Pregenerated sensors for FAM230E (Homo sapiens)

Ensembl gene IDs: ENSG00000182824

Ensembl transcript IDs: ENST00000342888.3, ENST00000611876.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GAAGCCCACATTCAAGGTGTCCAAAGGCCTGGCTCCTGGAGGCTCTaGAGGAGAGCCTGTTCCCTGTCTCTCAGCTTCTGCCGGTTGCCA	+
Preference number: 5 (lower is better) Translates to: EAHIQGVQRPGSWRL*RRACSLSLSFCRLP Trigger: TGGCAACCGGCAGAAGCTGAGAGACAGGGAACAGGCTCTCCTCCAGAGCCTCCAGGAGCCAGGCCTTTGGACACCTTGAATGTGGGCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000342888.3 ENST00000611876.1
CDS CCA 90 bp	GGTCTCCCAGAAGCCCACATTCAAGGTGTCCAAAGGCCTGGCTCCTaGAGGCTCTGGAGGAGAGCCTGTTCCCTGTCTCTCAGCTTCTGC	+
Preference number: 5 (lower is better) Translates to: GLPEAHIQGVQRPGS*RLWRRACSLSLSFC Trigger: GCAGAAGCTGAGAGACAGGGAACAGGCTCTCCTCCAGAGCCTCCAGGAGCCAGGCCTTTGGACACCTTGAATGTGGGCTTCTGGGAGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000342888.3 ENST00000611876.1
CDS CCA 90 bp	AACGCATGGTCTCCCAGAAGCCCACATTCAAGGTGTCCAAAGGCCTaGCTCCTGGAGGCTCTGGAGGAGAGCCTGTTCCCTGTCTCTCAG	+
Preference number: 5 (lower is better) Translates to: NAWSPRSPHSRCPKA*LLEALEESLFPVSQ Trigger: CTGAGAGACAGGGAACAGGCTCTCCTCCAGAGCCTCCAGGAGCCAGGCCTTTGGACACCTTGAATGTGGGCTTCTGGGAGACCATGCGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000342888.3 ENST00000611876.1
CDS CCA 72 bp	GAAGCCCACATTCAAGGTGTCCAAAGGCCTGGCTCCTaGAGGCTCTGGAGGAGAGCCTGTTCCCTGTCTCTC	+
Preference number: 6 (lower is better) Translates to: EAHIQGVQRPGS*RLWRRACSLSL Trigger: GAGAGACAGGGAACAGGCTCTCCTCCAGAGCCTCCAGGAGCCAGGCCTTTGGACACCTTGAATGTGGGCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000342888.3 ENST00000611876.1
CDS CCA 72 bp	TCTCCCAGAAGCCCACATTCAAGGTGTCCAAAGGCCTaGCTCCTGGAGGCTCTGGAGGAGAGCCTGTTCCCT	+
Preference number: 6 (lower is better) Translates to: SPRSPHSRCPKA*LLEALEESLFP Trigger: AGGGAACAGGCTCTCCTCCAGAGCCTCCAGGAGCCAGGCCTTTGGACACCTTGAATGTGGGCTTCTGGGAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000342888.3 ENST00000611876.1
CDS CCA 72 bp	ACTGCCAGAGACTGGGCTGCTTATAACAGAAACGCATaGTCTCCCAGAAGCCCACATTCAAGGTGTCCAAAG	+
Preference number: 6 (lower is better) Translates to: TARDWAAYNRNA*SPRSPHSRCPK Trigger: CTTTGGACACCTTGAATGTGGGCTTCTGGGAGACCATGCGTTTCTGTTATAAGCAGCCCAGTCTCTGGCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000342888.3 ENST00000611876.1
CDS TCA 72 bp	TCAGGGAAAATGAAACCACAATGGTTCAATCTGCTCTaGCCTTTGAAAAACTCAGCACAGATAGTGGCACTT	+
Preference number: 6 (lower is better) Translates to: SGKMKPQWFNLL*PLKNSAQIVAL Trigger: AAGTGCCACTATCTGTGCTGAGTTTTTCAAAGGTCAGAGCAGATTGAACCATTGTGGTTTCATTTTCCCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000342888.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu