Pregenerated sensors for FAM201A (Homo sapiens)
Ensembl gene IDs: ENSG00000204860Ensembl transcript IDs: ENST00000377680.3, ENST00000484285.2, ENST00000665533.1, ENST00000667135.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCAACAATATTGTGGGGGAGGAACAAAGTTCAAGGACTTGCAAAGTaGTCAACGGAACAGAATAGAGAACTCAGAAATAAGAGTGCACAA | + |
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Preference number: 5 (lower is better) Translates to: PTILWGRNKVQGLAK*STEQNRELRNKSAQ Trigger: TTGTGCACTCTTATTTCTGAGTTCTCTATTCTGTTCCGTTGATCACTTTGCAAGTCCTTGAACTTTGTTCCTCCCCCACAATATTGTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000377680.3 ENST00000667135.1 |
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| CDS CCA 90 bp | CACTTACAACTCAACAATAAGAAATCGAACAACCCAATTAGTAAATaGACGAAAGATCTAAAGAGGCTCCCATCAGAGATGGCATATAGA | + |
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Preference number: 5 (lower is better) Translates to: HLQLNNKKSNNPISK*TKDLKRLPSEMAYR Trigger: TCTATATGCCATCTCTGATGGGAGCCTCTTTAGATCTTTCGTCCATTTACTAATTGGGTTGTTCGATTTCTTATTGTTGAGTTGTAAGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000377680.3 ENST00000484285.2 ENST00000665533.1 ENST00000667135.1 |
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| CDS GCA 90 bp | CATGAAAGAAGATATTGGTATGAAGTCGTTACAATTAAAAACTTTTaGTCTGGGAAAGGAAATAAGAGAATGGAGAAACAAGCCACAGAC | + |
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Preference number: 5 (lower is better) Translates to: HERRYWYEVVTIKNF*SGKGNKRMEKQATD Trigger: GTCTGTGGCTTGTTTCTCCATTCTCTTATTTCCTTTCCCAGAGCAAAAGTTTTTAATTGTAACGACTTCATACCAATATCTTCTTTCATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000377680.3 ENST00000484285.2 ENST00000665533.1 ENST00000667135.1 |
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| CDS TCA 72 bp | ACGCATTTCTCCGGTTTAACTGAATCTTTGCATCTGTaGACAACTTCCCATTTTTCTCCCCAGCAACACAGC | + |
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Preference number: 6 (lower is better) Translates to: THFSGLTESLHL*TTSHFSPQQHS Trigger: GCTGTGTTGCTGGGGAGAAAAATGGGAAGTTGTTCACAGATGCAAAGATTCAGTTAAACCGGAGAAATGCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000377680.3 ENST00000484285.2 ENST00000665533.1 ENST00000667135.1 |
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| CDS CAA 72 bp | GAGAATGGAGAAACAAGCCACAGACGGAGAAAATATTaGCAAAACACCTGTCTGGCATCCAGACCATTAAAA | + |
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Preference number: 6 (lower is better) Translates to: ENGETSHRRRKY*QNTCLASRPLK Trigger: TTTTAATGGTCTGGATGCCAGACAGGTGTTTTGCAAATATTTTCTCCGTCTGTGGCTTGTTTCTCCATTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000377680.3 ENST00000484285.2 ENST00000665533.1 ENST00000667135.1 |
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| CDS CCA 72 bp | TGTAGAGAATCTCAAAGCATCAGCCAAAAACCCTTCTaGATTATAGCAAGGTTGCACGGTATAAGGTTAATA | + |
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Preference number: 6 (lower is better) Translates to: CRESQSISQKPF*IIARLHGIRLI Trigger: TATTAACCTTATACCGTGCAACCTTGCTATAATCCAGAAGGGTTTTTGGCTGATGCTTTGAGATTCTCTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000377680.3 ENST00000667135.1 |
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| CDS CAA 72 bp | AAGGGAGCATTAAAATGCCCTTTGCTTGCTGATAACTaGATTTTCTATGTAGAGAATCTCAAAGCATCAGCC | + |
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Preference number: 6 (lower is better) Translates to: KGALKCPLLADN*IFYVENLKASA Trigger: GGCTGATGCTTTGAGATTCTCTACATAGAAAATCAAGTTATCAGCAAGCAAAGGGCATTTTAATGCTCCCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000377680.3 ENST00000667135.1 |
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| CDS CAA 90 bp | AACAGAATAGAGAACTCAGAAATAAGAGTGCACAAACACAGTCAATaGATCTTTTACAAAAAGGTAAAGGCAATTCAAGGGAGAAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: NRIENSEIRVHKHSQ*IFYKKVKAIQGRKG Trigger: ACCCTTTCTCCCTTGAATTGCCTTTACCTTTTTGTAAAAGATCAATTGACTGTGTTTGTGCACTCTTATTTCTGAGTTCTCTATTCTGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000377680.3 ENST00000667135.1 |
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| CDS TCA 72 bp | TGCAATAGATTTCAAAACGCATTTCTCCGGTTTAACTaGATCTTTGCATCTGTGAACAACTTCCCATTTTTC | + |
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Preference number: 6 (lower is better) Translates to: CNRFQNAFLRFN*IFASVNNFPFF Trigger: GAAAAATGGGAAGTTGTTCACAGATGCAAAGATTCAGTTAAACCGGAGAAATGCGTTTTGAAATCTATTGCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000377680.3 ENST00000484285.2 ENST00000665533.1 ENST00000667135.1 |
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| CDS GCA 72 bp | TACAGTACATTATTATTGACTATAGTCATCCTGCTGTaGAATAGATTTCAAAACGCATTTCTCCGGTTTAAC | + |
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Preference number: 6 (lower is better) Translates to: YSTLLLTIVILL*NRFQNAFLRFN Trigger: GTTAAACCGGAGAAATGCGTTTTGAAATCTATTGCACAGCAGGATGACTATAGTCAATAATAATGTACTGTA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000377680.3 ENST00000484285.2 ENST00000665533.1 ENST00000667135.1 |
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