Pregenerated sensors for EPYC (Homo sapiens)
Ensembl gene IDs: ENSG00000083782Ensembl transcript IDs: ENST00000261172.8, ENST00000550203.1, ENST00000551767.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TCATCTCTCAGAACACAATCTCAAAGTATCATGCTGAGTTTTGTTTaGGAAGAGAGCAGTAAGAATGGTTTATTTATAGTAGCCATCGTA | + |
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Preference number: 2 (lower is better) Translates to: SSLRTQSQSIMLSFV*EESSKNGLFIVAIV Trigger: TACGATGGCTACTATAAATAAACCATTCTTACTGCTCTCTTCCAAAACAAAACTCAGCATGATACTTTGAGATTGTGTTCTGAGAGATGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000261172.8 |
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| CDS CCA 90 bp | TCTTCATTTGTGTGTGGCCCCAGAACCCCTGTGAATTCAGGCTCCTaGGGAGAAGAGCCATCAATCAGCCTGGGAGTAGATTCCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: SSFVCGPRTPVNSGS*GEEPSISLGVDSSS Trigger: GGAGGAGGAATCTACTCCCAGGCTGATTGATGGCTCTTCTCCCCAGGAGCCTGAATTCACAGGGGTTCTGGGGCCACACACAAATGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000261172.8 ENST00000550203.1 ENST00000551767.1 |
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| CDS TCA 90 bp | GGCCTTCTCAGGCTGTGGGGGTGGAGTGAGGAGCTCTCTGTTCCCTaGAGGCATCACTGTGGCTATTTCAATCTCAACTTTATCAACAGG | + |
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Preference number: 5 (lower is better) Translates to: GLLRLWGWSEELSVP*RHHCGYFNLNFINR Trigger: CCTGTTGATAAAGTTGAGATTGAAATAGCCACAGTGATGCCTTCAGGGAACAGAGAGCTCCTCACTCCACCCCCACAGCCTGAGAAGGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000261172.8 ENST00000550203.1 ENST00000551767.1 |
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| CDS TCA 90 bp | GGGAGCTGCCTTATTTTGTTGTCACGCAGGACAAGCTCTCGAAGTTaGGGCAGTTTTCGGAATGCATCTTCATCAATCTCAGATATTAAA | + |
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Preference number: 5 (lower is better) Translates to: GSCLILLSRRTSSRS*GSFRNASSSISDIK Trigger: TTTAATATCTGAGATTGATGAAGATGCATTCCGAAAACTGCCTCAACTTCGAGAGCTTGTCCTGCGTGACAACAAAATAAGGCAGCTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261172.8 ENST00000551767.1 |
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| CDS CCA 90 bp | CTTTTTAATTCTGTTAAAGCGGGAATAGAAATAAGCGGTGTTCTTTaGCAGCGGAGGAATAGCATCAAGTTCATGGTCATCACAGTACAC | + |
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Preference number: 5 (lower is better) Translates to: LFNSVKAGIEISGVL*QRRNSIKFMVITVH Trigger: GTGTACTGTGATGACCATGAACTTGATGCTATTCCTCCGCTGCCAAAGAACACCGCTTATTTCTATTCCCGCTTTAACAGAATTAAAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000261172.8 ENST00000550203.1 ENST00000551767.1 |
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| CDS CCA 90 bp | TCTATTGTTGCTAATATCAATAAATGTCAAAGTGGTTGGCAATTCTaGGAGCTGCCTTATTTTGTTGTCACGCAGGACAAGCTCTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: SIVANINKCQSGWQF*ELPYFVVTQDKLSK Trigger: CTTCGAGAGCTTGTCCTGCGTGACAACAAAATAAGGCAGCTCCCAGAATTGCCAACCACTTTGACATTTATTGATATTAGCAACAATAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000261172.8 ENST00000551767.1 |
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| CDS CCA 90 bp | CCTTCCAAGTCTATTGTTGCTAATATCAATAAATGTCAAAGTGGTTaGCAATTCTGGGAGCTGCCTTATTTTGTTGTCACGCAGGACAAG | + |
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Preference number: 5 (lower is better) Translates to: PSKSIVANINKCQSG*QFWELPYFVVTQDK Trigger: CTTGTCCTGCGTGACAACAAAATAAGGCAGCTCCCAGAATTGCCAACCACTTTGACATTTATTGATATTAGCAACAATAGACTTGGAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000261172.8 ENST00000551767.1 |
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| CDS CCA 72 bp | GTGTGTGGCCCCAGAACCCCTGTGAATTCAGGCTCCTaGGGAGAAGAGCCATCAATCAGCCTGGGAGTAGAT | + |
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Preference number: 6 (lower is better) Translates to: VCGPRTPVNSGS*GEEPSISLGVD Trigger: ATCTACTCCCAGGCTGATTGATGGCTCTTCTCCCCAGGAGCCTGAATTCACAGGGGTTCTGGGGCCACACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000261172.8 ENST00000550203.1 ENST00000551767.1 |
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| CDS TCA 72 bp | AGGCTGTGGGGGTGGAGTGAGGAGCTCTCTGTTCCCTaGAGGCATCACTGTGGCTATTTCAATCTCAACTTT | + |
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Preference number: 6 (lower is better) Translates to: RLWGWSEELSVP*RHHCGYFNLNF Trigger: AAAGTTGAGATTGAAATAGCCACAGTGATGCCTTCAGGGAACAGAGAGCTCCTCACTCCACCCCCACAGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000261172.8 ENST00000550203.1 ENST00000551767.1 |
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| CDS TCA 72 bp | ACTCTAGAGTTGGGGCAGTCACAGCAGCATCAAAGATaGCAAGTCCCAGAACAAGTCCTGCTAATGTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: TLELGQSQQHQR*QVPEQVLLMSS Trigger: TGAAGACATTAGCAGGACTTGTTCTGGGACTTGTCATCTTTGATGCTGCTGTGACTGCCCCAACTCTAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000261172.8 ENST00000551767.1 |
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| CDS GCA 72 bp | TCAATAAATGTCAAAGTGGTTGGCAATTCTGGGAGCTaGCTTATTTTGTTGTCACGCAGGACAAGCTCTCGA | + |
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Preference number: 6 (lower is better) Translates to: SINVKVVGNSGS*LILLSRRTSSR Trigger: TCGAGAGCTTGTCCTGCGTGACAACAAAATAAGGCAGCTCCCAGAATTGCCAACCACTTTGACATTTATTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000261172.8 ENST00000551767.1 |
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| CDS CCA 72 bp | GTGTTCTTTGGCAGCGGAGGAATAGCATCAAGTTCATaGTCATCACAGTACACGGTGGTACTTATACAAGTA | + |
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Preference number: 6 (lower is better) Translates to: VFFGSGGIASSS*SSQYTVVLIQV Trigger: TACTTGTATAAGTACCACCGTGTACTGTGATGACCATGAACTTGATGCTATTCCTCCGCTGCCAAAGAACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000261172.8 ENST00000550203.1 ENST00000551767.1 |
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| CDS CCA 72 bp | TCTGTTAAAGCGGGAATAGAAATAAGCGGTGTTCTTTaGCAGCGGAGGAATAGCATCAAGTTCATGGTCATC | + |
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Preference number: 6 (lower is better) Translates to: SVKAGIEISGVL*QRRNSIKFMVI Trigger: GATGACCATGAACTTGATGCTATTCCTCCGCTGCCAAAGAACACCGCTTATTTCTATTCCCGCTTTAACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000261172.8 ENST00000550203.1 ENST00000551767.1 |
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| CDS CAA 72 bp | CCTTATTTTGTTGTCACGCAGGACAAGCTCTCGAAGTaGAGGCAGTTTTCGGAATGCATCTTCATCAATCTC | + |
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Preference number: 6 (lower is better) Translates to: PYFVVTQDKLSK*RQFSECIFINL Trigger: GAGATTGATGAAGATGCATTCCGAAAACTGCCTCAACTTCGAGAGCTTGTCCTGCGTGACAACAAAATAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261172.8 ENST00000551767.1 |
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| CDS TCA 72 bp | CTTATTTTGTTGTCACGCAGGACAAGCTCTCGAAGTTaGGGCAGTTTTCGGAATGCATCTTCATCAATCTCA | + |
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Preference number: 6 (lower is better) Translates to: LILLSRRTSSRS*GSFRNASSSIS Trigger: TGAGATTGATGAAGATGCATTCCGAAAACTGCCTCAACTTCGAGAGCTTGTCCTGCGTGACAACAAAATAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000261172.8 ENST00000551767.1 |
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| CDS CCA 72 bp | TCTATTGTTGCTAATATCAATAAATGTCAAAGTGGTTaGCAATTCTGGGAGCTGCCTTATTTTGTTGTCACG | + |
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Preference number: 6 (lower is better) Translates to: SIVANINKCQSG*QFWELPYFVVT Trigger: CGTGACAACAAAATAAGGCAGCTCCCAGAATTGCCAACCACTTTGACATTTATTGATATTAGCAACAATAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000261172.8 ENST00000551767.1 |
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