Pregenerated sensors for ELK1 (Homo sapiens)
Ensembl gene IDs: ENSG00000126767Ensembl transcript IDs: ENST00000343894.8, ENST00000376983.8, ENST00000468956.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGGGTACTGTTAAAGAGGGATGCGGAGGAGTGCGGCGCCACGGATTaGTTCGCTACGATGTACAGGAAGGGTGGAATAAATAAGGCCACG | + |
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Preference number: 5 (lower is better) Translates to: GVLLKRDAEECGATD*FATMYRKGGINKAT Trigger: CGTGGCCTTATTTATTCCACCCTTCCTGTACATCGTAGCGAATCAATCCGTGGCGCCGCACTCCTCCGCATCCCTCTTTAACAGTACCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000343894.8 ENST00000376983.8 |
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| CDS TCA 90 bp | TTCTCTTTGTTAAAGAGGGATGCGGAGGAGTGCGGCGCCACGGATTaGTTCGCTACGATGTACAGGAAGGGTGGAATAAATAAGGCCACG | + |
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Preference number: 5 (lower is better) Translates to: FSLLKRDAEECGATD*FATMYRKGGINKAT Trigger: CGTGGCCTTATTTATTCCACCCTTCCTGTACATCGTAGCGAATCAATCCGTGGCGCCGCACTCCTCCGCATCCCTCTTTAACAAAGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468956.1 |
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| CDS TCA 90 bp | GCCTCAAAAATTATCCTGTGTCCTGAGTACTTCCTGGGCCACCTTTaGGTAAGGAATTTAACCTCCCTATGGCCCAATTCCCTCACTACC | + |
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Preference number: 5 (lower is better) Translates to: ASKIILCPEYFLGHL*VRNLTSLWPNSLTT Trigger: GGTAGTGAGGGAATTGGGCCATAGGGAGGTTAAATTCCTTACTCAAAGGTGGCCCAGGAAGTACTCAGGACACAGGATAATTTTTGAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000468956.1 |
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| CDS GCA 90 bp | GGGGTTGTGGTGAGGATTAAAGGAACTCATTCATATGAAACACTCTaGCTGATATACGGCAGGTGCTCAATAAACGCTAGCTCCTATTGG | + |
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Preference number: 5 (lower is better) Translates to: GVVVRIKGTHSYETL*LIYGRCSINASSYW Trigger: CCAATAGGAGCTAGCGTTTATTGAGCACCTGCCGTATATCAGGCAGAGTGTTTCATATGAATGAGTTCCTTTAATCCTCACCACAACCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000468956.1 |
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| CDS GCA 72 bp | TGCTCACGCCATCCCAGGGGTACTGTTAAAGAGGGATaGGGAGGAGTGCGGCGCCACGGATTGATTCGCTAC | + |
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Preference number: 6 (lower is better) Translates to: CSRHPRGTVKEG*GGVRRHGLIRY Trigger: GTAGCGAATCAATCCGTGGCGCCGCACTCCTCCGCATCCCTCTTTAACAGTACCCCTGGGATGGCGTGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000343894.8 ENST00000376983.8 |
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| CDS CAA 72 bp | GTTAAAGAGGGATGCGGAGGAGTGCGGCGCCACGGATaGATTCGCTACGATGTACAGGAAGGGTGGAATAAA | + |
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Preference number: 6 (lower is better) Translates to: VKEGCGGVRRHG*IRYDVQEGWNK Trigger: TTTATTCCACCCTTCCTGTACATCGTAGCGAATCAATCCGTGGCGCCGCACTCCTCCGCATCCCTCTTTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000343894.8 ENST00000376983.8 ENST00000468956.1 |
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| CDS TCA 72 bp | TTAAAGAGGGATGCGGAGGAGTGCGGCGCCACGGATTaGTTCGCTACGATGTACAGGAAGGGTGGAATAAAT | + |
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Preference number: 6 (lower is better) Translates to: LKRDAEECGATD*FATMYRKGGIN Trigger: ATTTATTCCACCCTTCCTGTACATCGTAGCGAATCAATCCGTGGCGCCGCACTCCTCCGCATCCCTCTTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000343894.8 ENST00000376983.8 ENST00000468956.1 |
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| CDS TCA 72 bp | CCCAATTCCCTCACTACCTATCTCATGGGGTTGTGGTaGGGATTAAAGGAACTCATTCATATGAAACACTCT | + |
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Preference number: 6 (lower is better) Translates to: PNSLTTYLMGLW*GLKELIHMKHS Trigger: AGAGTGTTTCATATGAATGAGTTCCTTTAATCCTCACCACAACCCCATGAGATAGGTAGTGAGGGAATTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000468956.1 |
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| CDS GCA 72 bp | GTGAGGATTAAAGGAACTCATTCATATGAAACACTCTaGCTGATATACGGCAGGTGCTCAATAAACGCTAGC | + |
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Preference number: 6 (lower is better) Translates to: VRIKGTHSYETL*LIYGRCSINAS Trigger: GCTAGCGTTTATTGAGCACCTGCCGTATATCAGGCAGAGTGTTTCATATGAATGAGTTCCTTTAATCCTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468956.1 |
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