RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FOXN2 (Homo sapiens)

Ensembl gene IDs: ENSG00000170802

Ensembl transcript IDs: ENST00000340553.8, ENST00000413569.5, ENST00000616844.1

Found 173 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp AATGGTCTTTACAGCTTTGTGAAGTATTCACATCTGTTGCTTAAATaGCTGGCAAAGGCCTCCTGGTCTACCAAGACATATACATTCCCT +
Preference number: 2 (lower is better)
Translates to: NGLYSFVKYSHLLLK*LAKASWSTKTYTFP
Trigger: AGGGAATGTATATGTCTTGGTAGACCAGGAGGCCTTTGCCAGCAATTTAAGCAACAGATGTGAATACTTCACAAAGCTGTAAAGACCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR TCA 90 bp AATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAACACATCATGTATTTCTaGTCAGGCATGATCCTAACA +
Preference number: 2 (lower is better)
Translates to: NLFLMDQWHYRLLHCLLKHIMYF*SGMILT
Trigger: TGTTAGGATCATGCCTGATCAGAAATACATGATGTG...TTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR TCA 90 bp GAATTTCAGCAGAACAAAATAAACTGGTGCCAGATCACTGAAACACTGTTCCTAGCTATGCAGGATCTCTaGAGTAAAAACACTTCAAAG +
Preference number: 2 (lower is better)
Translates to: EFQQNKINWCQITETLFLAMQDL*SKNTSK
Trigger: CTTTGAAGTGTTTTTACTTCAGAGATCCTGCATAGC...TAGGAACAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTTCTGCTGAAATTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR GCA 90 bp ACACACTTAATTGGCTATATCCTCTCACTGGATAACTTATACTCAACAAAGGCACTTATGTTACCGGATTaGGTGTCAGGAGAGAAGTAT +
Preference number: 2 (lower is better)
Translates to: THLIGYILSLDNLYSTKALMLPD*VSGEKY
Trigger: ATACTTCTCTCCTGACACGCAATCCGGTAACATAAG...TGCCTTTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGCCAATTAAGTGTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR GCA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCAAAGGCCCCAATAAATaGTATGCAGGATCTCTGAAG +
Preference number: 2 (lower is better)
Translates to: KITLKIPIRAGTNSASLSKGPNK*YAGSLK
Trigger: CTTCAGAGATCCTGCATAGCATTTATTGGGGCCTTT...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR TCA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCCAGGTAGCACATTTGTaGTACAGAATTTCAGCAGAA +
Preference number: 2 (lower is better)
Translates to: KITLKIPIRAGTNSASLSQVAHL*YRISAE
Trigger: TTCTGCTGAAATTCTGTATCACAAATGTGCTACCTG...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR GCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTCCTGTTAGCTTTCAGTaGACAAGTGTTTATCATCCT +
Preference number: 2 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCPVSFQ*TSVYHP
Trigger: AGGATGATAAACACTTGTGCACTGAAAGCTAACAGG...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR TCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTAATCACAGAAACAGCTaGAAGCAAATCAACATCATG +
Preference number: 2 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCNHRNS*KQINIM
Trigger: CATGATGTTGATTTGCTTTCAGCTGTTTCTGTGATT...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR CCA 90 bp AATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAGCTATATCCTCTCACTaGATAACTTATACTCAACAA +
Preference number: 2 (lower is better)
Translates to: NLFLMDQWHYRLLHCLLKAISSH*ITYTQQ
Trigger: TTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGC...TTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR CCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTTTTCTCATGGATCAATaGCACTATAGGTTGTTACAC +
Preference number: 2 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCFLMDQ*HYRLLH
Trigger: GTGTAACAACCTATAGTGCCATTGATCCATGAGAAA...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR CAA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCCAATGGCACTATAGGTaGTTACACTGCCTCCTCAAA +
Preference number: 3 (lower is better)
Translates to: KITLKIPIRAGTNSASLSQWHYR*LHCLLK
Trigger: TTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTG...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR TCA 72 bp ATTTCAGCAGAACAAAATAAACTGGTGCCAGATCACTaGAACACTGTTCCTAAGGTCTATACAGAGGCTATG +
Preference number: 3 (lower is better)
Translates to: ISAEQNKLVPDH*NTVPKVYTEAM
Trigger: CATAGCCTCTGTATAGACCTTAGGAACAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTTCTGCTGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR CAA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCGAATTGGGAGTGTTCTaGGATGAAATGACACCACAA +
Preference number: 3 (lower is better)
Translates to: KITLKIPIRAGTNSASLSELGVF*DEMTPQ
Trigger: TTGTGGTGTCATTTCATCCAAGAACACTCCCAATTC...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR-3UTR CAA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAACAGAAGAAAGGATTTTaGTCCCACAAGTTTAAGACA +
Preference number: 3 (lower is better)
Translates to: IFFSWINGTIGCYTASSKQKKGF*SHKFKT
Trigger: TGTCTTAAACTTGTGGGACAAAAATCCTTTCTTCTG...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000340553.8
3UTR GCA 72 bp TTTCTCATGGATCAATGGCACTATAGGTTGTTACACTaGCTCCTCAAAAAGGTGTATTGCATAAGATCAAAT +
Preference number: 3 (lower is better)
Translates to: FLMDQWHYRLLH*LLKKVYCIRSN
Trigger: ATTTGATCTTATGCAATACACCTTTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTGAGTGGCCTTCGGCCTaGCAGCATCAACAGCTTCAG +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCEWPSA*QHQQLQ
Trigger: CTGAAGCTGTTGATGCTGCCAGGCCGAAGGCCACTC...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCACCGCAGCTGTTCCCTaGAGCTTCCAGCAGTCGCCT +
Preference number: 4 (lower is better)
Translates to: KITLKIPIRAGTNSASLSTAAVP*SFQQSP
Trigger: AGGCGACTGCTGGAAGCTGCAGGGAACAGCTGCGGT...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTCACGCTAGACCTGGATaGACAACGCTGTGCTGCCAT +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCHARPG*TTLCCH
Trigger: ATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTG...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp AATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAGAGTGGCCTTCGGCCTaGCAGCATCAACAGCTTCAG +
Preference number: 4 (lower is better)
Translates to: NLFLMDQWHYRLLHCLLKEWPSA*QHQQLQ
Trigger: CTGAAGCTGTTGATGCTGCCAGGCCGAAGGCCACTC...TTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTCACTGTCCACTAGAGTaGCCTTCGGCCTGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLHCPLE*PSAWQH
Trigger: ATGCTGCCAGGCCGAAGGCCACTCTAGTGGACAGTG...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTCGAATTCCAGCAAGGTaGAGCAGAGATCCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCRIPAR*SRDPAA
Trigger: GGCAGCTGGATCTCTGCTCCACCTTGCTGGAATTCG...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTGGGGAAGACACAATATaGCAGAGCACCGCAGCTGTT +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCGEDTI*QSTAAV
Trigger: AACAGCTGCGGTGCTCTGCCATATTGTGTCTTCCCC...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAACGAATTCCAGCAAGGTaGAGCAGAGATCCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: IFFSWINGTIGCYTASSKRIPAR*SRDPAA
Trigger: GGCAGCTGGATCTCTGCTCCACCTTGCTGGAATTCG...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGGATGCACAACGCTGTaGTGCCATGCTACTTGCACT +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLGCTTL*CHATCT
Trigger: AGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCC...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAACACGCTAGACCTGGATaGACAACGCTGTGCTGCCAT +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEHARPG*TTLCCH
Trigger: ATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTG...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAATTTTGCACAAGGCTGTaGTGCATAGCCACTGTCTCC +
Preference number: 4 (lower is better)
Translates to: IFFSWINGTIGCYTASSKFCTRL*CIATVS
Trigger: GGAGACAGTGGCTATGCATCACAGCCTTGTGCAAAA...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp GAATTTCAGCAGAACAAAATAAACTGGTGCCAGATCACTGAAACACTGTTCCTACTGGTGCCAGATCACTaGAACACTGTTCCTAAGGTC +
Preference number: 4 (lower is better)
Translates to: EFQQNKINWCQITETLFLLVPDH*NTVPKV
Trigger: GACCTTAGGAACAGTGTTTCAGTGATCTGGCACCAG...TAGGAACAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTTCTGCTGAAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGGATGCACAACGCTGTaGTGCCATGCTACTTGCACT +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKGCTTL*CHATCT
Trigger: AGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCC...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCGAGCAGAGATCCAGCTaGCTCTTTGAGCTCCTCATC +
Preference number: 4 (lower is better)
Translates to: KITLKIPIRAGTNSASLSEQRSS*LFELLI
Trigger: GATGAGGAGCTCAAAGAGGCAGCTGGATCTCTGCTC...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTAGCCCTCTGCATCTGTaGGTTCTGTTATCCATGGCT +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLSPLHL*VLLSMA
Trigger: AGCCATGGATAACAGAACCCACAGATGCAGAGGGCT...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp GAATTTCAGCAGAACAAAATAAACTGGTGCCAGATCACTGAAACACTGTTCCTAGTTCTGGTAGCAAGCTaGTCCAAAGGATGGCACATC +
Preference number: 4 (lower is better)
Translates to: EFQQNKINWCQITETLFLVLVAS*SKGWHI
Trigger: GATGTGCCATCCTTTGGACCAGCTTGCTACCAGAAC...TAGGAACAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTTCTGCTGAAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTTCTGGTAGCAAGCTaGTCCAAAGGATGGCACATC +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLVLVAS*SKGWHI
Trigger: GATGTGCCATCCTTTGGACCAGCTTGCTACCAGAAC...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
3UTR CAA 72 bp AATGGTCTTTACAGCTTTGTGAAGTATTCACATCTGTaGCTTAAATTGCTGGCAAAGGCCTCCTGGTCTACC +
Preference number: 4 (lower is better)
Translates to: NGLYSFVKYSHL*LKLLAKASWST
Trigger: GGTAGACCAGGAGGCCTTTGCCAGCAATTTAAGCAACAGATGTGAATACTTCACAAAGCTGTAAAGACCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATTTTGCACAAGGCTGTaGTGCATAGCCACTGTCTCC +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEFCTRL*CIATVS
Trigger: GGAGACAGTGGCTATGCATCACAGCCTTGTGCAAAA...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp TTAATTGGCTATATCCTCTCACTGGATAACTTATACTCAACAAAGGCAGCTAGTTGCACAACGCTGTGCTaGCATGCTACTTGCACTGTA +
Preference number: 4 (lower is better)
Translates to: LIGYILSLDNLYSTKAASCTTLC*HATCTV
Trigger: TACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCA...ACTAGCTGCCTTTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGCCAATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAATGCACAACGCTGTGCTaGCATGCTACTTGCACTGTA +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKCTTLC*HATCTV
Trigger: TACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCA...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTTGTGAAATCCTTCACTaGCATCACTTCCCACGTGAC +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLCEILH*HHFPRD
Trigger: GTCACGTGGGAAGTGATGGCAGTGAAGGATTTCACA...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATGAGCAGAGATCCAGCTaGCTCTTTGAGCTCCTCATC +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNEQRSS*LFELLI
Trigger: GATGAGGAGCTCAAAGAGGCAGCTGGATCTCTGCTC...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTAGCTGGTCCAAAGGATaGCACATCATCTCCCTCTAT +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLSWSKG*HIISLY
Trigger: ATAGAGGGAGATGATGTGCCATCCTTTGGACCAGCT...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTTTGAGGTTTCGCACCTaGTTCTGCTTGATTACAGAG +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCLRFRT*FCLITE
Trigger: CTCTGTAATCAAGCAGAACCAGGTGCGAAACCTCAA...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
3UTR CAA 72 bp TACAGCTTTGTGAAGTATTCACATCTGTTGCTTAAATaGCTGGCAAAGGCCTCCTGGTCTACCAAGACATAT +
Preference number: 4 (lower is better)
Translates to: YSFVKYSHLLLK*LAKASWSTKTY
Trigger: ATATGTCTTGGTAGACCAGGAGGCCTTTGCCAGCAATTTAAGCAACAGATGTGAATACTTCACAAAGCTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp AATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAGCCAGTTCAAGTTTGTaGGTTCATCATCTGCTGACT +
Preference number: 4 (lower is better)
Translates to: NLFLMDQWHYRLLHCLLKASSSL*VHHLLT
Trigger: AGTCAGCAGATGATGAACTCACAAACTTGAACTGGC...TTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGCCAGTTCAAGTTTGTaGGTTCATCATCTGCTGACT +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLASSSL*VHHLLT
Trigger: AGTCAGCAGATGATGAACTCACAAACTTGAACTGGC...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTCAATATCAGATTCTTTaGGGTTTCGCACCTGGTTCT +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCQYQIL*GFAPGS
Trigger: AGAACCAGGTGCGAAACCTCAAAGAATCTGATATTG...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTTCGCATCTTTTTGCCTaGCTGCCCTTTTTCAGAGAT +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLSHLFA*LPFFRD
Trigger: ATCTCTGAAAAAGGGCAGTCAGGCAAAAAGATGCGA...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTCTTCCAGCCTGTTGGTaGAGTAGCAAAATATGGAAA +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCLPACW*SSKIWK
Trigger: TTTCCATATTTTGCTACTGCACCAACAGGCTGGAAG...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAGGTTGCTTCTTCAGTaGCTGGATAAGATTGGGTTT +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCRLLLQ*LDKIGF
Trigger: AAACCCAATCTTATCCAGGCACTGAAGAAGCAACCT...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTACTGGGATGATGAAATaGATTGCCGTAACTCCTCTT +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCTGMMK*IAVTPL
Trigger: AAGAGGAGTTACGGCAATGCATTTCATCATCCCAGT...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATGTGAAATCCTTCACTaGCATCACTTCCCACGTGAC +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKECEILH*HHFPRD
Trigger: GTCACGTGGGAAGTGATGGCAGTGAAGGATTTCACA...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTCAATGGACTAACAATTaGAAGACCCTCACTTCCGAG +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLQWTNN*KTLTSE
Trigger: CTCGGAAGTGAGGGTCTTCCAATTGTTAGTCCATTG...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCCTGGCAAAGGCCTCCTaGTCTACCAAGACATATACA +
Preference number: 4 (lower is better)
Translates to: KITLKIPIRAGTNSASLSLAKAS*STKTYT
Trigger: TGTATATGTCTTGGTAGACCAGGAGGCCTTTGCCAG...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAATCGCATCTTTTTGCCTaGCTGCCCTTTTTCAGAGAT +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKSHLFA*LPFFRD
Trigger: ATCTCTGAAAAAGGGCAGTCAGGCAAAAAGATGCGA...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTTCCTCATCAATTTCTTaGCATGTCTGTTTTCGCATC +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCSSSIS*HVCFRI
Trigger: GATGCGAAAACAGACATGTCAAGAAATTGATGAGGA...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp GAATTTCAGCAGAACAAAATAAACTGGTGCCAGATCACTGAAACACTGTTCCTAGTTTCTCAAAACACCTaGGGAATGAGAGCATACTCT +
Preference number: 4 (lower is better)
Translates to: EFQQNKINWCQITETLFLVSQNT*GMRAYS
Trigger: AGAGTATGCTCTCATTCCTCAGGTGTTTTGAGAAAC...TAGGAACAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTTCTGCTGAAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGGTGGAAAAAGGGAGGTaGTCCACCTTTTCCATGAAT +
Preference number: 4 (lower is better)
Translates to: FPTLKLMKSIMALISLVKVEKGR*STFSMN
Trigger: ATTCATGGAAAAGGTGGATCACCTCCCTTTTTCCAC...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp ACACACTTAATTGGCTATATCCTCTCACTGGATAACTTATACTCAACAAAGGCAAACGCTGTGCTGCCATaGTACTTGCACTGTAATTGT +
Preference number: 4 (lower is better)
Translates to: THLIGYILSLDNLYSTKANAVLP*YLHCNC
Trigger: ACAATTACAGTGCAAGTAGCATGGCAGCACAGCGTT...TGCCTTTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGCCAATTAAGTGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTATCTGTTGCTTAAATTaGTGGCAAAGGCCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCICCLN*WQRPPG
Trigger: ACCAGGAGGCCTTTGCCAGCAATTTAAGCAACAGAT...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp GAATTTCAGCAGAACAAAATAAACTGGTGCCAGATCACTGAAACACTGTTCCTAAATCTTTTCAGCTCCTaGGGTTTCAGCTCTCTTATC +
Preference number: 4 (lower is better)
Translates to: EFQQNKINWCQITETLFLNLFSS*GFSSLI
Trigger: GATAAGAGAGCTGAAACCCCAGGAGCTGAAAAGATT...TAGGAACAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTTCTGCTGAAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAACAATGGACTAACAATTaGAAGACCCTCACTTCCGAG +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKQWTNN*KTLTSE
Trigger: CTCGGAAGTGAGGGTCTTCCAATTGTTAGTCCATTG...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTATTCTTCCAGCCTGTTaGTGCAGTAGCAAAATATGG +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLILPAC*CSSKIW
Trigger: CCATATTTTGCTACTGCACCAACAGGCTGGAAGAAT...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAATTGAGGTTTCGCACCTaGTTCTGCTTGATTACAGAG +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKLRFRT*FCLITE
Trigger: CTCTGTAATCAAGCAGAACCAGGTGCGAAACCTCAA...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTCTTTTGGATCAATGCTaGTGGCTAAAGAATCACTCT +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCLLDQC*WLKNHS
Trigger: AGAGTGATTCTTTAGCCACCAGCATTGATCCAAAAG...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATGTTGCTTAAATTGCTaGCAAAGGCCTCCTGGTCTA +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKECCLNC*QRPPGL
Trigger: TAGACCAGGAGGCCTTTGCCAGCAATTTAAGCAACA...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAAAGATTAGTGCTTTCATaGAGCCAGTTCAAGTTTGTG +
Preference number: 4 (lower is better)
Translates to: IFFSWINGTIGCYTASSKRLVLS*SQFKFV
Trigger: CACAAACTTGAACTGGCTTCATGAAAGCACTAATCT...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp TTAATTGGCTATATCCTCTCACTGGATAACTTATACTCAACAAAGGCAGCTAGTGCACCTGGTTCTGCTTaGTTACAGAGCTTAAATAGT +
Preference number: 4 (lower is better)
Translates to: LIGYILSLDNLYSTKAASAPGSA*LQSLNS
Trigger: ACTATTTAAGCTCTGTAATCAAGCAGAACCAGGTGC...ACTAGCTGCCTTTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGCCAATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGCAATATCAGATTCTTTaGGGTTTCGCACCTGGTTCT +
Preference number: 4 (lower is better)
Translates to: FPTLKLMKSIMALISLVKQYQIL*GFAPGS
Trigger: AGAACCAGGTGCGAAACCTCAAAGAATCTGATATTG...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAACCATCACTTCCCACGTaGCTATTCTTTGGGATAAAT +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEPSLPT*LFFGIN
Trigger: ATTTATCCCAAAGAATAGTCACGTGGGAAGTGATGG...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGCCATCACTTCCCACGTaGCTATTCTTTGGGATAAAT +
Preference number: 4 (lower is better)
Translates to: FPTLKLMKSIMALISLVKPSLPT*LFFGIN
Trigger: ATTTATCCCAAAGAATAGTCACGTGGGAAGTGATGG...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTGTATCTTCTTCACTGTaGAATCCTTCACTGCCATCA +
Preference number: 4 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCVSSSL*NPSLPS
Trigger: TGATGGCAGTGAAGGATTTCACAGTGAAGAAGATAC...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGGTATCTTCTTCACTGTaGAATCCTTCACTGCCATCA +
Preference number: 4 (lower is better)
Translates to: FPTLKLMKSIMALISLVKVSSSL*NPSLPS
Trigger: TGATGGCAGTGAAGGATTTCACAGTGAAGAAGATAC...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAAGGGAGTGTTCTTGGATaGAATGACACCACAAAATTG +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEGSVLG*NDTTKL
Trigger: CAATTTTGTGGTGTCATTTCATCCAAGAACACTCCC...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAAACTGAACATCTAGTATaGGCCCTTTACATAATGCCT +
Preference number: 4 (lower is better)
Translates to: IFFSWINGTIGCYTASSKTEHLV*ALYIMP
Trigger: AGGCATTATGTAAAGGGCTCATACTAGATGTTCAGT...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAACTTCCAGCCTGTTGGTaGAGTAGCAAAATATGGAAA +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKLPACW*SSKIWK
Trigger: TTTCCATATTTTGCTACTGCACCAACAGGCTGGAAG...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAAGGTTGCTTCTTCAGTaGCTGGATAAGATTGGGTTT +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKRLLLQ*LDKIGF
Trigger: AAACCCAATCTTATCCAGGCACTGAAGAAGCAACCT...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp ACACACTTAATTGGCTATATCCTCTCACTGGATAACTTATACTCAACAAAGGCAGCTGAAGAAAAAGGTTaGTTCTTCAGTGCCTGGATA +
Preference number: 4 (lower is better)
Translates to: THLIGYILSLDNLYSTKAAEEKG*FFSAWI
Trigger: TATCCAGGCACTGAAGAAGCAACCTTTTTCTTCAGC...TGCCTTTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGCCAATTAAGTGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGGCTGAAGAAAAAGGTTaGTTCTTCAGTGCCTGGATA +
Preference number: 4 (lower is better)
Translates to: FPTLKLMKSIMALISLVKAEEKG*FFSAWI
Trigger: TATCCAGGCACTGAAGAAGCAACCTTTTTCTTCAGC...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTTTTCGCACCTGGTTCTaGTTGATTACAGAGCTTAAA +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLFRTWF*LITELK
Trigger: TTTAAGCTCTGTAATCAAGCAGAACCAGGTGCGAAA...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAACTGGGATGATGAAATaGATTGCCGTAACTCCTCTT +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKTGMMK*IAVTPL
Trigger: AAGAGGAGTTACGGCAATGCATTTCATCATCCCAGT...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGTGCTGCCATGCTACTTaGACTGTAATTGTGATCTTC +
Preference number: 4 (lower is better)
Translates to: FPTLKLMKSIMALISLVKCCHAT*TVIVIF
Trigger: GAAGATCACAATTACAGTGCAAGTAGCATGGCAGCA...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAATGCTGCCATGCTACTTaGACTGTAATTGTGATCTTC +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKCCHAT*TVIVIF
Trigger: GAAGATCACAATTACAGTGCAAGTAGCATGGCAGCA...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATAACGCTGTGCTGCCATaGTACTTGCACTGTAATTGT +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNNAVLP*YLHCNC
Trigger: ACAATTACAGTGCAAGTAGCATGGCAGCACAGCGTT...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAACTTATGTTACCGGATTaGGTGTCAGGAGAGAAGTAT +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKELMLPD*VSGEKY
Trigger: ATACTTCTCTCCTGACACGCAATCCGGTAACATAAG...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAAAATCTTTTCAGCTCCTaGGGTTTCAGCTCTCTTATC +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKENLFSS*GFSSLI
Trigger: GATAAGAGAGCTGAAACCCCAGGAGCTGAAAAGATT...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTTGCAGTAGCAAAATATaGAAAATGGTCCAGAATCCA +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCCSSKI*KMVQNP
Trigger: TGGATTCTGGACCATTTTCCATATTTTGCTACTGCA...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTTGCTTCTTCAGTGCCTaGATAAGATTGGGTTTATAT +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCCFFSA*IRLGLY
Trigger: ATATAAACCCAATCTTATCCAGGCACTGAAGAAGCA...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTGTAATCGTACAGCACTaGGATGATGAAATGCATTGC +
Preference number: 4 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCVIVQH*DDEMHC
Trigger: GCAATGCATTTCATCATCCCAGTGCTGTACGATTAC...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAAGTAATCGTACAGCACTaGGATGATGAAATGCATTGC +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEVIVQH*DDEMHC
Trigger: GCAATGCATTTCATCATCCCAGTGCTGTACGATTAC...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp GAATTTCAGCAGAACAAAATAAACTGGTGCCAGATCACTGAAACACTGTTCCTATTGGATCAATGCTGGTaGCTAAAGAATCACTCTCTT +
Preference number: 4 (lower is better)
Translates to: EFQQNKINWCQITETLFLLDQCW*LKNHSL
Trigger: AAGAGAGTGATTCTTTAGCCACCAGCATTGATCCAA...TAGGAACAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTTCTGCTGAAATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTCTTTTGGATCAATGCTaGTGGCTAAAGAATCACTCT +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLLLDQC*WLKNHS
Trigger: AGAGTGATTCTTTAGCCACCAGCATTGATCCAAAAG...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAAAGATTAGTGCTTTCATaGAGCCAGTTCAAGTTTGTG +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKERLVLS*SQFKFV
Trigger: CACAAACTTGAACTGGCTTCATGAAAGCACTAATCT...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGCTATGCAGGATCTCTaGAGTAAAAACACTTCAAAG +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKAMQDL*SKNTSK
Trigger: CTTTGAAGTGTTTTTACTTCAGAGATCCTGCATAGC...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp GAATTTCAGCAGAACAAAATAAACTGGTGCCAGATCACTGAAACACTGTTCCTAAATCACAGAAACAGCTaGAAGCAAATCAACATCATG +
Preference number: 4 (lower is better)
Translates to: EFQQNKINWCQITETLFLNHRNS*KQINIM
Trigger: CATGATGTTGATTTGCTTTCAGCTGTTTCTGTGATT...TAGGAACAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTTCTGCTGAAATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATTTCGCACCTGGTTCTaGTTGATTACAGAGCTTAAA +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEFRTWF*LITELK
Trigger: TTTAAGCTCTGTAATCAAGCAGAACCAGGTGCGAAA...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTCTTCTTTTGGATCAATaGTGGTGGCTAAAGAATCAC +
Preference number: 4 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCLLLDQ*WWLKNH
Trigger: GTGATTCTTTAGCCACCAGCATTGATCCAAAAGAAG...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAACTTCTTTTGGATCAATaGTGGTGGCTAAAGAATCAC +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKLLLDQ*WWLKNH
Trigger: GTGATTCTTTAGCCACCAGCATTGATCCAAAAGAAG...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR GCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATAAAGGCCCCAATAAATaGTATGCAGGATCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNKGPNK*YAGSLK
Trigger: CTTCAGAGATCCTGCATAGCATTTATTGGGGCCTTT...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTTATAGGTTGTTACACTaGCTCCTCAAAAAGGTGTAT +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLYRLLH*LLKKVY
Trigger: ATACACCTTTTTGAGGAGGCAGTGTAACAACCTATA...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp TTAATTGGCTATATCCTCTCACTGGATAACTTATACTCAACAAAGGCAGCTAGTCCAAATACCTCATCCTaGATGCTTAAGGGTTTTCAT +
Preference number: 4 (lower is better)
Translates to: LIGYILSLDNLYSTKAASPNTSS*MLKGFH
Trigger: ATGAAAACCCTTAAGCATGCAGGATGAGGTATTTGG...ACTAGCTGCCTTTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGCCAATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAAAACAAAATAAACTGGTaGCAGATCACTGAAACACTG +
Preference number: 4 (lower is better)
Translates to: IFFSWINGTIGCYTASSKNKINW*QITETL
Trigger: CAGTGTTTCAGTGATCTGGCACCAGTTTATTTTGTT...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAACCTGTTAGCTTTCAGTaGACAAGTGTTTATCATCCT +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKPVSFQ*TSVYHP
Trigger: AGGATGATAAACACTTGTGCACTGAAAGCTAACAGG...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAAAGTATTCACATCTGTTaGTTAAATTGCTGGCAAAGG +
Preference number: 4 (lower is better)
Translates to: IFFSWINGTIGCYTASSKSIHIC*LNCWQR
Trigger: CCTTTGCCAGCAATTTAAGCAACAGATGTGAATACT...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTAGTCATTCCAATTACTaGACCCATTTACTCTTACAG +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLSHSNY*THLLLQ
Trigger: CTGTAAGAGTAAATGGGTCCAGTAATTGGAATGACT...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATTCAGCTCTCTTATCTaGAGTCATTCCAATTACTGG +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEFSSLI*SHSNYW
Trigger: CCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAA...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCAGGCAAACATTTATTTaGAGAGTGCTCAATGGCCAT +
Preference number: 4 (lower is better)
Translates to: KITLKIPIRAGTNSASLSRQTFI*RVLNGH
Trigger: ATGGCCATTGAGCACTCTCCAAATAAATGTTTGCCT...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAGGCAAACATTTATTTaGAGAGTGCTCAATGGCCAT +
Preference number: 4 (lower is better)
Translates to: FPTLKLMKSIMALISLVKRQTFI*RVLNGH
Trigger: ATGGCCATTGAGCACTCTCCAAATAAATGTTTGCCT...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATATTCTTCCAGCCTGTTaGTGCAGTAGCAAAATATGG +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNILPAC*CSSKIW
Trigger: CCATATTTTGCTACTGCACCAACAGGCTGGAAGAAT...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAATTGGATCAATGCTGGTaGCTAAAGAATCACTCTCTT +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKLDQCW*LKNHSL
Trigger: AAGAGAGTGATTCTTTAGCCACCAGCATTGATCCAA...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCACAAGTGTGTCAAAATaGGTGTACTCCATAACACAC +
Preference number: 4 (lower is better)
Translates to: KITLKIPIRAGTNSASLSTSVSK*VYSITH
Trigger: GTGTGTTATGGAGTACACCCATTTTGACACACTTGT...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTTTTCTCATGGATCAATaGCACTATAGGTTGTTACAC +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLFLMDQ*HYRLLH
Trigger: GTGTAACAACCTATAGTGCCATTGATCCATGAGAAA...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAACAGTGATTCTGTTTaGGATGTGAAGATGAACAAT +
Preference number: 4 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCNSDSV*DVKMNN
Trigger: ATTGTTCATCTTCACATCCCAAACAGAATCACTGTT...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATTCCTCATCAATTTCTTaGCATGTCTGTTTTCGCATC +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNSSSIS*HVCFRI
Trigger: GATGCGAAAACAGACATGTCAAGAAATTGATGAGGA...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR TCA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCCACATGGCAGGCAAATaGAAGATTCTCTTATTACAA +
Preference number: 4 (lower is better)
Translates to: KITLKIPIRAGTNSASLSHMAGK*KILLLQ
Trigger: TTGTAATAAGAGAATCTTTCATTTGCCTGCCATGTG...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATCAGGTAGCACATTTGTaGTACAGAATTTCAGCAGAA +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNQVAHL*YRISAE
Trigger: TTCTGCTGAAATTCTGTATCACAAATGTGCTACCTG...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR TCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATGTCTTTACAGCTTTGTaGAGTATTCACATCTGTTGC +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNVFTAL*SIHICC
Trigger: GCAACAGATGTGAATACTTCACAAAGCTGTAAAGAC...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATTTCAGCTCTCTTATCTaGAGTCATTCCAATTACTGG +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNFSSLI*SHSNYW
Trigger: CCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAA...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATGCAGTAGCAAAATATaGAAAATGGTCCAGAATCCA +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKECSSKI*KMVQNP
Trigger: TGGATTCTGGACCATTTTCCATATTTTGCTACTGCA...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAATGCTTCTTCAGTGCCTaGATAAGATTGGGTTTATAT +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKCFFSA*IRLGLY
Trigger: ATATAAACCCAATCTTATCCAGGCACTGAAGAAGCA...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CCA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAACATAACACACTTAATTaGCTATATCCTCTCACTGGA +
Preference number: 4 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKHNTLN*LYPLTG
Trigger: TCCAGTGAGAGGATATAGCCAATTAAGTGTGTTATG...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTATAATACAGTACACATaGCAGGCAAATGAAAGATTC +
Preference number: 4 (lower is better)
Translates to: YPFPTLKLMKSIMALISLIIQYT*QANERF
Trigger: GAATCTTTCATTTGCCTGCCATGTGTACTGTATTAT...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR GCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTATACCTCATCCTGCATaGTTAAGGGTTTTCATTATT +
Preference number: 4 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCIPHPA*LRVFII
Trigger: AATAATGAAAACCCTTAAGCATGCAGGATGAGGTAT...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTCACGTGACTATTCTTTaGGATAAATTCATATACCTC +
Preference number: 4 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCHVTIL*DKFIYL
Trigger: GAGGTATATGAATTTATCCCAAAGAATAGTCACGTG...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAAGCTATATCCTCTCACTaGATAACTTATACTCAACAA +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEAISSH*ITYTQQ
Trigger: TTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGC...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAAGGATCTATTATAAACTaGAATCAGCTGCAACAAAAC +
Preference number: 4 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEGSIIN*NQLQQN
Trigger: GTTTTGTTGCAGCTGATTCCAGTTTATAATAGATCC...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CCA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATCACGTGACTATTCTTTaGGATAAATTCATATACCTC +
Preference number: 4 (lower is better)
Translates to: PTLKLMKSIMALISLVKNHVTIL*DKFIYL
Trigger: GAGGTATATGAATTTATCCCAAAGAATAGTCACGTG...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CCA 90 bp TCAGCTCGGCCGGGAGGCGAGGGACCGGCCGGGGAAGACACAATATaGCAGAGCACCGCAGCTGTTCCCTGCAGCTTCCAGCAGTCGCCT +
Preference number: 5 (lower is better)
Translates to: SARPGGEGPAGEDTI*QSTAAVPCSFQQSP
Trigger: AGGCGACTGCTGGAAGCTGCAGGGAACAGCTGCGGTGCTCTGCCATATTGTGTCTTCCCCGGCCGGTCCCTCGCCTCCCGGCCGAGCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000413569.5
CDS GCA 90 bp CCGGCCGGGGAAGACACAATATGGCAGAGCACCGCAGCTGTTCCCTaGAGCTTCCAGCAGTCGCCTCCGGGAAGACGCGGCAACCAGCAG +
Preference number: 5 (lower is better)
Translates to: PAGEDTIWQSTAAVP*SFQQSPPGRRGNQQ
Trigger: CTGCTGGTTGCCGCGTCTTCCCGGAGGCGACTGCTGGAAGCTGCAGGGAACAGCTGCGGTGCTCTGCCATATTGTGTCTTCCCCGGCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000413569.5
CDS CCA 90 bp AGCTCCTGGGGTTTCAGCTCTCTTATCTGGAGTCATTCCAATTACTaGACCCATTTACTCTTACAGTTCGTCAGCTCGGCCGGGAGGCGA +
Preference number: 5 (lower is better)
Translates to: SSWGFSSLIWSHSNY*THLLLQFVSSAGRR
Trigger: TCGCCTCCCGGCCGAGCTGACGAACTGTAAGAGTAAATGGGTCCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAAACCCCAGGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000413569.5
CDS CCA 90 bp GTTCATCATCTGCTGACTCACTGTCCACTAGAGTGGCCTTCGGCCTaGCAGCATCAACAGCTTCAGGCAAGCTTCCCATTTTGTAAATCT +
Preference number: 5 (lower is better)
Translates to: VHHLLTHCPLEWPSA*QHQQLQASFPFCKS
Trigger: AGATTTACAAAATGGGAAGCTTGCCTGAAGCTGTTGATGCTGCCAGGCCGAAGGCCACTCTAGTGGACAGTGAGTCAGCAGATGATGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1
CDS GCA 90 bp ATATACCTCATCCACAGAAGACAGGGAAGACACGCTAGACCTGGATaGACAACGCTGTGCTGCCATGCTACTTGCACTGTAATTGTGATC +
Preference number: 5 (lower is better)
Translates to: IYLIHRRQGRHARPG*TTLCCHATCTVIVI
Trigger: GATCACAATTACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTGTCTTCCCTGTCTTCTGTGGATGAGGTATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS GCA 90 bp AGAAGACAGGGAAGACACGCTAGACCTGGATGCACAACGCTGTGCTaGCATGCTACTTGCACTGTAATTGTGATCTTCTTTTGGATCAAT +
Preference number: 5 (lower is better)
Translates to: RRQGRHARPGCTTLC*HATCTVIVIFFWIN
Trigger: ATTGATCCAAAAGAAGATCACAATTACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTGTCTTCCCTGTCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CCA 90 bp ACTGTGAAATCCTTCACTGCCATCACTTCCCACGTGACTATTCTTTaGGATAAATTCATATACCTCATCCACAGAAGACAGGGAAGACAC +
Preference number: 5 (lower is better)
Translates to: TVKSFTAITSHVTIL*DKFIYLIHRRQGRH
Trigger: GTGTCTTCCCTGTCTTCTGTGGATGAGGTATATGAATTTATCCCAAAGAATAGTCACGTGGGAAGTGATGGCAGTGAAGGATTTCACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAACATCTGTTGCTTAAATaGCTGGCAAAGGCCTCCTGG +
Preference number: 5 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKHLLLK*LAKASW
Trigger: CCAGGAGGCCTTTGCCAGCAATTTAAGCAACAGATG...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS CCA 90 bp TGCTACTTGCACTGTAATTGTGATCTTCTTTTGGATCAATGCTGGTaGCTAAAGAATCACTCTCTTGTAATCGTACAGCACTGGGATGAT +
Preference number: 5 (lower is better)
Translates to: CYLHCNCDLLLDQCW*LKNHSLVIVQHWDD
Trigger: ATCATCCCAGTGCTGTACGATTACAAGAGAGTGATTCTTTAGCCACCAGCATTGATCCAAAAGAAGATCACAATTACAGTGCAAGTAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAACAGGCAAACATTTATTaGGAGAGTGCTCAATGGCCA +
Preference number: 5 (lower is better)
Translates to: IFFSWINGTIGCYTASSKQANIY*ESAQWP
Trigger: TGGCCATTGAGCACTCTCCAAATAAATGTTTGCCTG...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAAGTGCTGCCATGCTACTaGCACTGTAATTGTGATCTT +
Preference number: 5 (lower is better)
Translates to: IFFSWINGTIGCYTASSKVLPCY*HCNCDL
Trigger: AAGATCACAATTACAGTGCAAGTAGCATGGCAGCAC...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp AAAATAACTTTGAAGATCCCTATTAGAGCTGGAACTAACTCTGCTTCTCTTTCCGATCCAGCTGCCTCTTaGAGCTCCTCATCAATTTCT +
Preference number: 5 (lower is better)
Translates to: KITLKIPIRAGTNSASLSDPAAS*SSSSIS
Trigger: AGAAATTGATGAGGAGCTCAAAGAGGCAGCTGGATC...GGAAAGAGAAGCAGAGTTAGTTCCAGCTCTAATAGGGATCTTCAAAGTTATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGATCCAGCTGCCTCTTaGAGCTCCTCATCAATTTCT +
Preference number: 5 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKDPAAS*SSSSIS
Trigger: AGAAATTGATGAGGAGCTCAAAGAGGCAGCTGGATC...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CCA 90 bp ATGTCGAACAGAATTCTTCCAGCCTGTTGGTGCAGTAGCAAAATATaGAAAATGGTCCAGAATCCAGCTATAAATTTCTTTGACAGGCAA +
Preference number: 5 (lower is better)
Translates to: MSNRILPACWCSSKI*KMVQNPAINFFDRQ
Trigger: TTGCCTGTCAAAGAAATTTATAGCTGGATTCTGGACCATTTTCCATATTTTGCTACTGCACCAACAGGCTGGAAGAATTCTGTTCGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1
CDS CCA 90 bp CCATTTTGTGAAGATGCTGAAGAAAAAGGTTGCTTCTTCAGTGCCTaGATAAGATTGGGTTTATATTCCGGATCAACACACCATAAGGAA +
Preference number: 5 (lower is better)
Translates to: PFCEDAEEKGCFFSA*IRLGLYSGSTHHKE
Trigger: TTCCTTATGGTGTGTTGATCCGGAATATAAACCCAATCTTATCCAGGCACTGAAGAAGCAACCTTTTTCTTCAGCATCTTCACAAAATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1
CDS-3UTR CAA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGCCTTTTCCATTAACCTaGCCATGGCTTCTTTCCACT +
Preference number: 5 (lower is better)
Translates to: FPTLKLMKSIMALISLVKPFPLT*PWLLST
Trigger: AGTGGAAAGAAGCCATGGCAAGGTTAATGGAAAAGG...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp ATCTTTTTCTCATGGATCAATGGCACTATAGGTTGTTACACTGCCTCCTCAAAAAGTGCCTGGATAAGATaGGGTTTATATTCCGGATCA +
Preference number: 5 (lower is better)
Translates to: IFFSWINGTIGCYTASSKSAWIR*GLYSGS
Trigger: TGATCCGGAATATAAACCCAATCTTATCCAGGCACT...TTTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTGATCCATGAGAAAAAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp CCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAAGTGCTGCCATGCTACTaGCACTGTAATTGTGATCTT +
Preference number: 5 (lower is better)
Translates to: PYPKTNEVHYGFDIPCKEVLPCY*HCNCDL
Trigger: AAGATCACAATTACAGTGCAAGTAGCATGGCAGCAC...TTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp TATAGGGAATACAATTTCCAGGCCATAGGACTTGGAATGACTCTACTTAATTGTCAATGGCACTATAGGTaGTTACACTGCCTCCTCAAA +
Preference number: 5 (lower is better)
Translates to: YREYNFQAIGLGMTLLNCQWHYR*LHCLLK
Trigger: TTTGAGGAGGCAGTGTAACAACCTATAGTGCCATTG...ACAATTAAGTAGAGTCATTCCAAGTCCTATGGCCTGGAAATTGTATTCCCTATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATCAGGCAAACATTTATTaGGAGAGTGCTCAATGGCCA +
Preference number: 5 (lower is better)
Translates to: PTLKLMKSIMALISLVKNQANIY*ESAQWP
Trigger: TGGCCATTGAGCACTCTCCAAATAAATGTTTGCCTG...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATCCTTTTCCATTAACCTaGCCATGGCTTCTTTCCACT +
Preference number: 5 (lower is better)
Translates to: PTLKLMKSIMALISLVKNPFPLT*PWLLST
Trigger: AGTGGAAAGAAGCCATGGCAAGGTTAATGGAAAAGG...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp TTAATTGGCTATATCCTCTCACTGGATAACTTATACTCAACAAAGGCAGCTAGTTCAATATCAGATTCTTaGAGGTTTCGCACCTGGTTC +
Preference number: 5 (lower is better)
Translates to: LIGYILSLDNLYSTKAASSISDS*RFRTWF
Trigger: GAACCAGGTGCGAAACCTCAAAGAATCTGATATTGA...ACTAGCTGCCTTTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGCCAATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGTCAATATCAGATTCTTaGAGGTTTCGCACCTGGTTC +
Preference number: 5 (lower is better)
Translates to: FPTLKLMKSIMALISLVKSISDS*RFRTWF
Trigger: GAACCAGGTGCGAAACCTCAAAGAATCTGATATTGA...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp TATCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTCTTTTTCAGAGATTTTaGCACAAGGCTGTGATGCAT +
Preference number: 5 (lower is better)
Translates to: YPFPTLKLMKSIMALISLLFQRF*HKAVMH
Trigger: ATGCATCACAGCCTTGTGCAAAAATCTCTGAAAAAG...AAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp TCCCTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTCAGAAGAAAGGATTTTaGTCCCACAAGTTTAAGACA +
Preference number: 5 (lower is better)
Translates to: SLPYPKTNEVHYGFDIPCQKKGF*SHKFKT
Trigger: TGTCTTAAACTTGTGGGACAAAAATCCTTTCTTCTG...ACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAGGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp CCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAATTCTTATGTTACCGGATaGCGTGTCAGGAGAGAAGTA +
Preference number: 5 (lower is better)
Translates to: PTLKLMKSIMALISLVKNSYVTG*RVRREV
Trigger: TACTTCTCTCCTGACACGCAATCCGGTAACATAAGA...ATTCTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp TTAATTGGCTATATCCTCTCACTGGATAACTTATACTCAACAAAGGCAGCTAGTGAATTGGGAGTGTTCTaGGATGAAATGACACCACAA +
Preference number: 5 (lower is better)
Translates to: LIGYILSLDNLYSTKAASELGVF*DEMTPQ
Trigger: TTGTGGTGTCATTTCATCCAAGAACACTCCCAATTC...ACTAGCTGCCTTTGTTGAGTATAAGTTATCCAGTGAGAGGATATAGCCAATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAATGTTTGCAAAGCACTTaGGGAAAGAATAAAAGGCCC +
Preference number: 5 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKCLQST*GKNKRP
Trigger: GGGCCTTTTATTCTTTCCCAAAGTGCTTTGCAAACA...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS-3UTR CAA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGCTTTTTCAGAGATTTTaGCACAAGGCTGTGATGCAT +
Preference number: 5 (lower is better)
Translates to: FPTLKLMKSIMALISLVKLFQRF*HKAVMH
Trigger: ATGCATCACAGCCTTGTGCAAAAATCTCTGAAAAAG...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp CTTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAACCGTTGCTTTTGATTTaGTGTCTTTGCAGTACTTAT +
Preference number: 5 (lower is better)
Translates to: LPYPKTNEVHYGFDIPCKPLLLI*CLCSTY
Trigger: ATAAGTACTGCAAAGACACAAAATCAAAAGCAACGG...TTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS-3UTR CAA 90 bp TTCCCTACCCTAAAACTAATGAAGTCCATTATGGCTTTGATATCCCTTGTAAAGAAGTATTCACATCTGTaGCTTAAATTGCTGGCAAAG +
Preference number: 5 (lower is better)
Translates to: FPTLKLMKSIMALISLVKKYSHL*LKLLAK
Trigger: CTTTGCCAGCAATTTAAGCAACAGATGTGAATACTT...CTTTACAAGGGATATCAAAGCCATAATGGACTTCATTAGTTTTAGGGTAGGGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000340553.8
CDS GCA 72 bp GAAGACACAATATGGCAGAGCACCGCAGCTGTTCCCTaGAGCTTCCAGCAGTCGCCTCCGGGAAGACGCGGC +
Preference number: 6 (lower is better)
Translates to: EDTIWQSTAAVP*SFQQSPPGRRG
Trigger: GCCGCGTCTTCCCGGAGGCGACTGCTGGAAGCTGCAGGGAACAGCTGCGGTGCTCTGCCATATTGTGTCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000413569.5
CDS CCA 72 bp CTGCTGACTCACTGTCCACTAGAGTGGCCTTCGGCCTaGCAGCATCAACAGCTTCAGGCAAGCTTCCCATTT +
Preference number: 6 (lower is better)
Translates to: LLTHCPLEWPSA*QHQQLQASFPF
Trigger: AAATGGGAAGCTTGCCTGAAGCTGTTGATGCTGCCAGGCCGAAGGCCACTCTAGTGGACAGTGAGTCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1
CDS GCA 72 bp ATCCACAGAAGACAGGGAAGACACGCTAGACCTGGATaGACAACGCTGTGCTGCCATGCTACTTGCACTGTA +
Preference number: 6 (lower is better)
Translates to: IHRRQGRHARPG*TTLCCHATCTV
Trigger: TACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTGTCTTCCCTGTCTTCTGTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS GCA 72 bp CAGGGAAGACACGCTAGACCTGGATGCACAACGCTGTaGTGCCATGCTACTTGCACTGTAATTGTGATCTTC +
Preference number: 6 (lower is better)
Translates to: QGRHARPGCTTL*CHATCTVIVIF
Trigger: GAAGATCACAATTACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTGTCTTCCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS GCA 72 bp GGAAGACACGCTAGACCTGGATGCACAACGCTGTGCTaGCATGCTACTTGCACTGTAATTGTGATCTTCTTT +
Preference number: 6 (lower is better)
Translates to: GRHARPGCTTLC*HATCTVIVIFF
Trigger: AAAGAAGATCACAATTACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTGTCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CCA 72 bp ATTAGGGAACCTAAACATGTACGAATTCCAGCAAGGTaGAGCAGAGATCCAGCTGCCTCTTTGAGCTCCTCA +
Preference number: 6 (lower is better)
Translates to: IREPKHVRIPAR*SRDPAASLSSS
Trigger: TGAGGAGCTCAAAGAGGCAGCTGGATCTCTGCTCCACCTTGCTGGAATTCGTACATGTTTAGGTTCCCTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CCA 72 bp GGTTTCAGCTCTCTTATCTGGAGTCATTCCAATTACTaGACCCATTTACTCTTACAGTTCGTCAGCTCGGCC +
Preference number: 6 (lower is better)
Translates to: GFSSLIWSHSNY*THLLLQFVSSA
Trigger: GGCCGAGCTGACGAACTGTAAGAGTAAATGGGTCCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000413569.5
CDS TCA 72 bp GATCCAGCTGCCTCTTTGAGCTCCTCATCAATTTCTTaGCATGTCTGTTTTCGCATCTTTTTGCCTGACTGC +
Preference number: 6 (lower is better)
Translates to: DPAASLSSSSIS*HVCFRIFLPDC
Trigger: GCAGTCAGGCAAAAAGATGCGAAAACAGACATGTCAAGAAATTGATGAGGAGCTCAAAGAGGCAGCTGGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CCA 72 bp TCCTTCACTGCCATCACTTCCCACGTGACTATTCTTTaGGATAAATTCATATACCTCATCCACAGAAGACAG +
Preference number: 6 (lower is better)
Translates to: SFTAITSHVTIL*DKFIYLIHRRQ
Trigger: CTGTCTTCTGTGGATGAGGTATATGAATTTATCCCAAAGAATAGTCACGTGGGAAGTGATGGCAGTGAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CCA 72 bp AATCTTTTCAGCTCCTGGGGTTTCAGCTCTCTTATCTaGAGTCATTCCAATTACTGGACCCATTTACTCTTA +
Preference number: 6 (lower is better)
Translates to: NLFSSWGFSSLI*SHSNYWTHLLL
Trigger: TAAGAGTAAATGGGTCCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAAACCCCAGGAGCTGAAAAGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000413569.5
CDS CCA 72 bp GAAGATGCTGAAGAAAAAGGTTGCTTCTTCAGTGCCTaGATAAGATTGGGTTTATATTCCGGATCAACACAC +
Preference number: 6 (lower is better)
Translates to: EDAEEKGCFFSA*IRLGLYSGSTH
Trigger: GTGTGTTGATCCGGAATATAAACCCAATCTTATCCAGGCACTGAAGAAGCAACCTTTTTCTTCAGCATCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1
CDS CCA 72 bp TGGCTAAAGAATCACTCTCTTGTAATCGTACAGCACTaGGATGATGAAATGCATTGCCGTAACTCCTCTTTT +
Preference number: 6 (lower is better)
Translates to: WLKNHSLVIVQH*DDEMHCRNSSF
Trigger: AAAAGAGGAGTTACGGCAATGCATTTCATCATCCCAGTGCTGTACGATTACAAGAGAGTGATTCTTTAGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CAA 90 bp GAAGATGCTGAAGAAAAAGGTTGCTTCTTCAGTGCCTGGATAAGATaGGGTTTATATTCCGGATCAACACACCATAAGGAACCTTTTCCA +
Preference number: 6 (lower is better)
Translates to: EDAEEKGCFFSAWIR*GLYSGSTHHKEPFP
Trigger: TGGAAAAGGTTCCTTATGGTGTGTTGATCCGGAATATAAACCCAATCTTATCCAGGCACTGAAGAAGCAACCTTTTTCTTCAGCATCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1
CDS CCA 72 bp CACTGTAATTGTGATCTTCTTTTGGATCAATGCTGGTaGCTAAAGAATCACTCTCTTGTAATCGTACAGCAC +
Preference number: 6 (lower is better)
Translates to: HCNCDLLLDQCW*LKNHSLVIVQH
Trigger: GTGCTGTACGATTACAAGAGAGTGATTCTTTAGCCACCAGCATTGATCCAAAAGAAGATCACAATTACAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CAA 72 bp GAAGAAAAAGGTTGCTTCTTCAGTGCCTGGATAAGATaGGGTTTATATTCCGGATCAACACACCATAAGGAA +
Preference number: 6 (lower is better)
Translates to: EEKGCFFSAWIR*GLYSGSTHHKE
Trigger: TTCCTTATGGTGTGTTGATCCGGAATATAAACCCAATCTTATCCAGGCACTGAAGAAGCAACCTTTTTCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1
CDS TCA 72 bp ATGGAAAATGGTCCAGAATCCAGCTATAAATTTCTTTaGCAGGCAAACATTTATTTGGAGAGTGCTCAATGG +
Preference number: 6 (lower is better)
Translates to: MENGPESSYKFL*QANIYLESAQW
Trigger: CCATTGAGCACTCTCCAAATAAATGTTTGCCTGTCAAAGAAATTTATAGCTGGATTCTGGACCATTTTCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1
CDS GCA 72 bp TACTTGCACTGTAATTGTGATCTTCTTTTGGATCAATaGTGGTGGCTAAAGAATCACTCTCTTGTAATCGTA +
Preference number: 6 (lower is better)
Translates to: YLHCNCDLLLDQ*WWLKNHSLVIV
Trigger: TACGATTACAAGAGAGTGATTCTTTAGCCACCAGCATTGATCCAAAAGAAGATCACAATTACAGTGCAAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000340553.8
ENST00000616844.1
CDS CCA 72 bp AGAATTCTTCCAGCCTGTTGGTGCAGTAGCAAAATATaGAAAATGGTCCAGAATCCAGCTATAAATTTCTTT +
Preference number: 6 (lower is better)
Translates to: RILPACWCSSKI*KMVQNPAINFF
Trigger: AAAGAAATTTATAGCTGGATTCTGGACCATTTTCCATATTTTGCTACTGCACCAACAGGCTGGAAGAATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000340553.8
ENST00000413569.5
ENST00000616844.1