Pregenerated sensors for FGF6 (Homo sapiens)
Ensembl gene IDs: ENSG00000111241Ensembl transcript IDs: ENST00000228837.3, ENST00000535390.1, ENST00000543077.1
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACATTGGGATCACCCCCAGAGATGGCATGAAAGGGGCGAGAGAGTaGGGATGGCCACAGCAGGAACGTGGCACGGAGATGACAGGGCTG | + |
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Preference number: 1 (lower is better) Translates to: HIGITPRDGMKGARE*GWPQQERGTEMTGL Trigger: CAGCCCTGTCATCTCCGTGCCACGTTCCTGCTGTGGCCATCCCCACTCTCTCGCCCCTTTCATGCCATCTCTGGGGGTGATCCCAATGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| 3UTR-3UTR TCA 90 bp | GGAACGTGGCACGGAGATGACAGGGCTGATGACGGGAAGCTCAGGAAGGGGCAGGCTGTGGGGTCCTCCTaGCGTAAACTCTCCAGTCAT | + |
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Preference number: 2 (lower is better) Translates to: GTWHGDDRADDGKLRKGQAVGSS*RKLSSH Trigger: ATGACTGGAGAGTTTACGTCAGGAGGACCCCACAGC...CTGCCCCTTCCTGAGCTTCCCGTCATCAGCCCTGTCATCTCCGTGCCACGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| 3UTR-3UTR CCA 90 bp | GATTTATTTGGAACCCAGAGTTGCTCGACTGAAGGCACATTGGGATCACCCCCAGCGAGAGAGTGGGGATaGCCACAGCAGGAACGTGGC | + |
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Preference number: 2 (lower is better) Translates to: DLFGTQSCSTEGTLGSPPAREWG*PQQERG Trigger: GCCACGTTCCTGCTGTGGCCATCCCCACTCTCTCGC...TGGGGGTGATCCCAATGTGCCTTCAGTCGAGCAACTCTGGGTTCCAAATAAATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| 3UTR CCA 72 bp | ATCACCCCCAGAGATGGCATGAAAGGGGCGAGAGAGTaGGGATGGCCACAGCAGGAACGTGGCACGGAGATG | + |
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Preference number: 3 (lower is better) Translates to: ITPRDGMKGARE*GWPQQERGTEM Trigger: CATCTCCGTGCCACGTTCCTGCTGTGGCCATCCCCACTCTCTCGCCCCTTTCATGCCATCTCTGGGGGTGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| 3UTR CCA 72 bp | GGCAGTGTGAAGGGAGGGAGGAAACTCGGGAGGCTGTaGGGTCCTCCTGACGTAAACTCTCCAGTCATCTTC | + |
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Preference number: 3 (lower is better) Translates to: GSVKGGRKLGRL*GPPDVNSPVIF Trigger: GAAGATGACTGGAGAGTTTACGTCAGGAGGACCCCACAGCCTCCCGAGTTTCCTCCCTCCCTTCACACTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| 3UTR CCA 72 bp | TATTTGGAACCCAGAGTTGCTCGACTGAAGGCACATTaGGATCACCCCCAGAGATGGCATGAAAGGGGCGAG | + |
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Preference number: 3 (lower is better) Translates to: YLEPRVARLKAH*DHPQRWHERGE Trigger: CTCGCCCCTTTCATGCCATCTCTGGGGGTGATCCCAATGTGCCTTCAGTCGAGCAACTCTGGGTTCCAAATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR CCA 90 bp | GCCACAGCAGGAACGTGGCACGGAGATGACAGGGCTGATGACGGGAAGCTCAGGAAAGGGGCGAGAGAGTaGGGATGGCCACAGCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: ATAGTWHGDDRADDGKLRKGARE*GWPQQE Trigger: TTCCTGCTGTGGCCATCCCCACTCTCTCGCCCCTTT...CCTGAGCTTCCCGTCATCAGCCCTGTCATCTCCGTGCCACGTTCCTGCTGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR CCA 90 bp | GCCACAGCAGGAACGTGGCACGGAGATGACAGGGCTGATGACGGGAAGCTCAGGCGACTGAAGGCACATTaGGATCACCCCCAGAGATGG | + |
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Preference number: 4 (lower is better) Translates to: ATAGTWHGDDRADDGKLRRLKAH*DHPQRW Trigger: CCATCTCTGGGGGTGATCCCAATGTGCCTTCAGTCG...CCTGAGCTTCCCGTCATCAGCCCTGTCATCTCCGTGCCACGTTCCTGCTGTGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR TCA 90 bp | GAACCCAGAGTTGCTCGACTGAAGGCACATTGGGATCACCCCCAGAGATGGCATCCCCCAGAGATGGCATaGAAGGGGCGAGAGAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: EPRVARLKAHWDHPQRWHPPEMA*KGRESG Trigger: CCCACTCTCTCGCCCCTTTCATGCCATCTCTGGGGG...ATGCCATCTCTGGGGGTGATCCCAATGTGCCTTCAGTCGAGCAACTCTGGGTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR CCA 90 bp | ACGTGGCACGGAGATGACAGGGCTGATGACGGGAAGCTCAGGAAGGGGCAGTGTAAACTCGGGAGGCTGTaGGGTCCTCCTGACGTAAAC | + |
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Preference number: 4 (lower is better) Translates to: TWHGDDRADDGKLRKGQCKLGRL*GPPDVN Trigger: GTTTACGTCAGGAGGACCCCACAGCCTCCCGAGTTT...ACACTGCCCCTTCCTGAGCTTCCCGTCATCAGCCCTGTCATCTCCGTGCCACGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR TCA 90 bp | GCTCGACTGAAGGCACATTGGGATCACCCCCAGAGATGGCATGAAAGGGGCGAGGCTGTGGGGTCCTCCTaGCGTAAACTCTCCAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: ARLKAHWDHPQRWHERGEAVGSS*RKLSSH Trigger: ATGACTGGAGAGTTTACGTCAGGAGGACCCCACAGC...CTCGCCCCTTTCATGCCATCTCTGGGGGTGATCCCAATGTGCCTTCAGTCGAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR CCA 90 bp | GCCACAGCAGGAACGTGGCACGGAGATGACAGGGCTGATGACGGGAAGCTCAGGTTCCTTTACTGTTCATaGCAACGAAGAGGGCACTTC | + |
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Preference number: 4 (lower is better) Translates to: ATAGTWHGDDRADDGKLRFLYCS*QRRGHF Trigger: GAAGTGCCCTCTTCGTTGCCATGAACAGTAAAGGAA...CCTGAGCTTCCCGTCATCAGCCCTGTCATCTCCGTGCCACGTTCCTGCTGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR CCA 90 bp | GATTTATTTGGAACCCAGAGTTGCTCGACTGAAGGCACATTGGGATCACCCCCAGCCACAGCAGGAACGTaGCACGGAGATGACAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: DLFGTQSCSTEGTLGSPPATAGT*HGDDRA Trigger: AGCCCTGTCATCTCCGTGCCACGTTCCTGCTGTGGC...TGGGGGTGATCCCAATGTGCCTTCAGTCGAGCAACTCTGGGTTCCAAATAAATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR TCA 90 bp | GATTTATTTGGAACCCAGAGTTGCTCGACTGAAGGCACATTGGGATCACCCCCACCAGAGTTGCTCGACTaGAGGCACATTGGGATCACC | + |
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Preference number: 4 (lower is better) Translates to: DLFGTQSCSTEGTLGSPPPELLD*RHIGIT Trigger: GGTGATCCCAATGTGCCTTCAGTCGAGCAACTCTGG...TGGGGGTGATCCCAATGTGCCTTCAGTCGAGCAACTCTGGGTTCCAAATAAATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS-3UTR GCA 90 bp | GAACCCAGAGTTGCTCGACTGAAGGCACATTGGGATCACCCCCAGAGATGGCATTTTGGAACCCAGAGTTaGTCGACTGAAGGCACATTG | + |
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Preference number: 4 (lower is better) Translates to: EPRVARLKAHWDHPQRWHFGTQS*STEGTL Trigger: CAATGTGCCTTCAGTCGAGCAACTCTGGGTTCCAAA...ATGCCATCTCTGGGGGTGATCCCAATGTGCCTTCAGTCGAGCAACTCTGGGTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS GCA 90 bp | TGGCACGGGTGCCTGCAGGCGAGGGCACCACCATGCCCACTAGGATaGCTAGGAAGACGAGAGCCCACAGCGTGCCCTGCAGACGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: WHGCLQARAPPCPLG*LGRREPTACPADVL Trigger: CAGGACGTCTGCAGGGCACGCTGTGGGCTCTCGTCTTCCTAGGCATCCTAGTGGGCATGGTGGTGCCCTCGCCTGCAGGCACCCGTGCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS GCA 90 bp | GCAGCGTGTTGTTGGCACGGGTGCCTGCAGGCGAGGGCACCACCATaGCCACTAGGATGCCTAGGAAGACGAGAGCCCACAGCGTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: AACCWHGCLQARAPP*PLGCLGRREPTACP Trigger: AGGGCACGCTGTGGGCTCTCGTCTTCCTAGGCATCCTAGTGGGCATGGTGGTGCCCTCGCCTGCAGGCACCCGTGCCAACAACACGCTGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS GCA 90 bp | ATGCCCACTAGGATGCCTAGGAAGACGAGAGCCCACAGCGTGCCCTaGAGACGTCCTGCTCCCCGGGACATAGTGATGAACAGTTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: MPTRMPRKTRAHSVP*RRPAPRDIVMNSFC Trigger: ACAGAAACTGTTCATCACTATGTCCCGGGGAGCAGGACGTCTGCAGGGCACGCTGTGGGCTCTCGTCTTCCTAGGCATCCTAGTGGGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS-3UTR CAA 90 bp | CTCGGGAGGCTGTGGGGTCCTCCTGACGTAAACTCTCCAGTCATCTTCTTTCTTTCGACTGAAGGCACATaGGGATCACCCCCAGAGATG | + |
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Preference number: 5 (lower is better) Translates to: LGRLWGPPDVNSPVIFFLSTEGT*GSPPEM Trigger: CATCTCTGGGGGTGATCCCAATGTGCCTTCAGTCGA...AAGAAAGAAGATGACTGGAGAGTTTACGTCAGGAGGACCCCACAGCCTCCCGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543077.1 |
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| CDS GCA 90 bp | CCGGGACATAGTGATGAACAGTTTCTGTCCCAGGGCCATCCACCTTaGCTCTCAGGCACGTGGTCAGAATTAATGGCCCTAAAAATACCG | + |
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Preference number: 5 (lower is better) Translates to: PGHSDEQFLSQGHPP*LSGTWSELMALKIP Trigger: CGGTATTTTTAGGGCCATTAATTCTGACCACGTGCCTGAGAGGCAAGGTGGATGGCCCTGGGACAGAAACTGTTCATCACTATGTCCCGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS CCA 90 bp | CTTCTTGGAAGCTGGGCGTTGCGTACAATCTTCCTTTACTGTTCATaGCAACGAAGAGGGCACTTCTCACTCCAAAGAGACTCACCACGC | + |
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Preference number: 5 (lower is better) Translates to: LLGSWALRTIFLYCS*QRRGHFSLQRDSPR Trigger: GCGTGGTGAGTCTCTTTGGAGTGAGAAGTGCCCTCTTCGTTGCCATGAACAGTAAAGGAAGATTGTACGCAACGCCCAGCTTCCAAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS TCA 90 bp | TCGCTGGTGCAAAATTTCAATCGAACAGATGATGCTTTAAATCTGTaGGCCTTCTTTTGTGGGTCCTTAGATCCTGGGAAGGAAATGAGT | + |
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Preference number: 5 (lower is better) Translates to: SLVQNFNRTDDALNL*AFFCGSLDPGKEMS Trigger: ACTCATTTCCTTCCCAGGATCTAAGGACCCACAAAAGAAGGCTCACAGATTTAAAGCATCATCTGTTCGATTGAAATTTTGCACCAGCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS CAA 90 bp | GACCTGGACAGCAGGGTGCCCCAGCCCCTCGAGTCCAGCAGCGTGTaGTTGGCACGGGTGCCTGCAGGCGAGGGCACCACCATGCCCACT | + |
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Preference number: 6 (lower is better) Translates to: DLDSRVPQPLESSSV*LARVPAGEGTTMPT Trigger: AGTGGGCATGGTGGTGCCCTCGCCTGCAGGCACCCGTGCCAACAACACGCTGCTGGACTCGAGGGGCTGGGGCACCCTGCTGTCCAGGTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS GCA 72 bp | TGCCTGCAGGCGAGGGCACCACCATGCCCACTAGGATaGCTAGGAAGACGAGAGCCCACAGCGTGCCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: CLQARAPPCPLG*LGRREPTACPA Trigger: TGCAGGGCACGCTGTGGGCTCTCGTCTTCCTAGGCATCCTAGTGGGCATGGTGGTGCCCTCGCCTGCAGGCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS GCA 72 bp | AGGATGCCTAGGAAGACGAGAGCCCACAGCGTGCCCTaGAGACGTCCTGCTCCCCGGGACATAGTGATGAAC | + |
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Preference number: 6 (lower is better) Translates to: RMPRKTRAHSVP*RRPAPRDIVMN Trigger: GTTCATCACTATGTCCCGGGGAGCAGGACGTCTGCAGGGCACGCTGTGGGCTCTCGTCTTCCTAGGCATCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS GCA 72 bp | GAAGACGAGAGCCCACAGCGTGCCCTGCAGACGTCCTaGTCCCCGGGACATAGTGATGAACAGTTTCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: EDESPQRALQTS*SPGHSDEQFLS Trigger: GGACAGAAACTGTTCATCACTATGTCCCGGGGAGCAGGACGTCTGCAGGGCACGCTGTGGGCTCTCGTCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS GCA 72 bp | GGGACACCTTGCTGCCCCGCTTTACCCGTCCGTATTTaGTCAGGGCAATGTAGGTCCCTTGGTACAAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: GTPCCPALPVRI*SGQCRSLGTSL Trigger: CAGACTTGTACCAAGGGACCTACATTGCCCTGAGCAAATACGGACGGGTAAAGCGGGGCAGCAAGGTGTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS TCA 72 bp | GCAGGGGCTTATTTTTGGAAGGCAGATGAAGGCTGCTaGCATGAAACCAAAGCCTCCATCGGGCACTCGGGT | + |
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Preference number: 6 (lower is better) Translates to: AGAYFWKADEGC*HETKASIGHSG Trigger: ACCCGAGTGCCCGATGGAGGCTTTGGTTTCATGTCAGCAGCCTTCATCTGCCTTCCAAAAATAAGCCCCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS GCA 72 bp | AGTGATGAACAGTTTCTGTCCCAGGGCCATCCACCTTaGCTCTCAGGCACGTGGTCAGAATTAATGGCCCTA | + |
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Preference number: 6 (lower is better) Translates to: SDEQFLSQGHPP*LSGTWSELMAL Trigger: TAGGGCCATTAATTCTGACCACGTGCCTGAGAGGCAAGGTGGATGGCCCTGGGACAGAAACTGTTCATCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS CCA 72 bp | AGCTGGGCGTTGCGTACAATCTTCCTTTACTGTTCATaGCAACGAAGAGGGCACTTCTCACTCCAAAGAGAC | + |
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Preference number: 6 (lower is better) Translates to: SWALRTIFLYCS*QRRGHFSLQRD Trigger: GTCTCTTTGGAGTGAGAAGTGCCCTCTTCGTTGCCATGAACAGTAAAGGAAGATTGTACGCAACGCCCAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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| CDS GCA 72 bp | TTCCAAGAGAACATAGATTTATTTGGAACCCAGAGTTaGTCGACTGAAGGCACATTGGGATCACCCCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: FQENIDLFGTQS*STEGTLGSPPE Trigger: CTCTGGGGGTGATCCCAATGTGCCTTCAGTCGAGCAACTCTGGGTTCCAAATAAATCTATGTTCTCTTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000535390.1 |
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| CDS CAA 72 bp | ATGCAAGTTAATGAGAGCATGGGGACTGCATCTACCTaGTTCACATGTGTATCCCAGAAACCTAGCCTAGTC | + |
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Preference number: 6 (lower is better) Translates to: MQVNESMGTAST*FTCVSQKPSLV Trigger: GACTAGGCTAGGTTTCTGGGATACACATGTGAACAAGGTAGATGCAGTCCCCATGCTCTCATTAACTTGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000535390.1 |
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| CDS TCA 72 bp | GAATTCTTCGCTGGTGCAAAATTTCAATCGAACAGATaGTGCTTTAAATCTGTGAGCCTTCTTTTGTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: EFFAGAKFQSNR*CFKSVSLLLWV Trigger: GACCCACAAAAGAAGGCTCACAGATTTAAAGCATCATCTGTTCGATTGAAATTTTGCACCAGCGAAGAATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228837.3 |
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