RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ESX1 (Homo sapiens)

Ensembl gene IDs: ENSG00000123576

Ensembl transcript IDs: ENST00000372588.4

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TTTGTTCACCTACCCACTTCATTTAACAAGCATCTAACGAATTACTaGATGCTGTGCTGTGCACAATTTCTATCTGGCAGGAAAGAACTT +
Preference number: 2 (lower is better)
Translates to: FVHLPTSFNKHLTNY*MLCCAQFLSGRKEL
Trigger: AAGTTCTTTCCTGCCAGATAGAAATTGTGCACAGCACAGCATCAAGTAATTCGTTAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
3UTR-3UTR CAA 90 bp TACAATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACATCTAACGAATTACTaGATGCTGTGCTGTGCACAA +
Preference number: 3 (lower is better)
Translates to: YNYVAYKNNRAFVNFVHLHLTNY*MLCCAQ
Trigger: TTGTGCACAGCACAGCATCAAGTAATTCGTTAGATG...TAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATTGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR TCA 90 bp AACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTAGCAGCTGAAACTGCGTaGACGCGGTGCGGCGGCGGC +
Preference number: 4 (lower is better)
Translates to: NRAFVNFVHLPTSFNKHLAAETA*TRCGGG
Trigger: GCCGCCGCCGCACCGCGTTCACGCAGTTTCAGCTGC...TAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp ATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTGTTGCTCCGGCTCGTaGCCGCCGCCACCCTCACGG +
Preference number: 4 (lower is better)
Translates to: ITGHSLTLFTYPLHLTSICCSGS*PPPPSR
Trigger: CCGTGAGGGTGGCGGCGGCCACGAGCCGGAGCAACA...GATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp TACAATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCCTCCGCCGGCTGTaGCCCCTCCACGGTCGTCTG +
Preference number: 4 (lower is better)
Translates to: YNYVAYKNNRAFVNFVHLPLRRL*PLHGRL
Trigger: CAGACGACCGTGGAGGGGCCACAGCCGGCGGAGGGG...TAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp TTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTAACGAATTACGGCTCCTCCTGCTGTTaGTCCGGCTCGTGGCCGCCG +
Preference number: 4 (lower is better)
Translates to: FVNFVHLPTSFNKHLTNYGSSCC*SGSWPP
Trigger: CGGCGGCCACGAGCCGGAGCAACAGCAGGAGGAGCC...GTAATTCGTTAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp ATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCGGCTCCTCCTGCTGTTaGTCCGGCTTGGTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: ITGHSLTLFTYPLHLTSIGSSCC*SGLVRG
Trigger: GCCCCTGACCAAGCCGGAGCAACAGCAGGAGGAGCC...GATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp AATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCTGCAGACTCTGTGCGTaGTTCCGCGGCGATCCCGGG +
Preference number: 4 (lower is better)
Translates to: NYVAYKNNRAFVNFVHLPCRLCA*FRGDPG
Trigger: CCCGGGATCGCCGCGGAACCACGCACAGAGTCTGCA...GGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp AATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCCCACCCTCACGGTCTTaGTCGTCCGAGGGGACGGAC +
Preference number: 4 (lower is better)
Translates to: NYVAYKNNRAFVNFVHLPPPSRS*SSEGTD
Trigger: GTCCGTCCCCTCGGACGACCAAGACCGTGAGGGTGG...GGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp TATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTCATGGGTGGCCTGGGTaGCATAGGTGGCACAGGCAG +
Preference number: 4 (lower is better)
Translates to: YVAYKNNRAFVNFVHLPTHGWPG*HRWHRQ
Trigger: CTGCCTGTGCCACCTATGCCACCCAGGCCACCCATG...AGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp TATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTCTTCTGCAGACTCTGTaGGTGGTTCCGCGGCGATCC +
Preference number: 4 (lower is better)
Translates to: YVAYKNNRAFVNFVHLPTLLQTL*VVPRRS
Trigger: GGATCGCCGCGGAACCACGCACAGAGTCTGCAGAAG...AGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp AATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCGGCTCCTCCTGCTCTTaGTTCAGCTCGAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: NYVAYKNNRAFVNFVHLPGSSCS*FSSSRG
Trigger: GCCCCTGCTCGAGCTGAAGCAAGAGCAGGAGGAGCC...GGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp AAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCCCTCCACGGTCGTCTaGGGCGGCTCCTCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: KNNRAFVNFVHLPTSFNKPSTVV*GGSSCS
Trigger: AGAGCAGGAGGAGCCGCCCCAGACGACCGTGGAGGG...CTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp ATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCGAGGCACATGTGACCTaGGTGGCAGAGGCGCCATGG +
Preference number: 4 (lower is better)
Translates to: ITGHSLTLFTYPLHLTSIEAHVT*VAEAPW
Trigger: CCATGGCGCCTCTGCCACCCAGGTCACATGTGCCTC...GATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp ATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCCATGGGTGGCATAGGTaGTATGGGTGGCCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: ITGHSLTLFTYPLHLTSIHGWHR*YGWPGW
Trigger: CCACCCAGGCCACCCATAGCACCTATGCCACCCATG...GATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp TTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTAACGAATTACGCTGTTGCTCCGGCTTaGTCAGGGGCGGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: FVNFVHLPTSFNKHLTNYAVAPA*SGAAPP
Trigger: AGGAGGAGCCGCCCCTGACCAAGCCGGAGCAACAGC...GTAATTCGTTAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp CCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTACCTCTCTGGGGGCTGTaGTCCCTCAGCGGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: PTKITGHSLTLFTYPLHLPLWGL*SLSGLW
Trigger: CCACAAACCGCTGAGGGACCACAGCCCCCAGAGAGG...TAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp ACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAGCGGCGTTTCCTCTCTaGGGGCTGTGGTCCCTCAGC +
Preference number: 4 (lower is better)
Translates to: TKITGHSLTLFTYPLHLTAAFPL*GLWSLS
Trigger: GCTGAGGGACCACAGCCCCCAGAGAGGAAACGCCGC...TGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR TCA 90 bp AATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCTCTAGCTCCTGCAGCTaGAACTGCGTGAACGCGGTG +
Preference number: 4 (lower is better)
Translates to: NYVAYKNNRAFVNFVHLPSSSCS*NCVNAV
Trigger: CACCGCGTTCACGCAGTTTCAGCTGCAGGAGCTAGA...GGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR TCA 90 bp AAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGGGAGCCAGGCCAGTGTaGGGCACATGTGACCTGGGT +
Preference number: 4 (lower is better)
Translates to: KNNRAFVNFVHLPTSFNKGARPV*GTCDLG
Trigger: ACCCAGGTCACATGTGCCTCACACTGGCCTGGCTCC...CTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp TATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTGGACGGACCCTTCCGTaGCAACGTTGTTTTCCGCTT +
Preference number: 4 (lower is better)
Translates to: YVAYKNNRAFVNFVHLPTGRTLP*QRCFPL
Trigger: AAGCGGAAAACAACGTTGGCACGGAAGGGTCCGTCC...AGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp TACAATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCTGGGTGGCATAGGTaGCACAGGCAGCACAGGTGG +
Preference number: 4 (lower is better)
Translates to: YNYVAYKNNRAFVNFVHLPGWHR*HRQHRW
Trigger: CCACCTGTGCTGCCTGTGCCACCTATGCCACCCAGG...TAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp CCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTACATAGGGACCATGGGTaGCCTGGGTGGCATAGGTGG +
Preference number: 4 (lower is better)
Translates to: PTKITGHSLTLFTYPLHLHRDHG*PGWHRW
Trigger: CCACCTATGCCACCCAGGCCACCCATGGTCCCTATG...TAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp AATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCCATAGGTGCTATGGGTaGCCTGGGTGGCATAGGGAC +
Preference number: 4 (lower is better)
Translates to: NYVAYKNNRAFVNFVHLPHRCYG*PGWHRD
Trigger: GTCCCTATGCCACCCAGGCCACCCATAGCACCTATG...GGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp CCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTACGCCGACTGCCAGGCTaGGGTAGCCAATATCACTGT +
Preference number: 4 (lower is better)
Translates to: PTKITGHSLTLFTYPLHLRRLPG*GSQYHC
Trigger: ACAGTGATATTGGCTACCGCAGCCTGGCAGTCGGCG...TAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp AAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGGATGTCCTCGCCGACTaGCAGGCTGCGGTAGCCAAT +
Preference number: 4 (lower is better)
Translates to: KNNRAFVNFVHLPTSFNKDVLAD*QAAVAN
Trigger: ATTGGCTACCGCAGCCTGGCAGTCGGCGAGGACATC...CTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp ACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAGTCCTCTCCTCCCCTTaGCATCAGCGAGGTCACGGT +
Preference number: 4 (lower is better)
Translates to: TKITGHSLTLFTYPLHLTVLSSP*HQRGHG
Trigger: ACCGTGACCTCGCTGATGGCAAGGGGAGGAGAGGAC...TGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp TATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTAACATGTCCAAAGGGTaGGCCAGGTCAGCAGTAGCA +
Preference number: 4 (lower is better)
Translates to: YVAYKNNRAFVNFVHLPTNMSKG*ARSAVA
Trigger: TGCTACTGCTGACCTGGCCCACCCTTTGGACATGTT...AGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR TCA 90 bp TATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTAGTTGTGGCACCAGATaGACACACAAAGCAGGATCC +
Preference number: 4 (lower is better)
Translates to: YVAYKNNRAFVNFVHLPTSCGTR*THKAGS
Trigger: GGATCCTGCTTTGTGTGTTCATCTGGTGCCACAACT...AGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp AACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTAAGTCAAATTCAGGCGTaGTGCAAGTCTCTCTCGCGC +
Preference number: 4 (lower is better)
Translates to: NRAFVNFVHLPTSFNKHLSQIQA*CKSLSR
Trigger: GCGCGAGAGAGACTTGCAGCACGCCTGAATTTGACT...TAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp AAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCAAATTCAGGCGTGCTaGAAGTCTCTCTCGCGCCAC +
Preference number: 4 (lower is better)
Translates to: KNNRAFVNFVHLPTSFNKQIQAC*KSLSRH
Trigger: GTGGCGCGAGAGAGACTTGCAGCACGCCTGAATTTG...CTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CCA 90 bp TATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTTCCGTACTCAGGTTTaGACCGTGTATTCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: YVAYKNNRAFVNFVHLPTFRTQV*TVYSPR
Trigger: ACGAGGAGAATACACGGTCCAAACCTGAGTACGGAA...AGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp ACTACAATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCAAAGCTGTGCACTTCTaGAGACTCTGTGCGTGGTTC +
Preference number: 4 (lower is better)
Translates to: TTIMWPTKITGHSLTLFTKAVHF*RLCAWF
Trigger: GAACCACGCACAGAGTCTGCAGAAGTGCACAGCTTT...GGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATTGTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR TCA 90 bp ACTACAATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCAACATTAGCACCCTCTaGTTTCGTTTCCACTTGGCT +
Preference number: 4 (lower is better)
Translates to: TTIMWPTKITGHSLTLFTNISTL*FRFHLA
Trigger: AGCCAAGTGGAAACGAAATCAGAGGGTGCTAATGTT...GGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATTGTAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR GCA 90 bp TTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTAACGAATTACCTGTCGATAAAGCTGTaGACTTCTGCAGACTCTGTG +
Preference number: 4 (lower is better)
Translates to: FVNFVHLPTSFNKHLTNYLSIKL*TSADSV
Trigger: CACAGAGTCTGCAGAAGTGCACAGCTTTATCGACAG...GTAATTCGTTAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR TCA 90 bp ACTACAATTATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCACAACGTCGGGATATTaGGATTCATCGAAAAAGTTC +
Preference number: 4 (lower is better)
Translates to: TTIMWPTKITGHSLTLFTTTSGY*DSSKKF
Trigger: GAACTTTTTCGATGAATCTCAATATCCCGACGTTGT...GGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATAATTGTAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CCA 90 bp CAGCTGAAACTGCGTGAACGCGGTGCGGCGGCGGCGTTTCCTCTCTaGGGGCTGTGGTCCCTCAGCGGTTTGTGGCCCCTCCGCCGGCTG +
Preference number: 5 (lower is better)
Translates to: QLKLRERGAAAAFPL*GLWSLSGLWPLRRL
Trigger: CAGCCGGCGGAGGGGCCACAAACCGCTGAGGGACCACAGCCCCCAGAGAGGAAACGCCGCCGCCGCACCGCGTTCACGCAGTTTCAGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 90 bp CGCCACCCTCACGGTCTTGGTCGTCCGAGGGGACGGACCCTTCCGTaGCAACGTTGTTTTCCGCTTCTGTTCCGTACTCAGGTTTGGACC +
Preference number: 5 (lower is better)
Translates to: RHPHGLGRPRGRTLP*QRCFPLLFRTQVWT
Trigger: GGTCCAAACCTGAGTACGGAACAGAAGCGGAAAACAACGTTGGCACGGAAGGGTCCGTCCCCTCGGACGACCAAGACCGTGAGGGTGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 90 bp TACCCGCGAAGAGACTCCATGCTTCAAGCGCTGTCGATAAAGCTGTaGACTTCTGCAGACTCTGTGCGTGGTTCCGCGGCGATCCCGGGG +
Preference number: 5 (lower is better)
Translates to: YPRRDSMLQALSIKL*TSADSVRGSAAIPG
Trigger: CCCCGGGATCGCCGCGGAACCACGCACAGAGTCTGCAGAAGTGCACAGCTTTATCGACAGCGCTTGAAGCATGGAGTCTCTTCGCGGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS TCA 90 bp GAGATTCATCGAAAAAGTTCTCTAGCTCCTGCAGCTGAAACTGCGTaGACGCGGTGCGGCGGCGGCGTTTCCTCTCTGGGGGCTGTGGTC +
Preference number: 5 (lower is better)
Translates to: EIHRKSSLAPAAETA*TRCGGGVSSLGAVV
Trigger: GACCACAGCCCCCAGAGAGGAAACGCCGCCGCCGCACCGCGTTCACGCAGTTTCAGCTGCAGGAGCTAGAGAACTTTTTCGATGAATCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 90 bp AAGAGACTCCATGCTTCAAGCGCTGTCGATAAAGCTGTGCACTTCTaGAGACTCTGTGCGTGGTTCCGCGGCGATCCCGGGGTTGGAACT +
Preference number: 5 (lower is better)
Translates to: KRLHASSAVDKAVHF*RLCAWFRGDPGVGT
Trigger: AGTTCCAACCCCGGGATCGCCGCGGAACCACGCACAGAGTCTGCAGAAGTGCACAGCTTTATCGACAGCGCTTGAAGCATGGAGTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 90 bp GTTTCTCATCATTCACTTCCTCGATGTCCTCGCCGACTGCCAGGCTaGGGTAGCCAATATCACTGTGGGTGTACCCGCGAAGAGACTCCA +
Preference number: 5 (lower is better)
Translates to: VSHHSLPRCPRRLPG*GSQYHCGCTREETP
Trigger: TGGAGTCTCTTCGCGGGTACACCCACAGTGATATTGGCTACCGCAGCCTGGCAGTCGGCGAGGACATCGAGGAAGTGAATGATGAGAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 90 bp CACGGTAAGTTTCTCATCATTCACTTCCTCGATGTCCTCGCCGACTaGCAGGCTGCGGTAGCCAATATCACTGTGGGTGTACCCGCGAAG +
Preference number: 5 (lower is better)
Translates to: HGKFLIIHFLDVLAD*QAAVANITVGVPAK
Trigger: CTTCGCGGGTACACCCACAGTGATATTGGCTACCGCAGCCTGGCAGTCGGCGAGGACATCGAGGAAGTGAATGATGAGAAACTTACCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CCA 90 bp CTTCCGTGCCAACGTTGTTTTCCGCTTCTGTTCCGTACTCAGGTTTaGACCGTGTATTCTCCTCGTCCTCTCCTCCCCTTGCCATCAGCG +
Preference number: 5 (lower is better)
Translates to: LPCQRCFPLLFRTQV*TVYSPRPLLPLPSA
Trigger: CGCTGATGGCAAGGGGAGGAGAGGACGAGGAGAATACACGGTCCAAACCTGAGTACGGAACAGAAGCGGAAAACAACGTTGGCACGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CAA 90 bp TATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTGGTCCCTCAGCGGTTaGTGGCCCCTCCGCCGGCTG +
Preference number: 5 (lower is better)
Translates to: YVAYKNNRAFVNFVHLPTWSLSG*WPLRRL
Trigger: CAGCCGGCGGAGGGGCCACAAACCGCTGAGGGACCA...AGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CAA 90 bp TATGTGGCCTACAAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTCGTCCTCTCCTCCCCTaGCCATCAGCGAGGTCACGG +
Preference number: 5 (lower is better)
Translates to: YVAYKNNRAFVNFVHLPTRPLLP*PSARSR
Trigger: CCGTGACCTCGCTGATGGCAAGGGGAGGAGAGGACG...AGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTTGTAGGCCACATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CAA 90 bp ATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCGCCACCCTCACGGTCTaGGTCGTCCGAGGGGACGGA +
Preference number: 5 (lower is better)
Translates to: ITGHSLTLFTYPLHLTSIATLTV*VVRGDG
Trigger: TCCGTCCCCTCGGACGACCAAGACCGTGAGGGTGGC...GATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CAA 90 bp TTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTAACGAATTACCGGCTCCTCCTGCTCTaGCTTCAGCTCGAGCAGGGG +
Preference number: 5 (lower is better)
Translates to: FVNFVHLPTSFNKHLTNYRLLLL*LQLEQG
Trigger: CCCCTGCTCGAGCTGAAGCAAGAGCAGGAGGAGCCG...GTAATTCGTTAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CAA 90 bp ATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCCCTTCCGTGCCAACGTaGTTTTCCGCTTCTGTTCCG +
Preference number: 5 (lower is better)
Translates to: ITGHSLTLFTYPLHLTSIPSVPT*FSASVP
Trigger: CGGAACAGAAGCGGAAAACAACGTTGGCACGGAAGG...GATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CAA 90 bp AAAAATAACAGGGCATTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGGTTCCGTACTCAGGTTaGGACCGTGTATTCTCCTCG +
Preference number: 5 (lower is better)
Translates to: KNNRAFVNFVHLPTSFNKVPYSG*DRVFSS
Trigger: CGAGGAGAATACACGGTCCAAACCTGAGTACGGAAC...CTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAATGCCCTGTTATTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CAA 90 bp TTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTAACGAATTACCATCTAACGAATTACTaGATGCTGTGCTGTGCACAA +
Preference number: 5 (lower is better)
Translates to: FVNFVHLPTSFNKHLTNYHLTNY*MLCCAQ
Trigger: TTGTGCACAGCACAGCATCAAGTAATTCGTTAGATG...GTAATTCGTTAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS-3UTR CAA 90 bp TTCGTTAACTTTGTTCACCTACCCACTTCATTTAACAAGCATCTAACGAATTACCACAACGTCGGGATATaGAGATTCATCGAAAAAGTT +
Preference number: 5 (lower is better)
Translates to: FVNFVHLPTSFNKHLTNYHNVGI*RFIEKV
Trigger: AACTTTTTCGATGAATCTCAATATCCCGACGTTGTG...GTAATTCGTTAGATGCTTGTTAAATGAAGTGGGTAGGTGAACAAAGTTAACGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CCA 72 bp CGCGGTGCGGCGGCGGCGTTTCCTCTCTGGGGGCTGTaGTCCCTCAGCGGTTTGTGGCCCCTCCGCCGGCTG +
Preference number: 6 (lower is better)
Translates to: RGAAAAFPLWGL*SLSGLWPLRRL
Trigger: CAGCCGGCGGAGGGGCCACAAACCGCTGAGGGACCACAGCCCCCAGAGAGGAAACGCCGCCGCCGCACCGCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CCA 72 bp TGCTCCGGCTCGTGGCCGCCGCCACCCTCACGGTCTTaGTCGTCCGAGGGGACGGACCCTTCCGTGCCAACG +
Preference number: 6 (lower is better)
Translates to: CSGSWPPPPSRS*SSEGTDPSVPT
Trigger: CGTTGGCACGGAAGGGTCCGTCCCCTCGGACGACCAAGACCGTGAGGGTGGCGGCGGCCACGAGCCGGAGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CCA 72 bp CTGCGTGAACGCGGTGCGGCGGCGGCGTTTCCTCTCTaGGGGCTGTGGTCCCTCAGCGGTTTGTGGCCCCTC +
Preference number: 6 (lower is better)
Translates to: LRERGAAAAFPL*GLWSLSGLWPL
Trigger: GAGGGGCCACAAACCGCTGAGGGACCACAGCCCCCAGAGAGGAAACGCCGCCGCCGCACCGCGTTCACGCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CAA 72 bp TTGCTCCGGCTCGTGGCCGCCGCCACCCTCACGGTCTaGGTCGTCCGAGGGGACGGACCCTTCCGTGCCAAC +
Preference number: 6 (lower is better)
Translates to: LLRLVAAATLTV*VVRGDGPFRAN
Trigger: GTTGGCACGGAAGGGTCCGTCCCCTCGGACGACCAAGACCGTGAGGGTGGCGGCGGCCACGAGCCGGAGCAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS TCA 72 bp GGGGCCCATGTGATGTGTACAGGAGCCAGGCCAGTGTaGGGCACATGTGACCTGGGTGGCAGAGGCGCCATG +
Preference number: 6 (lower is better)
Translates to: GAHVMCTGARPV*GTCDLGGRGAM
Trigger: CATGGCGCCTCTGCCACCCAGGTCACATGTGCCTCACACTGGCCTGGCTCCTGTACACATCACATGGGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS TCA 72 bp CGAAAAAGTTCTCTAGCTCCTGCAGCTGAAACTGCGTaGACGCGGTGCGGCGGCGGCGTTTCCTCTCTGGGG +
Preference number: 6 (lower is better)
Translates to: RKSSLAPAAETA*TRCGGGVSSLG
Trigger: CCCCAGAGAGGAAACGCCGCCGCCGCACCGCGTTCACGCAGTTTCAGCTGCAGGAGCTAGAGAACTTTTTCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 72 bp CATGCTTCAAGCGCTGTCGATAAAGCTGTGCACTTCTaGAGACTCTGTGCGTGGTTCCGCGGCGATCCCGGG +
Preference number: 6 (lower is better)
Translates to: HASSAVDKAVHF*RLCAWFRGDPG
Trigger: CCCGGGATCGCCGCGGAACCACGCACAGAGTCTGCAGAAGTGCACAGCTTTATCGACAGCGCTTGAAGCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 72 bp CACGGTCTTGGTCGTCCGAGGGGACGGACCCTTCCGTaGCAACGTTGTTTTCCGCTTCTGTTCCGTACTCAG +
Preference number: 6 (lower is better)
Translates to: HGLGRPRGRTLP*QRCFPLLFRTQ
Trigger: CTGAGTACGGAACAGAAGCGGAAAACAACGTTGGCACGGAAGGGTCCGTCCCCTCGGACGACCAAGACCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 72 bp CATTCACTTCCTCGATGTCCTCGCCGACTGCCAGGCTaGGGTAGCCAATATCACTGTGGGTGTACCCGCGAA +
Preference number: 6 (lower is better)
Translates to: HSLPRCPRRLPG*GSQYHCGCTRE
Trigger: TTCGCGGGTACACCCACAGTGATATTGGCTACCGCAGCCTGGCAGTCGGCGAGGACATCGAGGAAGTGAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CAA 72 bp TGGTCGTCCGAGGGGACGGACCCTTCCGTGCCAACGTaGTTTTCCGCTTCTGTTCCGTACTCAGGTTTGGAC +
Preference number: 6 (lower is better)
Translates to: WSSEGTDPSVPT*FSASVPYSGLD
Trigger: GTCCAAACCTGAGTACGGAACAGAAGCGGAAAACAACGTTGGCACGGAAGGGTCCGTCCCCTCGGACGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CAA 90 bp TCACGGTCTTGGTCGTCCGAGGGGACGGACCCTTCCGTGCCAACGTaGTTTTCCGCTTCTGTTCCGTACTCAGGTTTGGACCGTGTATTC +
Preference number: 6 (lower is better)
Translates to: SRSWSSEGTDPSVPT*FSASVPYSGLDRVF
Trigger: GAATACACGGTCCAAACCTGAGTACGGAACAGAAGCGGAAAACAACGTTGGCACGGAAGGGTCCGTCCCCTCGGACGACCAAGACCGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 72 bp AGAGACTCCATGCTTCAAGCGCTGTCGATAAAGCTGTaGACTTCTGCAGACTCTGTGCGTGGTTCCGCGGCG +
Preference number: 6 (lower is better)
Translates to: RDSMLQALSIKL*TSADSVRGSAA
Trigger: CGCCGCGGAACCACGCACAGAGTCTGCAGAAGTGCACAGCTTTATCGACAGCGCTTGAAGCATGGAGTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CAA 90 bp CCTTCCGTGCCAACGTTGTTTTCCGCTTCTGTTCCGTACTCAGGTTaGGACCGTGTATTCTCCTCGTCCTCTCCTCCCCTTGCCATCAGC +
Preference number: 6 (lower is better)
Translates to: PSVPTLFSASVPYSG*DRVFSSSSPPLAIS
Trigger: GCTGATGGCAAGGGGAGGAGAGGACGAGGAGAATACACGGTCCAAACCTGAGTACGGAACAGAAGCGGAAAACAACGTTGGCACGGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 72 bp CCAAACCTGCACTCTGTCTTCAGTCAAATTCAGGCGTaGTGCAAGTCTCTCTCGCGCCACAACGTCGGGATA +
Preference number: 6 (lower is better)
Translates to: PNLHSVFSQIQA*CKSLSRHNVGI
Trigger: TATCCCGACGTTGTGGCGCGAGAGAGACTTGCAGCACGCCTGAATTTGACTGAAGACAGAGTGCAGGTTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 72 bp TTTCTCATCATTCACTTCCTCGATGTCCTCGCCGACTaGCAGGCTGCGGTAGCCAATATCACTGTGGGTGTA +
Preference number: 6 (lower is better)
Translates to: FLIIHFLDVLAD*QAAVANITVGV
Trigger: TACACCCACAGTGATATTGGCTACCGCAGCCTGGCAGTCGGCGAGGACATCGAGGAAGTGAATGATGAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS GCA 72 bp AACCTGCACTCTGTCTTCAGTCAAATTCAGGCGTGCTaGAAGTCTCTCTCGCGCCACAACGTCGGGATATTG +
Preference number: 6 (lower is better)
Translates to: NLHSVFSQIQAC*KSLSRHNVGIL
Trigger: CAATATCCCGACGTTGTGGCGCGAGAGAGACTTGCAGCACGCCTGAATTTGACTGAAGACAGAGTGCAGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CCA 72 bp CAACGTTGTTTTCCGCTTCTGTTCCGTACTCAGGTTTaGACCGTGTATTCTCCTCGTCCTCTCCTCCCCTTG +
Preference number: 6 (lower is better)
Translates to: QRCFPLLFRTQV*TVYSPRPLLPL
Trigger: CAAGGGGAGGAGAGGACGAGGAGAATACACGGTCCAAACCTGAGTACGGAACAGAAGCGGAAAACAACGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS CAA 72 bp CCAACGTTGTTTTCCGCTTCTGTTCCGTACTCAGGTTaGGACCGTGTATTCTCCTCGTCCTCTCCTCCCCTT +
Preference number: 6 (lower is better)
Translates to: PTLFSASVPYSG*DRVFSSSSPPL
Trigger: AAGGGGAGGAGAGGACGAGGAGAATACACGGTCCAAACCTGAGTACGGAACAGAAGCGGAAAACAACGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000372588.4
CDS TCA 72 bp GCTGCAAGTCTCTCTCGCGCCACAACGTCGGGATATTaGGATTCATCGAAAAAGTTCTCTAGCTCCTGCAGC +
Preference number: 6 (lower is better)
Translates to: AASLSRATTSGY*DSSKKFSSSCS
Trigger: GCTGCAGGAGCTAGAGAACTTTTTCGATGAATCTCAATATCCCGACGTTGTGGCGCGAGAGAGACTTGCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000372588.4