Pregenerated sensors for FCHO2-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000272081Ensembl transcript IDs: ENST00000606587.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTTCGGGTCACATTCCGCTCCCGCAGGCCTGCGGGCCGCCCCAGCTaGTTTGTTCCCGGCGTGTTAGAGGTCAGAGGCCGAGGCCGCACT | + |
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Preference number: 5 (lower is better) Translates to: FRVTFRSRRPAGRPS*FVPGVLEVRGRGRT Trigger: AGTGCGGCCTCGGCCTCTGACCTCTAACACGCCGGGAACAAACCAGCTGGGGCGGCCCGCAGGCCTGCGGGAGCGGAATGTGACCCGAAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS GCA 90 bp | TTTGTTCCCGGCGTGTTAGAGGTCAGAGGCCGAGGCCGCACTCAGTaGCTGGGTCTCGCGCAGCTCCAGGGCTCTCAGGCGACACTGGGC | + |
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Preference number: 5 (lower is better) Translates to: FVPGVLEVRGRGRTQ*LGLAQLQGSQATLG Trigger: GCCCAGTGTCGCCTGAGAGCCCTGGAGCTGCGCGAGACCCAGGCACTGAGTGCGGCCTCGGCCTCTGACCTCTAACACGCCGGGAACAAA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS TCA 90 bp | CCGGCTTCGGAAAGTTTTGTTTTGGTTCAAGGAAAGGCGCCCTGTTaGCCAAAGGCTTCTCAGTCTCCTCCGGGTGGCCAGCGGCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: PASESFVLVQGKAPC*PKASQSPPGGQRPS Trigger: ACTTGGCCGCTGGCCACCCGGAGGAGACTGAGAAGCCTTTGGTCAACAGGGCGCCTTTCCTTGAACCAAAACAAAACTTTCCGAAGCCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS CCA 90 bp | AGGCGACACTGGGCGTTTCCTTTCCGGCTTCGGAAAGTTTTGTTTTaGTTCAAGGAAAGGCGCCCTGTTGACCAAAGGCTTCTCAGTCTC | + |
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Preference number: 5 (lower is better) Translates to: RRHWAFPFRLRKVLF*FKERRPVDQRLLSL Trigger: GAGACTGAGAAGCCTTTGGTCAACAGGGCGCCTTTCCTTGAACCAAAACAAAACTTTCCGAAGCCGGAAAGGAAACGCCCAGTGTCGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS CCA 90 bp | TTCTTTTTCCAAAATGTTCAAGTTGCTGAAGAGAACTATGGACTATaGGTCAGGAAGTCCGTCGGTTTCGGGTCACATTCCGCTCCCGCA | + |
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Preference number: 5 (lower is better) Translates to: FFFQNVQVAEENYGL*VRKSVGFGSHSAPA Trigger: TGCGGGAGCGGAATGTGACCCGAAACCGACGGACTTCCTGACCCATAGTCCATAGTTCTCTTCAGCAACTTGAACATTTTGGAAAAAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS CCA 72 bp | ACATTCCGCTCCCGCAGGCCTGCGGGCCGCCCCAGCTaGTTTGTTCCCGGCGTGTTAGAGGTCAGAGGCCGA | + |
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Preference number: 6 (lower is better) Translates to: TFRSRRPAGRPS*FVPGVLEVRGR Trigger: TCGGCCTCTGACCTCTAACACGCCGGGAACAAACCAGCTGGGGCGGCCCGCAGGCCTGCGGGAGCGGAATGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS CAA 90 bp | GCTCTCAGGCGACACTGGGCGTTTCCTTTCCGGCTTCGGAAAGTTTaGTTTTGGTTCAAGGAAAGGCGCCCTGTTGACCAAAGGCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: ALRRHWAFPFRLRKV*FWFKERRPVDQRLL Trigger: GAGAAGCCTTTGGTCAACAGGGCGCCTTTCCTTGAACCAAAACAAAACTTTCCGAAGCCGGAAAGGAAACGCCCAGTGTCGCCTGAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS TCA 72 bp | GAAAGTTTTGTTTTGGTTCAAGGAAAGGCGCCCTGTTaGCCAAAGGCTTCTCAGTCTCCTCCGGGTGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: ESFVLVQGKAPC*PKASQSPPGGQ Trigger: CTGGCCACCCGGAGGAGACTGAGAAGCCTTTGGTCAACAGGGCGCCTTTCCTTGAACCAAAACAAAACTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS CAA 72 bp | CGACACTGGGCGTTTCCTTTCCGGCTTCGGAAAGTTTaGTTTTGGTTCAAGGAAAGGCGCCCTGTTGACCAA | + |
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Preference number: 6 (lower is better) Translates to: RHWAFPFRLRKV*FWFKERRPVDQ Trigger: TTGGTCAACAGGGCGCCTTTCCTTGAACCAAAACAAAACTTTCCGAAGCCGGAAAGGAAACGCCCAGTGTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS CCA 72 bp | TGGGCGTTTCCTTTCCGGCTTCGGAAAGTTTTGTTTTaGTTCAAGGAAAGGCGCCCTGTTGACCAAAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: WAFPFRLRKVLF*FKERRPVDQRL Trigger: AAGCCTTTGGTCAACAGGGCGCCTTTCCTTGAACCAAAACAAAACTTTCCGAAGCCGGAAAGGAAACGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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| CDS CAA 90 bp | GGTCGTGGCATGTTAAGACTTGTTTCTTTTTCCAAAATGTTCAAGTaGCTGAAGAGAACTATGGACTATGGGTCAGGAAGTCCGTCGGTT | + |
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Preference number: 6 (lower is better) Translates to: GRGMLRLVSFSKMFK*LKRTMDYGSGSPSV Trigger: AACCGACGGACTTCCTGACCCATAGTCCATAGTTCTCTTCAGCAACTTGAACATTTTGGAAAAAGAAACAAGTCTTAACATGCCACGACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000606587.1 |
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