Pregenerated sensors for FAM166A (Homo sapiens)

Ensembl gene IDs: ENSG00000188163

Ensembl transcript IDs: ENST00000344774.6, ENST00000471784.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CTCCCCGGCAGGCAAACAGATAGTCAAGTTGTCCCAGTGGGGGCCTaGCCGGAGGGCCGGCACTCCGTGGGAAAGCTGCTAATGCTCCCA	+
Preference number: 5 (lower is better) Translates to: LPGRQTDSQVVPVGA*PEGRHSVGKLLMLP Trigger: TGGGAGCATTAGCAGCTTTCCCACGGAGTGCCGGCCCTCCGGCCAGGCCCCCACTGGGACAACTTGACTATCTGTTTGCCTGCCGGGGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000471784.2
CDS CCA 72 bp	TCCCCGGCAGGCAAACAGATAGTCAAGTTGTCCCAGTaGGGGCCTGGCCGGAGGGCCGGCACTCCGTGGGAA	+
Preference number: 6 (lower is better) Translates to: SPAGKQIVKLSQ*GPGRRAGTPWE Trigger: TTCCCACGGAGTGCCGGCCCTCCGGCCAGGCCCCCACTGGGACAACTTGACTATCTGTTTGCCTGCCGGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000471784.2
CDS CAA 72 bp	CAAGCTCCCTCCCCGGCAGGCAAACAGATAGTCAAGTaGTCCCAGTGGGGGCCTGGCCGGAGGGCCGGCACT	+
Preference number: 6 (lower is better) Translates to: QAPSPAGKQIVK*SQWGPGRRAGT Trigger: AGTGCCGGCCCTCCGGCCAGGCCCCCACTGGGACAACTTGACTATCTGTTTGCCTGCCGGGGAGGGAGCTTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000471784.2
CDS CCA 72 bp	CCCAGGCCGCTAGCCTGTTCTGAGATGGCCTTGCGTTaGATTAGGTTAGGGTGGTCCAGCTGCGGCAGCCGC	+
Preference number: 6 (lower is better) Translates to: PRPLACSEMALR*IRLGWSSCGSR Trigger: GCGGCTGCCGCAGCTGGACCACCCTAACCTAATCCAACGCAAGGCCATCTCAGAACAGGCTAGCGGCCTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471784.2
CDS CCA 72 bp	AGGCAAACAGATAGTCAAGTTGTCCCAGTGGGGGCCTaGCCGGAGGGCCGGCACTCCGTGGGAAAGCTGCTA	+
Preference number: 6 (lower is better) Translates to: RQTDSQVVPVGA*PEGRHSVGKLL Trigger: TAGCAGCTTTCCCACGGAGTGCCGGCCCTCCGGCCAGGCCCCCACTGGGACAACTTGACTATCTGTTTGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000471784.2
CDS GCA 72 bp	TTCGCTTTGCCCATTCCTTCCAGTAGGCCCTCCGGGTaGTGTTGCCGAATGTCAGGGCGTAGTTGTCCTGCA	+
Preference number: 6 (lower is better) Translates to: FALPIPSSRPSG*CCRMSGRSCPA Trigger: TGCAGGACAACTACGCCCTGACATTCGGCAACAGCACCCGGAGGGCCTACTGGAAGGAATGGGCAAAGCGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000344774.6 ENST00000471784.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu