Pregenerated sensors for FOXD1 (Homo sapiens)
Ensembl gene IDs: ENSG00000251493Ensembl transcript IDs: ENST00000513595.1, ENST00000615637.3
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTAGTTGTTTTTCATCTGCCAAACGTCAAGGGAGCCTCTAGTGCCTaGACAGGGCGGACTCCCTTCCCCGGCACCCTCTTCCTCCCTACC | + |
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Preference number: 1 (lower is better) Translates to: LVVFHLPNVKGASSA*TGRTPFPGTLFLPT Trigger: GGTAGGGAGGAAGAGGGTGCCGGGGAAGGGAGTCCGCCCTGTCCAGGCACTAGAGGCTCCCTTGACGTTTGGCAGATGAAAAACAACTAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| 3UTR CAA 90 bp | GAGGGACCCGCAGAGCCAAAAGGCGCGCCCGGGCTGTTGACAGTTTaGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAG | + |
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Preference number: 2 (lower is better) Translates to: EGPAEPKGAPGLLTV*SENSQRRKWAREVE Trigger: CTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACAAAACTGTCAACAGCCCGGGCGCGCCTTTTGGCTCTGCGGGTCCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| 3UTR CCA 72 bp | TTTCATCTGCCAAACGTCAAGGGAGCCTCTAGTGCCTaGACAGGGCGGACTCCCTTCCCCGGCACCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: FHLPNVKGASSA*TGRTPFPGTLF Trigger: GAAGAGGGTGCCGGGGAAGGGAGTCCGCCCTGTCCAGGCACTAGAGGCTCCCTTGACGTTTGGCAGATGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR TCA 90 bp | TCAAGGGAGCCTCTAGTGCCTGGACAGGGCGGACTCCCTTCCCCGGCACCCTCTGCAGCGGCTGCCGCTTaGAGCGCTTCCTCCGGCGCA | + |
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Preference number: 4 (lower is better) Translates to: SREPLVPGQGGLPSPAPSAAAAA*SASSGA Trigger: TGCGCCGGAGGAAGCGCTTCAAGCGGCAGCCGCTGC...AGAGGGTGCCGGGGAAGGGAGTCCGCCCTGTCCAGGCACTAGAGGCTCCCTTGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR GCA 90 bp | CGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGGGCCGCGCCTGAGGCGCCCAGGAACGTaGGGGACGGGTGAGAGTCTA | + |
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Preference number: 4 (lower is better) Translates to: REFAAAKMGARGREGPRLRRPGT*GTGESL Trigger: TAGACTCTCACCCGTCCCGCACGTTCCTGGGCGCCT...CAGGCGCGGCCCCTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR GCA 90 bp | GCGCGCGAGGTCGAGAGGGGCCGCGCCTGGAGGAGCGAACAAAACACCGAACCAGGTGGGAGCAGCGGCTaGCGCTTGAAGCGCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: AREVERGRAWRSEQNTEPGGSSG*RLKRFL Trigger: GAGGAAGCGCTTCAAGCGGCAGCCGCTGCTCCCACC...TGGTTCGGTGTTTTGTTCGCTCCTCCAGGCGCGGCCCCTCTCGACCTCGCGCGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CCA 90 bp | CGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGGGCCGCGCCTGGGAGCCTCTAGTGCCTaGACAGGGCGGACTCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: REFAAAKMGARGREGPRLGASSA*TGRTPF Trigger: GAAGGGAGTCCGCCCTGTCCAGGCACTAGAGGCTCC...CAGGCGCGGCCCCTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR TCA 90 bp | GGGCGCGCGAGGTCGAGAGGGGCCGCGCCTGGAGGAGCGAACAAAACACCGAACCCAAGCTGCCCCCGATaGTGCTCTCGATGGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: GRARSRGAAPGGANKTPNPSCPR*CSRWRR Trigger: CCTTCTCCATCGAGAGCATCATCGGGGGCAGCTTGG...GTTCGGTGTTTTGTTCGCTCCTCCAGGCGCGGCCCCTCTCGACCTCGCGCGCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR GCA 90 bp | TCAAGGGAGCCTCTAGTGCCTGGACAGGGCGGACTCCCTTCCCCGGCACCCTCTAGGGCAGTCCCTTGGTaGAGAGTCCCCAAGGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: SREPLVPGQGGLPSPAPSRAVPW*RVPKAA Trigger: CGCCGCCTTGGGGACTCTGCACCAAGGGACTGCCCT...AGAGGGTGCCGGGGAAGGGAGTCCGCCCTGTCCAGGCACTAGAGGCTCCCTTGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CCA 90 bp | TGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGGGCCGCGGACAGGGCAGTCCCTTaGTGCAGAGTCCCCAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: CPRIRSGENGRARSRGAADRAVP*CRVPKA Trigger: CGCCTTGGGGACTCTGCACCAAGGGACTGCCCTGTC...CGCGGCCCCTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR TCA 90 bp | TGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGGGCCGCGAACGTGCGGGACGGGTaGGAGTCTAAGAACAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: CPRIRSGENGRARSRGAANVRDG*ESKNRA Trigger: AGCTCTGTTCTTAGACTCTCACCCGTCCCGCACGTT...CGCGGCCCCTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CCA 90 bp | GGAGGAGCGAACAAAACACCGAACCACCAAGACGAGAAAAGGAGCCGGGATTCCTCACCAGCGGGTTCTTaGCGCCGCTACCCGCGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GGANKTPNHQDEKRSRDSSPAGS*RRYPRS Trigger: GGAGCGCGGGTAGCGGCGCCAAGAACCCGCTGGTGA...GGAATCCCGGCTCCTTTTCTCGTCTTGGTGGTTCGGTGTTTTGTTCGCTCCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CCA 90 bp | GCTGTTGACAGTTTTGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTTCGCAGCGGCGAAAATaGGCGCGCGAGGTCGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: AVDSFVREFAAAKMGARGSQRRK*AREVER Trigger: CCTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGA...ACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACAAAACTGTCAACAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR TCA 90 bp | GGAGGAGCGAACAAAACACCGAACCACCAAGACGAGAAAAGGAGCCGGGATTCCCCCGGGCGGAGGACTTaGCCTTCTCCTCTCGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: GGANKTPNHQDEKRSRDSPGRRT*PSPLGA Trigger: TGCTCCGAGAGGAGAAGGTCAAGTCCTCCGCCCGGG...GGAATCCCGGCTCCTTTTCTCGTCTTGGTGGTTCGGTGTTTTGTTCGCTCCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR TCA 90 bp | CGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGGGCCGCGCCTGTTTAACGCCTGGACCTaGGAATCTCTACACCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: REFAAAKMGARGREGPRLFNAWT*ESLHLK Trigger: TTTGAGGTGTAGAGATTCTCAGGTCCAGGCGTTAAA...CAGGCGCGGCCCCTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR GCA 90 bp | GCTGTTGACAGTTTTGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGACTTTATAACTCCTaGGCCGCCGCGGTAGCCGCG | + |
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Preference number: 4 (lower is better) Translates to: AVDSFVREFAAAKMGARGRLYNS*AAAVAA Trigger: CGCGGCTACCGCGGCGGCGCAGGAGTTATAAAGTCG...ACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACAAAACTGTCAACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CCA 90 bp | GTTGACAGTTTTGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGAGGGGCCGCGCCTaGAGGAGCGAACAAAACACC | + |
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Preference number: 4 (lower is better) Translates to: VDSFVREFAAAKMGARGRERGRA*RSEQNT Trigger: GGTGTTTTGTTCGCTCCTCCAGGCGCGGCCCCTCTC...TCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACAAAACTGTCAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR TCA 90 bp | GACAGTTTTGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGCGCGCCCGGGCTGTTaGCAGTTTTGTCCGAGAATT | + |
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Preference number: 4 (lower is better) Translates to: DSFVREFAAAKMGARGREARPGC*QFCPRI Trigger: AATTCTCGGACAAAACTGTCAACAGCCCGGGCGCGC...CTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACAAAACTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CCA 90 bp | CTCTACACCTCAAAAAGGCTTAGTTGTTTTTCATCTGCCAAACGTCAAGGGAGCGGCCGCGGCGTTGGGTaGGAGCAGCGGCTGCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: LYTSKRLSCFSSAKRQGSGRGVG*EQRLPL Trigger: AAGCGGCAGCCGCTGCTCCCACCCAACGCCGCGGCC...GCTCCCTTGACGTTTGGCAGATGAAAAACAACTAAGCCTTTTTGAGGTGTAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS TCA 90 bp | GCGCGGCGGCGGCGGCAGCGGCGGCCGGGCCCAAGCTGCCCCCGATaGTGCTCTCGATGGAGAAGGGCGAGCGCGCCAGCGCTGAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: ARRRRQRRPGPSCPR*CSRWRRASAPALRR Trigger: GCGCCTCAGCGCTGGCGCGCTCGCCCTTCTCCATCGAGAGCATCATCGGGGGCAGCTTGGGCCCGGCCGCCGCTGCCGCCGCCGCCGCGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS TCA 90 bp | CTGCGCTCCCTGGGCTCCGCTCGCGCCCGGCCCGGGCGGAGGACTTaGCCTTCTCCTCTCGGAGCAGCTTTTGCCCCGTCAGCTGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: LRSLGSARARPGRRT*PSPLGAAFAPSAEE Trigger: CTCCTCAGCTGACGGGGCAAAAGCTGCTCCGAGAGGAGAAGGTCAAGTCCTCCGCCCGGGCCGGGCGCGAGCGGAGCCCAGGGAGCGCAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS GCA 90 bp | GCGGGGCCCGGGCGGGCGAATCAGAACGCCAGGCGCCCAGGAACGTaGGGGACGGGTGAGAGTCTAAGAACAGAGCTCGGCGAGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: AGPGRANQNARRPGT*GTGESLRTELGEAR Trigger: CCTGGCCTCGCCGAGCTCTGTTCTTAGACTCTCACCCGTCCCGCACGTTCCTGGGCGCCTGGCGTTCTGATTCGCCCGCCCGGGCCCCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS GCA 90 bp | GGCTACCAGGCGCGCCAGCAGTGTCTGTGCCGTTTGGATTCCGCCTaGCAACCCCTCTCCACCCGGGGCGGCGCGTGGAGTCCGGACGTT | + |
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Preference number: 5 (lower is better) Translates to: GYQARQQCLCRLDSA*QPLSTRGGAWSPDV Trigger: AACGTCCGGACTCCACGCGCCGCCCCGGGTGGAGAGGGGTTGGCAGGCGGAATCCAAACGGCACAGACACTGCTGGCGCGCCTGGTAGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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| CDS-3UTR CAA 90 bp | GGGCGCGCGAGGTCGAGAGGGGCCGCGCCTGGAGGAGCGAACAAAACACCGAACTTCACCAGCGGGTTCTaGGCGCCGCTACCCGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: GRARSRGAAPGGANKTPNFTSGF*APLPAL Trigger: GAGCGCGGGTAGCGGCGCCAAGAACCCGCTGGTGAA...GTTCGGTGTTTTGTTCGCTCCTCCAGGCGCGGCCCCTCTCGACCTCGCGCGCCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CAA 90 bp | TGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGGGCCGCGAGCAGCGGCTGCCGCTaGAAGCGCTTCCTCCGGCGC | + |
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Preference number: 5 (lower is better) Translates to: CPRIRSGENGRARSRGAASSGCR*KRFLRR Trigger: GCGCCGGAGGAAGCGCTTCAAGCGGCAGCCGCTGCT...CGCGGCCCCTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CAA 90 bp | CGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGGGCCGCGCCTGGGACAGGGCAGTCCCTaGGTGCAGAGTCCCCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: REFAAAKMGARGREGPRLGQGSP*VQSPQG Trigger: GCCTTGGGGACTCTGCACCAAGGGACTGCCCTGTCC...CAGGCGCGGCCCCTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS CCA 90 bp | GCGTTACAGAAGGCTACCAGGCGCGCCAGCAGTGTCTGTGCCGTTTaGATTCCGCCTGCCAACCCCTCTCCACCCGGGGCGGCGCGTGGA | + |
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Preference number: 5 (lower is better) Translates to: ALQKATRRASSVCAV*IPPANPSPPGAARG Trigger: TCCACGCGCCGCCCCGGGTGGAGAGGGGTTGGCAGGCGGAATCCAAACGGCACAGACACTGCTGGCGCGCCTGGTAGCCTTCTGTAACGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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| CDS GCA 90 bp | GATGCGTGCGTTACAGAAGGCTACCAGGCGCGCCAGCAGTGTCTGTaGCGTTTGGATTCCGCCTGCCAACCCCTCTCCACCCGGGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: DACVTEGYQARQQCL*RLDSACQPLSTRGG Trigger: GCCGCCCCGGGTGGAGAGGGGTTGGCAGGCGGAATCCAAACGGCACAGACACTGCTGGCGCGCCTGGTAGCCTTCTGTAACGCACGCATC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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| CDS CCA 90 bp | CGTTTGGATTCCGCCTGCCAACCCCTCTCCACCCGGGGCGGCGCGTaGAGTCCGGACGTTCTCGGGTTCAATGACTCCTCTCTCTTAGCC | + |
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Preference number: 5 (lower is better) Translates to: RLDSACQPLSTRGGA*SPDVLGFNDSSLLA Trigger: GGCTAAGAGAGAGGAGTCATTGAACCCGAGAACGTCCGGACTCCACGCGCCGCCCCGGGTGGAGAGGGGTTGGCAGGCGGAATCCAAACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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| CDS-3UTR CAA 90 bp | GCGAGGTCGAGAGGGGCCGCGCCTGGAGGAGCGAACAAAACACCGAACCACCAAGGCGCGCCCGGGCTGTaGACAGTTTTGTCCGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: ARSRGAAPGGANKTPNHQGAPGL*TVLSEN Trigger: ATTCTCGGACAAAACTGTCAACAGCCCGGGCGCGCC...TTGGTGGTTCGGTGTTTTGTTCGCTCCTCCAGGCGCGGCCCCTCTCGACCTCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CAA 90 bp | GACAGTTTTGTCCGAGAATTCGCAGCGGCGAAAATGGGCGCGCGAGGTCGAGAGGGGCTGTTGACAGTTTaGTCCGAGAATTCGCAGCGG | + |
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Preference number: 5 (lower is better) Translates to: DSFVREFAAAKMGARGREGLLTV*SENSQR Trigger: CCGCTGCGAATTCTCGGACAAAACTGTCAACAGCCC...CTCTCGACCTCGCGCGCCCATTTTCGCCGCTGCGAATTCTCGGACAAAACTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS-3UTR CAA 90 bp | CTCTACACCTCAAAAAGGCTTAGTTGTTTTTCATCTGCCAAACGTCAAGGGAGCCTCTCGGAGCAGCTTTaGCCCCGTCAGCTGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LYTSKRLSCFSSAKRQGSLSEQL*PRQLRR Trigger: CCTCCTCAGCTGACGGGGCAAAAGCTGCTCCGAGAG...GCTCCCTTGACGTTTGGCAGATGAAAAACAACTAAGCCTTTTTGAGGTGTAGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS CCA 72 bp | GACTGCGGCTGCCGGAGCTGCGCCGGGGCTGCCGGGTaGCGGCGGAGTCTCGCGCGCCGACTTTATAACTCC | + |
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Preference number: 6 (lower is better) Translates to: DCGCRSCAGAAG*RRSLARRLYNS Trigger: GGAGTTATAAAGTCGGCGCGCGAGACTCCGCCGCCACCCGGCAGCCCCGGCGCAGCTCCGGCAGCCGCAGTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS CCA 72 bp | GCGCAGCAGCAGAGACTCGGCGGCCGCGGCGTTGGGTaGGAGCAGCGGCTGCCGCTTGAAGCGCTTCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: AQQQRLGGRGVG*EQRLPLEALPP Trigger: CGGAGGAAGCGCTTCAAGCGGCAGCCGCTGCTCCCACCCAACGCCGCGGCCGCCGAGTCTCTGCTGCTGCGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS GCA 72 bp | TGGCGGCGGAGTCTCGCGCGCCGACTTTATAACTCCTaGGCCGCCGCGGTAGCCGCGCGGATGCTGCGCTCC | + |
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Preference number: 6 (lower is better) Translates to: WRRSLARRLYNS*AAAVAARMLRS Trigger: GGAGCGCAGCATCCGCGCGGCTACCGCGGCGGCGCAGGAGTTATAAAGTCGGCGCGCGAGACTCCGCCGCCA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS TCA 72 bp | CTGGGCTCCGCTCGCGCCCGGCCCGGGCGGAGGACTTaGCCTTCTCCTCTCGGAGCAGCTTTTGCCCCGTCA | + |
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Preference number: 6 (lower is better) Translates to: LGSARARPGRRT*PSPLGAAFAPS Trigger: TGACGGGGCAAAAGCTGCTCCGAGAGGAGAAGGTCAAGTCCTCCGCCCGGGCCGGGCGCGAGCGGAGCCCAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS GCA 72 bp | GCGCGCCAGCAGTGTCTGTGCCGTTTGGATTCCGCCTaGCAACCCCTCTCCACCCGGGGCGGCGCGTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: ARQQCLCRLDSA*QPLSTRGGAWS Trigger: ACTCCACGCGCCGCCCCGGGTGGAGAGGGGTTGGCAGGCGGAATCCAAACGGCACAGACACTGCTGGCGCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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| CDS CAA 90 bp | TGCGTTACAGAAGGCTACCAGGCGCGCCAGCAGTGTCTGTGCCGTTaGGATTCCGCCTGCCAACCCCTCTCCACCCGGGGCGGCGCGTGG | + |
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Preference number: 6 (lower is better) Translates to: CVTEGYQARQQCLCR*DSACQPLSTRGGAW Trigger: CCACGCGCCGCCCCGGGTGGAGAGGGGTTGGCAGGCGGAATCCAAACGGCACAGACACTGCTGGCGCGCCTGGTAGCCTTCTGTAACGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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| CDS CAA 72 bp | GAAGGCTACCAGGCGCGCCAGCAGTGTCTGTGCCGTTaGGATTCCGCCTGCCAACCCCTCTCCACCCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: EGYQARQQCLCR*DSACQPLSTRG Trigger: GCCCCGGGTGGAGAGGGGTTGGCAGGCGGAATCCAAACGGCACAGACACTGCTGGCGCGCCTGGTAGCCTTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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| CDS TCA 72 bp | TCAGAACGCCAGGCGCCCAGGAACGTGCGGGACGGGTaGGAGTCTAAGAACAGAGCTCGGCGAGGCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: SERQAPRNVRDG*ESKNRARRGQG Trigger: GCCCTGGCCTCGCCGAGCTCTGTTCTTAGACTCTCACCCGTCCCGCACGTTCCTGGGCGCCTGGCGTTCTGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS GCA 72 bp | GGGCGGGCGAATCAGAACGCCAGGCGCCCAGGAACGTaGGGGACGGGTGAGAGTCTAAGAACAGAGCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: GRANQNARRPGT*GTGESLRTELG Trigger: GCCGAGCTCTGTTCTTAGACTCTCACCCGTCCCGCACGTTCCTGGGCGCCTGGCGTTCTGATTCGCCCGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS GCA 72 bp | GTTACAGAAGGCTACCAGGCGCGCCAGCAGTGTCTGTaGCGTTTGGATTCCGCCTGCCAACCCCTCTCCACC | + |
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Preference number: 6 (lower is better) Translates to: VTEGYQARQQCL*RLDSACQPLST Trigger: GGTGGAGAGGGGTTGGCAGGCGGAATCCAAACGGCACAGACACTGCTGGCGCGCCTGGTAGCCTTCTGTAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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| CDS GCA 72 bp | GTAAAGTTCTCGACACTGGACAGGGCAGTCCCTTGGTaGAGAGTCCCCAAGGCGGCGGACGAGGAGACTGAG | + |
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Preference number: 6 (lower is better) Translates to: VKFSTLDRAVPW*RVPKAADEETE Trigger: CTCAGTCTCCTCGTCCGCCGCCTTGGGGACTCTGCACCAAGGGACTGCCCTGTCCAGTGTCGAGAACTTTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615637.3 |
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| CDS TCA 72 bp | GGGCGGCGCGTGGAGTCCGGACGTTCTCGGGTTCAATaGCTCCTCTCTCTTAGCCGGGCTAGAGTAAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: GRRVESGRSRVQ*LLSLSRARVKV Trigger: TACTTTTACTCTAGCCCGGCTAAGAGAGAGGAGTCATTGAACCCGAGAACGTCCGGACTCCACGCGCCGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513595.1 |
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