Pregenerated sensors for FAM155A-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000227248Ensembl transcript IDs: ENST00000449551.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTTTCCTCATGTGTGATAACACAGCACTTGGAATCTACCGGCACATaGCCGCAGTCATTACACAGCTCTGCTGAACATGTCCATGTCACC | + |
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Preference number: 5 (lower is better) Translates to: FSSCVITQHLESTGT*PQSLHSSAEHVHVT Trigger: GGTGACATGGACATGTTCAGCAGAGCTGTGTAATGACTGCGGCCATGTGCCGGTAGATTCCAAGTGCTGTGTTATCACACATGAGGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS CCA 90 bp | CATGGTCTGACATCATCTCTCTCTCTCTCTCTCTTCTTCCTGCACTaGTGGATCTTGTTGAATAAATGCACTTTTCCAAATGTGTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: HGLTSSLSLSLFFLH*WILLNKCTFPNVFK Trigger: CTTGAACACATTTGGAAAAGTGCATTTATTCAACAAGATCCACCAGTGCAGGAAGAAGAGAGAGAGAGAGAGAGATGATGTCAGACCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS TCA 90 bp | CATCTCTCTCTCTCTCTCTCTTCTTCCTGCACTGGTGGATCTTGTTaGATAAATGCACTTTTCCAAATGTGTTCAAGTCACTACCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: HLSLSLSSSCTGGSC*INALFQMCSSHYLS Trigger: AGAAAGGTAGTGACTTGAACACATTTGGAAAAGTGCATTTATTCAACAAGATCCACCAGTGCAGGAAGAAGAGAGAGAGAGAGAGAGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS GCA 90 bp | TCTCTCTCTCTCTTCTTCCTGCACTGGTGGATCTTGTTGAATAAATaGACTTTTCCAAATGTGTTCAAGTCACTACCTTTCTTCCTGCAA | + |
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Preference number: 5 (lower is better) Translates to: SLSLFFLHWWILLNK*TFPNVFKSLPFFLQ Trigger: TTGCAGGAAGAAAGGTAGTGACTTGAACACATTTGGAAAAGTGCATTTATTCAACAAGATCCACCAGTGCAGGAAGAAGAGAGAGAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS TCA 72 bp | TACCGGCACATGGCCGCAGTCATTACACAGCTCTGCTaGACATGTCCATGTCACCCACTGCAGGGCAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: YRHMAAVITQLC*TCPCHPLQGKL Trigger: GAGCTTGCCCTGCAGTGGGTGACATGGACATGTTCAGCAGAGCTGTGTAATGACTGCGGCCATGTGCCGGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS GCA 72 bp | TTACACAGCTCTGCTGAACATGTCCATGTCACCCACTaGAGGGCAAGCTCCAGAATGCAGGGGCTTATCTGG | + |
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Preference number: 6 (lower is better) Translates to: LHSSAEHVHVTH*RASSRMQGLIW Trigger: CCAGATAAGCCCCTGCATTCTGGAGCTTGCCCTGCAGTGGGTGACATGGACATGTTCAGCAGAGCTGTGTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS CCA 72 bp | TGTGTGATAACACAGCACTTGGAATCTACCGGCACATaGCCGCAGTCATTACACAGCTCTGCTGAACATGTC | + |
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Preference number: 6 (lower is better) Translates to: CVITQHLESTGT*PQSLHSSAEHV Trigger: GACATGTTCAGCAGAGCTGTGTAATGACTGCGGCCATGTGCCGGTAGATTCCAAGTGCTGTGTTATCACACA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS CAA 72 bp | CTGCCCAGTTTTTCCTCATGTGTGATAACACAGCACTaGGAATCTACCGGCACATGGCCGCAGTCATTACAC | + |
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Preference number: 6 (lower is better) Translates to: LPSFSSCVITQH*ESTGTWPQSLH Trigger: GTGTAATGACTGCGGCCATGTGCCGGTAGATTCCAAGTGCTGTGTTATCACACATGAGGAAAAACTGGGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS TCA 72 bp | CTCTCTCTCTCTTCTTCCTGCACTGGTGGATCTTGTTaGATAAATGCACTTTTCCAAATGTGTTCAAGTCAC | + |
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Preference number: 6 (lower is better) Translates to: LSLSSSCTGGSC*INALFQMCSSH Trigger: GTGACTTGAACACATTTGGAAAAGTGCATTTATTCAACAAGATCCACCAGTGCAGGAAGAAGAGAGAGAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS CAA 90 bp | TCATCTCTCTCTCTCTCTCTCTTCTTCCTGCACTGGTGGATCTTGTaGAATAAATGCACTTTTCCAAATGTGTTCAAGTCACTACCTTTC | + |
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Preference number: 6 (lower is better) Translates to: SSLSLSLFFLHWWIL*NKCTFPNVFKSLPF Trigger: GAAAGGTAGTGACTTGAACACATTTGGAAAAGTGCATTTATTCAACAAGATCCACCAGTGCAGGAAGAAGAGAGAGAGAGAGAGAGATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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| CDS CAA 90 bp | ACATCATCTCTCTCTCTCTCTCTCTTCTTCCTGCACTGGTGGATCTaGTTGAATAAATGCACTTTTCCAAATGTGTTCAAGTCACTACCT | + |
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Preference number: 6 (lower is better) Translates to: TSSLSLSLFFLHWWI*LNKCTFPNVFKSLP Trigger: AGGTAGTGACTTGAACACATTTGGAAAAGTGCATTTATTCAACAAGATCCACCAGTGCAGGAAGAAGAGAGAGAGAGAGAGAGATGATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449551.1 |
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