Pregenerated sensors for ERVK-28 (Homo sapiens)
Ensembl gene IDs: ENSG00000267696Ensembl transcript IDs: ENST00000589010.1, ENST00000598435.1, ENST00000600419.5
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTTGGGTACACCTaGAGATGTAAGGCTGACTGTAGACGTACTCAGGATCTCTCGTCG | + |
|
Preference number: 5 (lower is better) Translates to: PVLDGRCLFGAVGYT*RCKADCRRTQDLSS Trigger: CGACGAGAGATCCTGAGTACGTCTACAGTCAGCCTTACATCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589010.1 |
||
| CDS CCA 90 bp | TTTCTTTTCGACAAAACCGCCATCGTCATCATGGCCCGTTCTCGATaGTCGCTGTCTCTTCGGAGCTGTTGGGTACACCTGCAGACACCA | + |
|
Preference number: 5 (lower is better) Translates to: FLFDKTAIVIMARSR*SLSLRSCWVHLQTP Trigger: TGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCCATGATGACGATGGCGGTTTTGTCGAAAAGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||
| CDS TCA 90 bp | GGTCGCTGTCTCTTCGGAGCTGTTGGGTACACCTGCAGACACCATTaGTACAATCATCAAGGCTGCAAGCAGCATACTCTCTGGGGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: GRCLFGAVGYTCRHH*YNHQGCKQHTLWGL Trigger: CAAACCCCAGAGAGTATGCTGCTTGCAGCCTTGATGATTGTATCAATGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||
| CDS CCA 90 bp | TTTCTTTTCGACAAAACCGCCATCGTCATCATGGCCCGTTCTCGATaGTCGCTGTCTCTTCGGAGCTGTTGGGTACACCTGCAGACTTTG | + |
|
Preference number: 5 (lower is better) Translates to: FLFDKTAIVIMARSR*SLSLRSCWVHLQTL Trigger: CAAAGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCCATGATGACGATGGCGGTTTTGTCGAAAAGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000598435.1 |
||
| CDS CCA 90 bp | GTCATCATGGCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTTaGGTACACCTGCAGACACCATTGATACAATCATCAAGGCTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: VIMARSRWSLSLRSC*VHLQTPLIQSSRLQ Trigger: TTGCAGCCTTGATGATTGTATCAATGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCCATGATGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||
| CDS CCA 72 bp | GACAAAACCGCCATCGTCATCATGGCCCGTTCTCGATaGTCGCTGTCTCTTCGGAGCTGTTGGGTACACCTG | + |
|
Preference number: 6 (lower is better) Translates to: DKTAIVIMARSR*SLSLRSCWVHL Trigger: CAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCCATGATGACGATGGCGGTTTTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000589010.1 ENST00000598435.1 ENST00000600419.5 |
||
| CDS CAA 72 bp | GGCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTaGGGTACACCTGCAGATGTAAGGCTGACTGTAGAC | + |
|
Preference number: 6 (lower is better) Translates to: GPFSMVAVSSEL*GTPADVRLTVD Trigger: GTCTACAGTCAGCCTTACATCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589010.1 |
||
| CDS CAA 90 bp | CGTCATCATGGCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTaGGGTACACCTGCAGATGTAAGGCTGACTGTAGACGTACTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RHHGPFSMVAVSSEL*GTPADVRLTVDVLR Trigger: CCTGAGTACGTCTACAGTCAGCCTTACATCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCCATGATGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589010.1 |
||
| CDS CAA 72 bp | GGCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTaGGGTACACCTGCAGACACCATTGATACAATCATC | + |
|
Preference number: 6 (lower is better) Translates to: GPFSMVAVSSEL*GTPADTIDTII Trigger: GATGATTGTATCAATGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||
| CDS CAA 90 bp | CGTCATCATGGCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTaGGGTACACCTGCAGACACCATTGATACAATCATCAAGGCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: RHHGPFSMVAVSSEL*GTPADTIDTIIKAA Trigger: TGCAGCCTTGATGATTGTATCAATGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCCATGATGACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||
| CDS GCA 72 bp | GATGGTCGCTGTCTCTTCGGAGCTGTTGGGTACACCTaGAGATGTAAGGCTGACTGTAGACGTACTCAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: DGRCLFGAVGYT*RCKADCRRTQD Trigger: ATCCTGAGTACGTCTACAGTCAGCCTTACATCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589010.1 |
||
| CDS CCA 72 bp | GCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTTaGGTACACCTGCAGACACCATTGATACAATCATCA | + |
|
Preference number: 6 (lower is better) Translates to: ARSRWSLSLRSC*VHLQTPLIQSS Trigger: TGATGATTGTATCAATGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||
| CDS CAA 72 bp | GGCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTaGGGTACACCTGCAGACTTTGTGTTCTCTAGATAT | + |
|
Preference number: 6 (lower is better) Translates to: GPFSMVAVSSEL*GTPADFVFSRY Trigger: ATATCTAGAGAACACAAAGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000598435.1 |
||
| CDS CAA 90 bp | TGGTCGCTGTCTCTTCGGAGCTGTTGGGTACACCTGCAGACACCATaGATACAATCATCAAGGCTGCAAGCAGCATACTCTCTGGGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: WSLSLRSCWVHLQTP*IQSSRLQAAYSLGF Trigger: AAACCCCAGAGAGTATGCTGCTTGCAGCCTTGATGATTGTATCAATGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||
| CDS CCA 72 bp | TTAGTTGTGCCCAAGTCGGCGGCTCTGCTTTCTTGGTaGATGGCAACTTCATCTGTTCTTCTGACGTCACCA | + |
|
Preference number: 6 (lower is better) Translates to: LVVPKSAALLSW*MATSSVLLTSP Trigger: TGGTGACGTCAGAAGAACAGATGAAGTTGCCATCCACCAAGAAAGCAGAGCCGCCGACTTGGGCACAACTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000598435.1 ENST00000600419.5 |
||
| CDS CCA 72 bp | GCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTTaGGTACACCTGCAGACTTTGTGTTCTCTAGATATT | + |
|
Preference number: 6 (lower is better) Translates to: ARSRWSLSLRSC*VHLQTLCSLDI Trigger: AATATCTAGAGAACACAAAGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000598435.1 |
||
| CDS CAA 90 bp | CGTCATCATGGCCCGTTCTCGATGGTCGCTGTCTCTTCGGAGCTGTaGGGTACACCTGCAGACTTTGTGTTCTCTAGATATTTTGTAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RHHGPFSMVAVSSEL*GTPADFVFSRYFVA Trigger: AGCTACAAAATATCTAGAGAACACAAAGTCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGCGACCATCGAGAACGGGCCATGATGACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000598435.1 |
||
| CDS TCA 72 bp | CTCTTCGGAGCTGTTGGGTACACCTGCAGACACCATTaGTACAATCATCAAGGCTGCAAGCAGCATACTCTC | + |
|
Preference number: 6 (lower is better) Translates to: LFGAVGYTCRHH*YNHQGCKQHTL Trigger: GAGAGTATGCTGCTTGCAGCCTTGATGATTGTATCAATGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||
| CDS CAA 72 bp | TCTCTTCGGAGCTGTTGGGTACACCTGCAGACACCATaGATACAATCATCAAGGCTGCAAGCAGCATACTCT | + |
|
Preference number: 6 (lower is better) Translates to: SLRSCWVHLQTP*IQSSRLQAAYS Trigger: AGAGTATGCTGCTTGCAGCCTTGATGATTGTATCAATGGTGTCTGCAGGTGTACCCAACAGCTCCGAAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600419.5 |
||