Pregenerated sensors for FAM138E (Homo sapiens)

Ensembl gene IDs: ENSG00000248893

Ensembl transcript IDs: ENST00000507796.3, ENST00000673593.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCTGGAGGCAGCATGCGTCACTCCCATGCAGAGTCCATTGGCCAATaGTGGCTCCGATGGCCACATCTCACTGCAGGGGCAGCTGGGAAA	+
Preference number: 5 (lower is better) Translates to: PGGSMRHSHAESIGQ*WLRWPHLTAGAAGK Trigger: TTTCCCAGCTGCCCCTGCAGTGAGATGTGGCCATCGGAGCCAGCATTGGCCAATGGACTCTGCATGGGAGTGACGCATGCTGCCTCCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507796.3 ENST00000673593.1
CDS CCA 90 bp	TGGCCAATGCTGGCTCCGATGGCCACATCTCACTGCAGGGGCAGCTaGGAAATACAGTCTGGCTGTCTACCCAGCAGGAAGAGCAGCCAG	+
Preference number: 5 (lower is better) Translates to: WPMLAPMATSHCRGS*EIQSGCLPSRKSSQ Trigger: CTGGCTGCTCTTCCTGCTGGGTAGACAGCCAGACTGTATTTCCCAGCTGCCCCTGCAGTGAGATGTGGCCATCGGAGCCAGCATTGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507796.3 ENST00000673593.1
CDS GCA 90 bp	ATCTATGGTTCTGCCATCACTAATCTGGGTCTTCCACAATTGCCGTaGTCCTTGGAGGTGGGAAGAGCAGGCGGAGGACACGTGGGAGGT	+
Preference number: 5 (lower is better) Translates to: IYGSAITNLGLPQLP*SLEVGRAGGGHVGG Trigger: ACCTCCCACGTGTCCTCCGCCTGCTCTTCCCACCTCCAAGGAGCACGGCAATTGTGGAAGACCCAGATTAGTGATGGCAGAACCATAGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507796.3 ENST00000673593.1
CDS CCA 72 bp	CTGGCTCCGATGGCCACATCTCACTGCAGGGGCAGCTaGGAAATACAGTCTGGCTGTCTACCCAGCAGGAAG	+
Preference number: 6 (lower is better) Translates to: LAPMATSHCRGS*EIQSGCLPSRK Trigger: CTTCCTGCTGGGTAGACAGCCAGACTGTATTTCCCAGCTGCCCCTGCAGTGAGATGTGGCCATCGGAGCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507796.3 ENST00000673593.1
CDS CAA 90 bp	GGTTCTGCCATCACTAATCTGGGTCTTCCACAATTGCCGTGCTCCTaGGAGGTGGGAAGAGCAGGCGGAGGACACGTGGGAGGTTTTAGG	+
Preference number: 6 (lower is better) Translates to: GSAITNLGLPQLPCS*EVGRAGGGHVGGFR Trigger: CCTAAAACCTCCCACGTGTCCTCCGCCTGCTCTTCCCACCTCCAAGGAGCACGGCAATTGTGGAAGACCCAGATTAGTGATGGCAGAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507796.3 ENST00000673593.1
CDS CAA 90 bp	CCTCCCATCTATGGTTCTGCCATCACTAATCTGGGTCTTCCACAATaGCCGTGCTCCTTGGAGGTGGGAAGAGCAGGCGGAGGACACGTG	+
Preference number: 6 (lower is better) Translates to: PPIYGSAITNLGLPQ*PCSLEVGRAGGGHV Trigger: CACGTGTCCTCCGCCTGCTCTTCCCACCTCCAAGGAGCACGGCAATTGTGGAAGACCCAGATTAGTGATGGCAGAACCATAGATGGGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507796.3 ENST00000673593.1
CDS CAA 72 bp	ATCACTAATCTGGGTCTTCCACAATTGCCGTGCTCCTaGGAGGTGGGAAGAGCAGGCGGAGGACACGTGGGA	+
Preference number: 6 (lower is better) Translates to: ITNLGLPQLPCS*EVGRAGGGHVG Trigger: TCCCACGTGTCCTCCGCCTGCTCTTCCCACCTCCAAGGAGCACGGCAATTGTGGAAGACCCAGATTAGTGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507796.3 ENST00000673593.1
CDS CAA 72 bp	TATGGTTCTGCCATCACTAATCTGGGTCTTCCACAATaGCCGTGCTCCTTGGAGGTGGGAAGAGCAGGCGGA	+
Preference number: 6 (lower is better) Translates to: YGSAITNLGLPQ*PCSLEVGRAGG Trigger: TCCGCCTGCTCTTCCCACCTCCAAGGAGCACGGCAATTGTGGAAGACCCAGATTAGTGATGGCAGAACCATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507796.3 ENST00000673593.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu