTCTGAATCAGGCCTT +
Preference number: 6 (lower is better)
Translates to: SKLPKLDSLGLWSCT*FLVEHDGIVSESGL
Trigger: AAGGCCTGATTCAGAAACTATGCCATCGTGTTCTACTAGAAACAAAGTACAAGACCACAGACCAAGGGAATCTAACTTTGGTAGTTTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS CAA 90 bp AGTTTCATTAAGTGGAGGCAAATGGCCTGTGACTTCCCTTACTCTTaGATACAACTTATTCAAAAGTTCTTCCACTGCAATGAGCAGTTC +
Preference number: 6 (lower is better)
Translates to: SFIKWRQMACDFPYS*IQLIQKFFHCNEQF
Trigger: GAACTGCTCATTGCAGTGGAAGAACTTTTGAATAAGTTGTATCAAAGAGTAAGGGAAGTCACAGGCCATTTGCCTCCACTTAATGAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp TCATATTCTTGCAAAACTTTGCTGTACACCATGTCAACAATTGTTTaGACTACATCCCTCTCCACTGGAGGTAAACACAGTCTTTCCTCA +
Preference number: 6 (lower is better)
Translates to: SYSCKTLLYTMSTIV*TTSLSTGGKHSLSS
Trigger: TGAGGAAAGACTGTGTTTACCTCCAGTGGAGAGGGATGTAGTCAAAACAATTGTTGACATGGTGTACAGCAAAGTTTTGCAAGAATATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS TCA 72 bp GCAAAAGGTAGACTTTCCGGAGCTTGTTGTATGCTGTaGGATAATTTGTCCATCAATGATTTAACCAAGCTG +
Preference number: 6 (lower is better)
Translates to: AKGRLSGACCML*DNLSINDLTKL
Trigger: CAGCTTGGTTAAATCATTGATGGACAAATTATCTCACAGCATACAACAAGCTCCGGAAAGTCTACCTTTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS TCA 72 bp CGTTTGTGTTGGAGAGTCTCTTCTCCCCTCATTGCTTaGTGTTCGAATTCTTATTTCCAAAGTATCTGTTGT +
Preference number: 6 (lower is better)
Translates to: RLCWRVSSPLIA*CSNSYFQSICC
Trigger: ACAACAGATACTTTGGAAATAAGAATTCGAACATCAAGCAATGAGGGGAGAAGAGACTCTCCAACACAAACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS GCA 72 bp TTTCTGAAACAAGAACTGAAGCTTCACTGCCAGTTTTaGTGTCTAAGTGACCAAAAGGAACGGAAGATATGT +
Preference number: 6 (lower is better)
Translates to: FLKQELKLHCQF*CLSDQKERKIC
Trigger: ACATATCTTCCGTTCCTTTTGGTCACTTAGACAGCAAAACTGGCAGTGAAGCTTCAGTTCTTGTTTCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS GCA 72 bp TACACGTTTGTGTTGGAGAGTCTCTTCTCCCCTCATTaGTTGATGTTCGAATTCTTATTTCCAAAGTATCTG +
Preference number: 6 (lower is better)
Translates to: YTFVLESLFSPH*LMFEFLFPKYL
Trigger: CAGATACTTTGGAAATAAGAATTCGAACATCAAGCAATGAGGGGAGAAGAGACTCTCCAACACAAACGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS CCA 72 bp CTTTATTGTCCTCCTGAACCCTTCTGGAAACTATGCTaGAGATTATTTTGGTGGATTTGGCCATTTTCTCAA +
Preference number: 6 (lower is better)
Translates to: LYCPPEPFWKLC*RLFWWIWPFSQ
Trigger: TTGAGAAAATGGCCAAATCCACCAAAATAATCTCCAGCATAGTTTCCAGAAGGGTTCAGGAGGACAATAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CCA 72 bp CACAGAAGAGGATTTTACTGCACAATGCTTGTTAAATaGTGCTTGTATTTTGGAGCTAACCACACTGGGATT +
Preference number: 6 (lower is better)
Translates to: HRRGFYCTMLVK*CLYFGANHTGI
Trigger: AATCCCAGTGTGGTTAGCTCCAAAATACAAGCACCATTTAACAAGCATTGTGCAGTAAAATCCTCTTCTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CCA 72 bp TCCAGGTTTACTTTCTCGTTGGTTTTGAGGATCATCTaGTTTACTGGGTTCACTTTTAATCTCCTCTCTTAC +
Preference number: 6 (lower is better)
Translates to: SRFTFSLVLRII*FTGFTFNLLSY
Trigger: GTAAGAGAGGAGATTAAAAGTGAACCCAGTAAACCAGATGATCCTCAAAACCAACGAGAAAGTAAACCTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS CAA 72 bp TATTTGGCAAAATGCTTTGTACATCAACACTGTCAGTaGCAGACTTTGGCTTACGAGAAGAGAGTGAAATGC +
Preference number: 6 (lower is better)
Translates to: YLAKCFVHQHCQ*QTLAYEKRVKC
Trigger: GCATTTCACTCTCTTCTCGTAAGCCAAAGTCTGCAACTGACAGTGTTGATGTACAAAGCATTTTGCCAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp AAGTGGAGGCAAATGGCCTGTGACTTCCCTTACTCTTaGATACAACTTATTCAAAAGTTCTTCCACTGCAAT +
Preference number: 6 (lower is better)
Translates to: KWRQMACDFPYS*IQLIQKFFHCN
Trigger: ATTGCAGTGGAAGAACTTTTGAATAAGTTGTATCAAAGAGTAAGGGAAGTCACAGGCCATTTGCCTCCACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp AATTGCCAGTCTCTGGGGCTTGCCTGTCTATTGATTTaGTTGCAAAGGGGTACACTATTATTTCTATGCATA +
Preference number: 6 (lower is better)
Translates to: NCQSLGLACLLI*LQRGTLLFLCI
Trigger: TATGCATAGAAATAATAGTGTACCCCTTTGCAACAAAATCAATAGACAGGCAAGCCCCAGAGACTGGCAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp ACGTTTGTGTTGGAGAGTCTCTTCTCCCCTCATTGCTaGATGTTCGAATTCTTATTTCCAAAGTATCTGTTG +
Preference number: 6 (lower is better)
Translates to: TFVLESLFSPHC*MFEFLFPKYLL
Trigger: CAACAGATACTTTGGAAATAAGAATTCGAACATCAAGCAATGAGGGGAGAAGAGACTCTCCAACACAAACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS CAA 72 bp CTACACGTTTGTGTTGGAGAGTCTCTTCTCCCCTCATaGCTTGATGTTCGAATTCTTATTTCCAAAGTATCT +
Preference number: 6 (lower is better)
Translates to: LHVCVGESLLPS*LDVRILISKVS
Trigger: AGATACTTTGGAAATAAGAATTCGAACATCAAGCAATGAGGGGAGAAGAGACTCTCCAACACAAACGTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS CAA 90 bp ACTAGCTTCATCAGATTCAAGACTAGATTTATTTTTGCCAGCTCTTaGAAGGAACATACATATTGGGTCTGTCTTATGTTGCTGGCAGGA +
Preference number: 6 (lower is better)
Translates to: TSFIRFKTRFIFASS*KEHTYWVCLMLLAG
Trigger: TCCTGCCAGCAACATAAGACAGACCCAATATGTATGTTCCTTCAAAGAGCTGGCAAAAATAAATCTAGTCTTGAATCTGATGAAGCTAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp TATCTTGCCTATTTGGCAAAATGCTTTGTACATCAACACTGTCAGTaGCAGACTTTGGCTTACGAGAAGAGAGTGAAATGCTTCTTTGAT +
Preference number: 6 (lower is better)
Translates to: YLAYLAKCFVHQHCQ*QTLAYEKRVKCFFD
Trigger: ATCAAAGAAGCATTTCACTCTCTTCTCGTAAGCCAAAGTCTGCAACTGACAGTGTTGATGTACAAAGCATTTTGCCAAATAGGCAAGATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp GAAGAGGATTTTACTGCACAATGCTTGTTAAATGGTGCTTGTATTTaGGAGCTAACCACACTGGGATTATTCAGGGATACTGTCAAAGAA +
Preference number: 6 (lower is better)
Translates to: EEDFTAQCLLNGACI*ELTTLGLFRDTVKE
Trigger: TTCTTTGACAGTATCCCTGAATAATCCCAGTGTGGTTAGCTCCAAAATACAAGCACCATTTAACAAGCATTGTGCAGTAAAATCCTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS TCA 72 bp GACTCTAACATGTTTAAAACCGTTTCTACAATCTCTTaGACAATTTGGTTGCTGGAGCCCACAGAAATTTGG +
Preference number: 6 (lower is better)
Translates to: DSNMFKTVSTIS*TIWLLEPTEIW
Trigger: CCAAATTTCTGTGGGCTCCAGCAACCAAATTGTTCAAGAGATTGTAGAAACGGTTTTAAACATGTTAGAGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS TCA 72 bp TCAGGAATCACATTAAAAGCATGTTCTTGGGCCTTTTaGACAATTCTATTAACGTCTAGCTCTCCAGAGAGA +
Preference number: 6 (lower is better)
Translates to: SGITLKACSWAF*TILLTSSSPER
Trigger: TCTCTCTGGAGAGCTAGACGTTAATAGAATTGTTCAAAAGGCCCAAGAACATGCTTTTAATGTGATTCCTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000611759.1
CDS CAA 72 bp AAAACTACCAAAGTTAGATTCCCTTGGTCTGTGGTCTaGTACTTTGTTTCTAGTAGAACACGATGGCATAGT +
Preference number: 6 (lower is better)
Translates to: KTTKVRFPWSVV*YFVSSRTRWHS
Trigger: ACTATGCCATCGTGTTCTACTAGAAACAAAGTACAAGACCACAGACCAAGGGAATCTAACTTTGGTAGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS CAA 72 bp AAATGCTTTGTACATCAACACTGTCAGTTGCAGACTTaGGCTTACGAGAAGAGAGTGAAATGCTTCTTTGAT +
Preference number: 6 (lower is better)
Translates to: KCFVHQHCQLQT*AYEKRVKCFFD
Trigger: ATCAAAGAAGCATTTCACTCTCTTCTCGTAAGCCAAAGTCTGCAACTGACAGTGTTGATGTACAAAGCATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp GACAGAAATGATGCTTCATGTGTGTCTCTGGAAATATaGGTGCTTTCATATTCCCAGCCTATCTTATTGCTT +
Preference number: 6 (lower is better)
Translates to: DRNDASCVSLEI*VLSYSQPILLL
Trigger: AAGCAATAAGATAGGCTGGGAATATGAAAGCACCAATATTTCCAGAGACACACATGAAGCATCATTTCTGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp TTTACTGCACAATGCTTGTTAAATGGTGCTTGTATTTaGGAGCTAACCACACTGGGATTATTCAGGGATACT +
Preference number: 6 (lower is better)
Translates to: FTAQCLLNGACI*ELTTLGLFRDT
Trigger: AGTATCCCTGAATAATCCCAGTGTGGTTAGCTCCAAAATACAAGCACCATTTAACAAGCATTGTGCAGTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp AAAGGTGACACAGAAGAGGATTTTACTGCACAATGCTaGTTAAATGGTGCTTGTATTTTGGAGCTAACCACA +
Preference number: 6 (lower is better)
Translates to: KGDTEEDFTAQC*LNGACILELTT
Trigger: TGTGGTTAGCTCCAAAATACAAGCACCATTTAACAAGCATTGTGCAGTAAAATCCTCTTCTGTGTCACCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp TATTTGGCAAAATGCTTTGTACATCAACACTGTCAGTTGCAGACTTaGGCTTACGAGAAGAGAGTGAAATGCTTCTTTGATGTGCATTTT +
Preference number: 6 (lower is better)
Translates to: YLAKCFVHQHCQLQT*AYEKRVKCFFDVHF
Trigger: AAAATGCACATCAAAGAAGCATTTCACTCTCTTCTCGTAAGCCAAAGTCTGCAACTGACAGTGTTGATGTACAAAGCATTTTGCCAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS GCA 72 bp CTCTATCCATTAGGAATAGGCGTTGTTCTTCTGCTGTaGGTTCAAGTTGTTCTAGTTTTCTACTTATCATAT +
Preference number: 6 (lower is better)
Translates to: LYPLGIGVVLLL*VQVVLVFYLSY
Trigger: ATATGATAAGTAGAAAACTAGAACAACTTGAACGCACAGCAGAAGAACAACGCCTATTCCTAATGGATAGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000424728.6
ENST00000429412.1
CDS GCA 72 bp GAAATGATGCTTCATGTGTGTCTCTGGAAATATTGGTaGTTTCATATTCCCAGCCTATCTTATTGCTTTTCT +
Preference number: 6 (lower is better)
Translates to: EMMLHVCLWKYW*FHIPSLSYCFS
Trigger: AGAAAAGCAATAAGATAGGCTGGGAATATGAAAGCACCAATATTTCCAGAGACACACATGAAGCATCATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS GCA 72 bp AGAAGAGGATTTTACTGCACAATGCTTGTTAAATGGTaGTTGTATTTTGGAGCTAACCACACTGGGATTATT +
Preference number: 6 (lower is better)
Translates to: RRGFYCTMLVKW*LYFGANHTGII
Trigger: AATAATCCCAGTGTGGTTAGCTCCAAAATACAAGCACCATTTAACAAGCATTGTGCAGTAAAATCCTCTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp AATATGCCATTTGTTATTTGTTCTGCTATTGAGGCATaGTCGTATACCGGATTATTACCACAGGCCACTTTT +
Preference number: 6 (lower is better)
Translates to: NMPFVICSAIEA*SYTGLLPQATF
Trigger: AAAAGTGGCCTGTGGTAATAATCCGGTATACGACAATGCCTCAATAGCAGAACAAATAACAAATGGCATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp ATCTCTAACAATATGCCATTTGTTATTTGTTCTGCTATTGAGGCATaGTCGTATACCGGATTATTACCACAGGCCACTTTTAATTCATAC +
Preference number: 6 (lower is better)
Translates to: ISNNMPFVICSAIEA*SYTGLLPQATFNSY
Trigger: GTATGAATTAAAAGTGGCCTGTGGTAATAATCCGGTATACGACAATGCCTCAATAGCAGAACAAATAACAAATGGCATATTGTTAGAGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 90 bp AGTCTAAAATCTCTAACAATATGCCATTTGTTATTTGTTCTGCTATaGAGGCATTGTCGTATACCGGATTATTACCACAGGCCACTTTTA +
Preference number: 6 (lower is better)
Translates to: SLKSLTICHLLFVLL*RHCRIPDYYHRPLL
Trigger: TAAAAGTGGCCTGTGGTAATAATCCGGTATACGACAATGCCTCAATAGCAGAACAAATAACAAATGGCATATTGTTAGAGATTTTAGACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS TCA 72 bp GCATCTAAAATTAACTTGACTACATACTTAAGTATTTaGGTCTCAGGTGGTGGGTTTTCTACACTTGTCTTC +
Preference number: 6 (lower is better)
Translates to: ASKINLTTYLSI*VSGGGFSTLVF
Trigger: GAAGACAAGTGTAGAAAACCCACCACCTGAGACTCAAATACTTAAGTATGTAGTCAAGTTAATTTTAGATGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS TCA 72 bp CTGCTTATTTGTGTAAAGGTGTTTTGTGGTAGGTGTTaGACCCTTTGGGTGATATTATCTGGATTTAGAAAT +
Preference number: 6 (lower is better)
Translates to: LLICVKVFCGRC*TLWVILSGFRN
Trigger: ATTTCTAAATCCAGATAATATCACCCAAAGGGTTCAACACCTACCACAAAACACCTTTACACAAATAAGCAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CCA 72 bp CACAGTCTTTCCTCAGTATTATCTATAATGCTAACTTaGGCTTTTGAGAATTCCCCTGTAATCAAATGTATG +
Preference number: 6 (lower is better)
Translates to: HSLSSVLSIMLT*AFENSPVIKCM
Trigger: CATACATTTGATTACAGGGGAATTCTCAAAAGCCCAAGTTAGCATTATAGATAATACTGAGGAAAGACTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS TCA 72 bp GGTCTTTTGTCTTTGTGTTATAGATTGGTAAACTGCTaGGGCTATGCTTGTTTGGAAAACCATATTTACTTT +
Preference number: 6 (lower is better)
Translates to: GLLSLCYRLVNC*GYACLENHIYF
Trigger: AAAGTAAATATGGTTTTCCAAACAAGCATAGCCTCAGCAGTTTACCAATCTATAACACAAAGACAAAAGACC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000415915.5
ENST00000424728.6
CDS TCA 72 bp TTAACACAGAATCTGTTATTTCTTGAGCCACTGTACTaGTTTCTGAAACAGAAAACATCTGGTCTATCCATT +
Preference number: 6 (lower is better)
Translates to: LTQNLLFLEPLY*FLKQKTSGLSI
Trigger: AATGGATAGACCAGATGTTTTCTGTTTCAGAAATCAGTACAGTGGCTCAAGAAATAACAGATTCTGTGTTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS GCA 72 bp CATTTTGTTCACATTCAAGAACAACATTTTTACAGGTaGACGTGTATGAGTACAAACACAGAGTGTACATAT +
Preference number: 6 (lower is better)
Translates to: HFVHIQEQHFYR*TCMSTNTECTY
Trigger: ATATGTACACTCTGTGTTTGTACTCATACACGTGCACCTGTAAAAATGTTGTTCTTGAATGTGAACAAAATG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000469367.1
CDS CAA 72 bp ATCAGATTCAAGACTAGATTTATTTTTGCCAGCTCTTaGAAGGAACATACATATTGGGTCTGTCTTATGTTG +
Preference number: 6 (lower is better)
Translates to: IRFKTRFIFASS*KEHTYWVCLML
Trigger: CAACATAAGACAGACCCAATATGTATGTTCCTTCAAAGAGCTGGCAAAAATAAATCTAGTCTTGAATCTGAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp CGTAGAACCAAGTCAACTATGTTTTCTGAAAGGATTTaGCATCCACTGGTTACACAATTTTGTATAATCTCT +
Preference number: 6 (lower is better)
Translates to: RRTKSTMFSERI*HPLVTQFCIIS
Trigger: AGAGATTATACAAAATTGTGTAACCAGTGGATGCAAAATCCTTTCAGAAAACATAGTTGACTTGGTTCTACG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000424728.6
CDS CAA 72 bp GGTAGAACCAAGTCAACTATGTTTTCTGAAAGGATTTaGCATCCACTGGTTACACAATTTTGTATAATCTCT +
Preference number: 6 (lower is better)
Translates to: GRTKSTMFSERI*HPLVTQFCIIS
Trigger: AGAGATTATACAAAATTGTGTAACCAGTGGATGCAAAATCCTTTCAGAAAACATAGTTGACTTGGTTCTACC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000611759.1