Pregenerated sensors for EPCAM (Homo sapiens)
Ensembl gene IDs: ENSG00000119888Ensembl transcript IDs: ENST00000263735.9, ENST00000405271.5, ENST00000419334.1, ENST00000456133.5, ENST00000474691.1, ENST00000490733.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGCTCCCCGGGACGGCCCTCGCCGTTTCCTACCGCGCGGAGGGCCTaGGCCGGAGCACGGCCGCACCGTCCGGTCTCCACGCTGGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: CSPGRPSPFPTARRA*AGARPHRPVSTLES Trigger: GCTTTCCAGCGTGGAGACCGGACGGTGCGGCCGTGCTCCGGCTCAGGCCCTCCGCGCGGTAGGAAACGGCGAGGGCCGTCCCGGGGAGCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS CCA 90 bp | GCACGGCCGCACCGTCCGGTCTCCACGCTGGAAAGCGCGGCCTCTTaGTCCCCTCCCTATTATGCCCGTTTCGGGGGCCGAGGGCCGGGG | + |
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Preference number: 5 (lower is better) Translates to: ARPHRPVSTLESAAS*SPPYYARFGGRGPG Trigger: CCCCGGCCCTCGGCCCCCGAAACGGGCATAATAGGGAGGGGACCAAGAGGCCGCGCTTTCCAGCGTGGAGACCGGACGGTGCGGCCGTGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS CCA 90 bp | GGAGGGCCTGAGCCGGAGCACGGCCGCACCGTCCGGTCTCCACGCTaGAAAGCGCGGCCTCTTGGTCCCCTCCCTATTATGCCCGTTTCG | + |
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Preference number: 5 (lower is better) Translates to: GGPEPEHGRTVRSPR*KARPLGPLPIMPVS Trigger: CGAAACGGGCATAATAGGGAGGGGACCAAGAGGCCGCGCTTTCCAGCGTGGAGACCGGACGGTGCGGCCGTGCTCCGGCTCAGGCCCTCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS TCA 90 bp | CCAGCCCAGCTCCACAACTCTGCTCCAATCCGCGCCTCACCTTCCTaGGCTGCGGCAAAAGTCGCCGTCGCCGCGGCAAGCAGAAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: PAQLHNSAPIRASPS*AAAKVAVAAASRSP Trigger: CGGGCTTCTGCTTGCCGCGGCGACGGCGACTTTTGCCGCAGCTCAGGAAGGTGAGGCGCGGATTGGAGCAGAGTTGTGGAGCTGGGCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS GCA 90 bp | CCAGCTCCACAACTCTGCTCCAATCCGCGCCTCACCTTCCTGAGCTaGGGCAAAAGTCGCCGTCGCCGCGGCAAGCAGAAGCCCGAACGC | + |
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Preference number: 5 (lower is better) Translates to: PAPQLCSNPRLTFLS*GKSRRRRGKQKPER Trigger: GCGTTCGGGCTTCTGCTTGCCGCGGCGACGGCGACTTTTGCCGCAGCTCAGGAAGGTGAGGCGCGGATTGGAGCAGAGTTGTGGAGCTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS CCA 90 bp | GCCCCGCCCCAGGTGCTTCGTCTCCATGGCGGCGTTAGGGATCTTTaGTGGCCTCCGAGGAGGTTTGAAGATTCTGTGCTGAGACTTCCT | + |
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Preference number: 5 (lower is better) Translates to: APPQVLRLHGGVRDL*WPPRRFEDSVLRLP Trigger: AGGAAGTCTCAGCACAGAATCTTCAAACCTCCTCGGAGGCCACCAAAGATCCCTAACGCCGCCATGGAGACGAAGCACCTGGGGCGGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000405271.5 ENST00000456133.5 |
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| CDS TCA 72 bp | GGACGGCCCTCGCCGTTTCCTACCGCGCGGAGGGCCTaGGCCGGAGCACGGCCGCACCGTCCGGTCTCCACG | + |
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Preference number: 6 (lower is better) Translates to: GRPSPFPTARRA*AGARPHRPVST Trigger: CGTGGAGACCGGACGGTGCGGCCGTGCTCCGGCTCAGGCCCTCCGCGCGGTAGGAAACGGCGAGGGCCGTCC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS CAA 90 bp | AGCACGGCCGCACCGTCCGGTCTCCACGCTGGAAAGCGCGGCCTCTaGGTCCCCTCCCTATTATGCCCGTTTCGGGGGCCGAGGGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: STAAPSGLHAGKRGL*VPSLLCPFRGPRAG Trigger: CCCGGCCCTCGGCCCCCGAAACGGGCATAATAGGGAGGGGACCAAGAGGCCGCGCTTTCCAGCGTGGAGACCGGACGGTGCGGCCGTGCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS CCA 72 bp | GAGCCGGAGCACGGCCGCACCGTCCGGTCTCCACGCTaGAAAGCGCGGCCTCTTGGTCCCCTCCCTATTATG | + |
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Preference number: 6 (lower is better) Translates to: EPEHGRTVRSPR*KARPLGPLPIM Trigger: CATAATAGGGAGGGGACCAAGAGGCCGCGCTTTCCAGCGTGGAGACCGGACGGTGCGGCCGTGCTCCGGCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS CAA 72 bp | GCACCGTCCGGTCTCCACGCTGGAAAGCGCGGCCTCTaGGTCCCCTCCCTATTATGCCCGTTTCGGGGGCCG | + |
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Preference number: 6 (lower is better) Translates to: APSGLHAGKRGL*VPSLLCPFRGP Trigger: CGGCCCCCGAAACGGGCATAATAGGGAGGGGACCAAGAGGCCGCGCTTTCCAGCGTGGAGACCGGACGGTGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS CCA 72 bp | CACCGTCCGGTCTCCACGCTGGAAAGCGCGGCCTCTTaGTCCCCTCCCTATTATGCCCGTTTCGGGGGCCGA | + |
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Preference number: 6 (lower is better) Translates to: HRPVSTLESAAS*SPPYYARFGGR Trigger: TCGGCCCCCGAAACGGGCATAATAGGGAGGGGACCAAGAGGCCGCGCTTTCCAGCGTGGAGACCGGACGGTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS TCA 72 bp | TTCACAGACACATTCAAGGCGAGCAAAGCTGCGAAGTaGGGCTGCTCCCCGGGACGGCCCTCGCCGTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: FTDTFKASKAAK*GCSPGRPSPFP Trigger: AGGAAACGGCGAGGGCCGTCCCGGGGAGCAGCCTCACTTCGCAGCTTTGCTCGCCTTGAATGTGTCTGTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS GCA 72 bp | TGTAGTTTTCACAGACACATTCAAGGCGAGCAAAGCTaGGAAGTGAGGCTGCTCCCCGGGACGGCCCTCGCC | + |
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Preference number: 6 (lower is better) Translates to: CSFHRHIQGEQS*EVRLLPGTALA Trigger: GGCGAGGGCCGTCCCGGGGAGCAGCCTCACTTCGCAGCTTTGCTCGCCTTGAATGTGTCTGTGAAAACTACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419334.1 |
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| CDS CAA 90 bp | CTTCTGACCCCAGCAGTGTTCACACACCAGCACATGGAGGTGCCGTaGCACTGCTTGGCCTTAAAGAGCCCGCTCTCATCGCAGTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: LLTPAVFTHQHMEVP*HCLALKSPLSSQSG Trigger: TCCTGACTGCGATGAGAGCGGGCTCTTTAAGGCCAAGCAGTGCAACGGCACCTCCATGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000263735.9 ENST00000405271.5 ENST00000456133.5 ENST00000474691.1 ENST00000490733.1 |
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| CDS CAA 72 bp | CCAGCAGTGTTCACACACCAGCACATGGAGGTGCCGTaGCACTGCTTGGCCTTAAAGAGCCCGCTCTCATCG | + |
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Preference number: 6 (lower is better) Translates to: PAVFTHQHMEVP*HCLALKSPLSS Trigger: CGATGAGAGCGGGCTCTTTAAGGCCAAGCAGTGCAACGGCACCTCCATGTGCTGGTGTGTGAACACTGCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000263735.9 ENST00000405271.5 ENST00000419334.1 ENST00000456133.5 ENST00000474691.1 ENST00000490733.1 |
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| CDS CAA 72 bp | GTTTTCACAGACACATTCTCTGGCCGCTGGTGCTCGTaGATGAGTCACCGCCCGGGAGTTGGGGGAGTGAGT | + |
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Preference number: 6 (lower is better) Translates to: VFTDTFSGRWCS*MSHRPGVGGVS Trigger: ACTCACTCCCCCAACTCCCGGGCGGTGACTCATCAACGAGCACCAGCGGCCAGAGAATGTGTCTGTGAAAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000405271.5 ENST00000456133.5 |
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| CDS GCA 72 bp | GTGTTCACACACCAGCACATGGAGGTGCCGTTGCACTaGTTGGCCTTAAAGAGCCCGCTCTCATCGCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: VFTHQHMEVPLH*LALKSPLSSQS Trigger: TGACTGCGATGAGAGCGGGCTCTTTAAGGCCAAGCAGTGCAACGGCACCTCCATGTGCTGGTGTGTGAACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000263735.9 ENST00000405271.5 ENST00000419334.1 ENST00000456133.5 ENST00000474691.1 ENST00000490733.1 |
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| CDS CCA 72 bp | CAGGTGCTTCGTCTCCATGGCGGCGTTAGGGATCTTTaGTGGCCTCCGAGGAGGTTTGAAGATTCTGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: QVLRLHGGVRDL*WPPRRFEDSVL Trigger: CAGCACAGAATCTTCAAACCTCCTCGGAGGCCACCAAAGATCCCTAACGCCGCCATGGAGACGAAGCACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000405271.5 ENST00000456133.5 |
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| CDS CAA 72 bp | TTCACACACCAGCACATGGAGGTGCCGTTGCACTGCTaGGCCTTAAAGAGCCCGCTCTCATCGCAGTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: FTHQHMEVPLHC*ALKSPLSSQSG Trigger: TCCTGACTGCGATGAGAGCGGGCTCTTTAAGGCCAAGCAGTGCAACGGCACCTCCATGTGCTGGTGTGTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000263735.9 ENST00000405271.5 ENST00000419334.1 ENST00000456133.5 ENST00000474691.1 ENST00000490733.1 |
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| CDS CAA 90 bp | CATTGTTCTGGAGGGCCCCTTCAGGTTTTGCTCTTCTCCCAAGTTTaGAGCCATTCATTTCTGCCTTCATCACCAAACATTTGGCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: HCSGGPLQVLLFSQV*SHSFLPSSPNIWQP Trigger: TGGCTGCCAAATGTTTGGTGATGAAGGCAGAAATGAATGGCTCAAAACTTGGGAGAAGAGCAAAACCTGAAGGGGCCCTCCAGAACAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000263735.9 ENST00000405271.5 ENST00000419334.1 ENST00000456133.5 ENST00000474691.1 ENST00000490733.1 |
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| CDS CAA 90 bp | CAGGATCATAAAGCCCATCATTGTTCTGGAGGGCCCCTTCAGGTTTaGCTCTTCTCCCAAGTTTTGAGCCATTCATTTCTGCCTTCATCA | + |
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Preference number: 6 (lower is better) Translates to: QDHKAHHCSGGPLQV*LFSQVLSHSFLPSS Trigger: TGATGAAGGCAGAAATGAATGGCTCAAAACTTGGGAGAAGAGCAAAACCTGAAGGGGCCCTCCAGAACAATGATGGGCTTTATGATCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000263735.9 ENST00000405271.5 ENST00000419334.1 ENST00000456133.5 ENST00000474691.1 ENST00000490733.1 |
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| CDS TCA 72 bp | TCATCACCAAACATTTGGCAGCCAGCTTTGAGCAAATaGCAGTATTTTGTGCACCAACTGAAGTACACTGGC | + |
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Preference number: 6 (lower is better) Translates to: SSPNIWQPALSK*QYFVHQLKYTG Trigger: GCCAGTGTACTTCAGTTGGTGCACAAAATACTGTCATTTGCTCAAAGCTGGCTGCCAAATGTTTGGTGATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000263735.9 ENST00000405271.5 ENST00000419334.1 ENST00000456133.5 |
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| CDS CAA 72 bp | TTTGAGCCATTCATTTCTGCCTTCATCACCAAACATTaGGCAGCCACTGAAAAAGAAACCTTAATGCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: FEPFISAFITKH*AATEKETLMPN Trigger: GTTTGGCATTAAGGTTTCTTTTTCAGTGGCTGCCAAATGTTTGGTGATGAAGGCAGAAATGAATGGCTCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000474691.1 ENST00000490733.1 |
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| CDS CAA 90 bp | AACATTATTCTCATACAAAATACTCGTGATAAATTTTGGATCCAGTaGATAACGCGTTGTGATCTCCTTCTGAAGTGCAGTCCGCAAACT | + |
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Preference number: 6 (lower is better) Translates to: NIILIQNTRDKFWIQ*ITRCDLLLKCSPQT Trigger: AGTTTGCGGACTGCACTTCAGAAGGAGATCACAACGCGTTATCAACTGGATCCAAAATTTATCACGAGTATTTTGTATGAGAATAATGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000263735.9 ENST00000405271.5 ENST00000456133.5 ENST00000490733.1 |
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