Pregenerated sensors for ERVH-1 (Homo sapiens)
Ensembl gene IDs: ENSG00000251292Ensembl transcript IDs: ENST00000507666.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCCATCTGGGCATATACGTGCAAGTCACAGGGGATGCGATGGCTTaGCTTGGGCTCAGAGGCCTGAGAGCGGGCACCTGTAGTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: GHLGIYVQVTGDAMA*LGLRGLRAGTCSPA Trigger: AGCTGGACTACAGGTGCCCGCTCTCAGGCCTCTGAGCCCAAGCCAAGCCATCGCATCCCCTGTGACTTGCACGTATATGCCCAGATGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS GCA 90 bp | AGTTACTTCAGGCCATCTGGGCATATACGTGCAAGTCACAGGGGATaGGATGGCTTGGCTTGGGCTCAGAGGCCTGAGAGCGGGCACCTG | + |
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Preference number: 5 (lower is better) Translates to: SYFRPSGHIRASHRG*DGLAWAQRPESGHL Trigger: CAGGTGCCCGCTCTCAGGCCTCTGAGCCCAAGCCAAGCCATCGCATCCCCTGTGACTTGCACGTATATGCCCAGATGGCCTGAAGTAACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS GCA 90 bp | CTCCTAAGGGAGGTCCCCCGATCTGAGTCGCGGCACCAAATTTCATaGGCGTCCACTTCTTTTATGGTGGAATGTCATCAGTTAAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: LLREVPRSESRHQIS*ASTSFMVECHQLRW Trigger: CCACCTTAACTGATGACATTCCACCATAAAAGAAGTGGACGCGCATGAAATTTGGTGCCGCGACTCAGATCGGGGGACCTCCCTTAGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS TCA 90 bp | TTAAAATTGGTGAGATGTTCCTTGGGCTGGTCCGGTCTGAGGACCTaGGGTCATAGGTGGATCTTTCTCACGGAGCAAAGAACAGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: LKLVRCSLGWSGLRT*GHRWIFLTEQRTGG Trigger: TCCTCCTGTTCTTTGCTCCGTGAGAAAGATCCACCTATGACCTCAGGTCCTCAGACCGGACCAGCCCAAGGAACATCTCACCAATTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS CAA 72 bp | GGGCATATACGTGCAAGTCACAGGGGATGCGATGGCTaGGCTTGGGCTCAGAGGCCTGAGAGCGGGCACCTG | + |
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Preference number: 6 (lower is better) Translates to: GHIRASHRGCDG*AWAQRPESGHL Trigger: CAGGTGCCCGCTCTCAGGCCTCTGAGCCCAAGCCAAGCCATCGCATCCCCTGTGACTTGCACGTATATGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS CCA 72 bp | GGCATATACGTGCAAGTCACAGGGGATGCGATGGCTTaGCTTGGGCTCAGAGGCCTGAGAGCGGGCACCTGT | + |
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Preference number: 6 (lower is better) Translates to: GIYVQVTGDAMA*LGLRGLRAGTC Trigger: ACAGGTGCCCGCTCTCAGGCCTCTGAGCCCAAGCCAAGCCATCGCATCCCCTGTGACTTGCACGTATATGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS GCA 72 bp | AGGCCATCTGGGCATATACGTGCAAGTCACAGGGGATaGGATGGCTTGGCTTGGGCTCAGAGGCCTGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: RPSGHIRASHRG*DGLAWAQRPES Trigger: GCTCTCAGGCCTCTGAGCCCAAGCCAAGCCATCGCATCCCCTGTGACTTGCACGTATATGCCCAGATGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS CAA 72 bp | GCGGCATTAGGGTCGGCGTGGGAACCTGATTTAAAATaGGTGAGATGTTCCTTGGGCTGGTCCGGTCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: AALGSAWEPDLK*VRCSLGWSGLR Trigger: CCTCAGACCGGACCAGCCCAAGGAACATCTCACCAATTTTAAATCAGGTTCCCACGCCGACCCTAATGCCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS TCA 72 bp | GTGAGATGTTCCTTGGGCTGGTCCGGTCTGAGGACCTaGGGTCATAGGTGGATCTTTCTCACGGAGCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: VRCSLGWSGLRT*GHRWIFLTEQR Trigger: TCTTTGCTCCGTGAGAAAGATCCACCTATGACCTCAGGTCCTCAGACCGGACCAGCCCAAGGAACATCTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS TCA 72 bp | GCTGCTTCAAGCGGCATTAGGGTCGGCGTGGGAACCTaGTTTAAAATTGGTGAGATGTTCCTTGGGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: AASSGIRVGVGT*FKIGEMFLGLV Trigger: GACCAGCCCAAGGAACATCTCACCAATTTTAAATCAGGTTCCCACGCCGACCCTAATGCCGCTTGAAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS GCA 72 bp | GAGGTCCCCCGATCTGAGTCGCGGCACCAAATTTCATaGGCGTCCACTTCTTTTATGGTGGAATGTCATCAG | + |
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Preference number: 6 (lower is better) Translates to: EVPRSESRHQIS*ASTSFMVECHQ Trigger: CTGATGACATTCCACCATAAAAGAAGTGGACGCGCATGAAATTTGGTGCCGCGACTCAGATCGGGGGACCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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| CDS CCA 72 bp | TTCTCAGGGCTGCTTCAAGCGGCATTAGGGTCGGCGTaGGAACCTGATTTAAAATTGGTGAGATGTTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: FSGLLQAALGSA*EPDLKLVRCSL Trigger: CAAGGAACATCTCACCAATTTTAAATCAGGTTCCCACGCCGACCCTAATGCCGCTTGAAGCAGCCCTGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507666.1 |
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