RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EFHD2 (Homo sapiens)

Ensembl gene IDs: ENSG00000142634

Ensembl transcript IDs: ENST00000375980.9, ENST00000445566.1

Found 170 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGATTGCCAGGGAGGGCCGGGCCGGGCAGGGAGCCAGCGCCGGTGTaGCGGCCTCGTGCAGAGTGGAAGGGAGCGGGGAGGGGCCGGGCC +
Preference number: 1 (lower is better)
Translates to: GLPGRAGPGREPAPV*RPRAEWKGAGRGRA
Trigger: GGCCCGGCCCCTCCCCGCTCCCTTCCACTCTGCACGAGGCCGCCACACCGGCGCTGGCTCCCTGCCCGGCCCGGCCCTCCCTGGCAATCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
3UTR GCA 90 bp AGTGGTCCCGTCAGACACAGGCAAGGATTCAGGCTCGGCCTCCCATaGGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGGTCG +
Preference number: 1 (lower is better)
Translates to: SGPVRHRQGFRLGLP*ATLAHHTGAGAGRS
Trigger: CGACCGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGCCTGAATCCTTGCCTGTGTCTGACGGGACCACT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
3UTR CCA 90 bp CGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTaGCCTGGGCCTGACCACGGCCTGTCTGGTGCAGGGCACCAGGGT +
Preference number: 1 (lower is better)
Translates to: RMSASTWEAVAEPGR*PGPDHGLSGAGHQG
Trigger: ACCCTGGTGCCCTGCACCAGACAGGCCGTGGTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR CCA 90 bp GGGCATGACAGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTaGGGAAGGATGGCGGGAGAGGGCTGGACAGGCCCCCGCTGCCCA +
Preference number: 1 (lower is better)
Translates to: GHDRQVAGDKAVDVT*GRMAGEGWTGPRCP
Trigger: TGGGCAGCGGGGGCCTGTCCAGCCCTCTCCCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGTCATGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR CCA 90 bp CCTCAGGGGGTGGGCATGACAGGCAGGTCGCTGGTGACAAGGCAGTaGACGTCACTTGGGGAAGGATGGCGGGAGAGGGCTGGACAGGCC +
Preference number: 1 (lower is better)
Translates to: PQGVGMTGRSLVTRQ*TSLGEGWRERAGQA
Trigger: GGCCTGTCCAGCCCTCTCCCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGTCATGCCCACCCCCTGAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR GCA 90 bp TCTCGGAGAATCAAGGCGAAGCGCTCGTCTCCTTCCCTAGGAAGGTaGCAATTCTTCCTCCCGCCCCACTCTCTCCAGAGCCCCGAGACC +
Preference number: 1 (lower is better)
Translates to: SRRIKAKRSSPSLGR*QFFLPPHSLQSPET
Trigger: GGTCTCGGGGCTCTGGAGAGAGTGGGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTCGCCTTGATTCTCCGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR TCA 90 bp TTGCATAACTGTGGCCTCGAGGGCCACTCACTTGTTTGGACTGAGTaGTGGTCACAGTTTCACGACACAGCAACAGACACCACACACAGG +
Preference number: 1 (lower is better)
Translates to: LHNCGLEGHSLVWTE*WSQFHDTATDTTHR
Trigger: CCTGTGTGTGGTGTCTGTTGCTGTGTCGTGAAACTGTGACCATCACTCAGTCCAAACAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR GCA 90 bp TCGAGTTTAAAAAGCAGTGACGTCGTTATGACACACACTGAAAGTTaGATAACTGTGGCCTCGAGGGCCACTCACTTGTTTGGACTGAGT +
Preference number: 1 (lower is better)
Translates to: SSLKSSDVVMTHTES*ITVASRATHLFGLS
Trigger: ACTCAGTCCAAACAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAACGACGTCACTGCTTTTTAAACTCGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR TCA 90 bp TCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTGACCAGGCAGGTCGCTGGTaGCAAGGCAGTGGACGTCAC +
Preference number: 2 (lower is better)
Translates to: SASTWEAVAEPGRWPGPDQAGRW*QGSGRH
Trigger: GTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTG...GTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR GCA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGTGTGGCGGCCTCGTaGAGAGTGGAAGGGAGCGGG +
Preference number: 2 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPGVAAS*RVEGSG
Trigger: CCCGCTCCCTTCCACTCTGCACGAGGCCGCCACACC...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR GCA 90 bp CCGGGTCCGAGGCTGCTGCGCTGGGCTCGGTGCCTCCTAATTTCTGCAGATTCTAGAGAGCCCAGGGATTaGCAGGGAGGGCCGGGCCGG +
Preference number: 2 (lower is better)
Translates to: PGPRLLRWARCLLISADSREPRD*QGGPGR
Trigger: CCGGCCCGGCCCTCCCTGGCAATCCCTGGGCTCTCT...AGAATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGGACCCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CCA 90 bp ACAGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTGGGGAAGGATGGCGGTGCCGTCTCCCAGCCTaGGAAGGGGCTGGCAGGGGG +
Preference number: 2 (lower is better)
Translates to: TGRSLVTRQWTSLGEGWRCRLPA*EGAGRG
Trigger: CCCCCTGCCAGCCCCTTCCCAGGCTGGGAGACGGCA...CCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CCA 90 bp ACAGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTGGGGAAGGATGGCGGCAGGCGGCAGGCACATaGGGCTGGGAGGGACCTAGG +
Preference number: 2 (lower is better)
Translates to: TGRSLVTRQWTSLGEGWRQAAGT*GWEGPR
Trigger: CCTAGGTCCCTCCCAGCCCCATGTGCCTGCCGCCTG...CCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR GCA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGTGTTAGGGTCCCCATaGTTCCTCAGGGGGTGGGCA +
Preference number: 2 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPVLGSP*FLRGWA
Trigger: TGCCCACCCCCTGAGGAAGCATGGGGACCCTAACAC...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CCA 90 bp GAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCGCCCCACTCCAGGGGTTCCCGGGTTaGGGGGACAGGGATGTGTGG +
Preference number: 2 (lower is better)
Translates to: EALVSFPRKVPILPPAPLQGFPG*GDRDVW
Trigger: CCACACATCCCTGTCCCCCCAACCCGGGAACCCCTG...GAGTGGGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR GCA 90 bp GAGGGGCCGGGCCACCTCCATAAGACCCCTGAACTTGCTCCATTCACAGATATTAGGCTCGGCCTCCCATaGGCCACCCTCGCCCACCAC +
Preference number: 2 (lower is better)
Translates to: EGPGHLHKTPELAPFTDIRLGLP*ATLAHH
Trigger: GTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGCCT...AATATCTGTGAATGGAGCAAGTTCAGGGGTCTTATGGAGGTGGCCCGGCCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
3UTR-3UTR CCA 90 bp ACAGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTGGGGAAGGATGGCGGCCGCTGCCCACCGCCTaGCGCATGCAAACACACTTA +
Preference number: 2 (lower is better)
Translates to: TGRSLVTRQWTSLGEGWRPLPTA*RMQTHL
Trigger: TAAGTGTGTTTGCATGCGCCAGGCGGTGGGCAGCGG...CCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CCA 90 bp CCGAGGCTGCTGCGCTGGGCTCGGTGCCTCCTAATTTCTGCAGATTCTAAGGCCGCCTGTGAGGTAGATTaGCACAGCTGCCCCCACACC +
Preference number: 2 (lower is better)
Translates to: PRLLRWARCLLISADSKAACEVD*HSCPHT
Trigger: GGTGTGGGGGCAGCTGTGCCAATCTACCTCACAGGC...GGCCTTAGAATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CCA 90 bp GCCCACCGCCTGGCGCATGCAAACACACTTAAAGCACTTCTCGGAGGCTTCTCGATGCCCGGCAGGGGGTaGGCCTGTGAGGTAGATTGG +
Preference number: 2 (lower is better)
Translates to: AHRLAHANTLKALLGGFSMPGRG*ACEVDW
Trigger: CCAATCTACCTCACAGGCCCACCCCCTGCCGGGCAT...CGAGAAGCCTCCGAGAAGTGCTTTAAGTGTGTTTGCATGCGCCAGGCGGTGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR GCA 90 bp GTTATGACACACACTGAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTTGAGGCTCGGCCTCCCATaGGCCACCCTCGCCCACCAC +
Preference number: 2 (lower is better)
Translates to: VMTHTESCITVASRATHLRLGLP*ATLAHH
Trigger: GTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGCCT...CAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CCA 90 bp GAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCGCCCCACTCTGGGCCCCAGAGATCTaGGGTTCTCCAAGTCAGCAT +
Preference number: 2 (lower is better)
Translates to: EALVSFPRKVPILPPAPLWAPEI*GSPSQH
Trigger: ATGCTGACTTGGAGAACCCCAGATCTCTGGGGCCCA...GAGTGGGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR TCA 90 bp GTTATGACACACACTGAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTTGAGCCTTCCCTGCCCATaGTCCCACGGCATGCCCGGC +
Preference number: 2 (lower is better)
Translates to: VMTHTESCITVASRATHLSLPCP*SHGMPG
Trigger: GCCGGGCATGCCGTGGGATCATGGGCAGGGAAGGCT...CAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CCA 90 bp AATCAAGGCGAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCACCCTCAGGGTGTTCTaGCTGGGGGTGCTAAGCAGC +
Preference number: 2 (lower is better)
Translates to: NQGEALVSFPRKVPILPPTLRVF*LGVLSS
Trigger: GCTGCTTAGCACCCCCAGCCAGAACACCCTGAGGGT...GGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTCGCCTTGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR CAA 90 bp ACACACACTGAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTaGTTTGGACTGAGTGATGGTCACAGTTTCACGACACAGCAACAG +
Preference number: 2 (lower is better)
Translates to: THTESCITVASRATH*FGLSDGHSFTTQQQ
Trigger: CTGTTGCTGTGTCGTGAAACTGTGACCATCACTCAGTCCAAACAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CCA 90 bp TTTATATTCATCTGTATAAACATATCCGCTAAGGCAAACGCAATCCGGGTCCGATCCCATTTCAGTAGATaGAAGACGCAGAGGAGGAAA +
Preference number: 2 (lower is better)
Translates to: FIFICINISAKANAIRVRSHFSR*KTQRRK
Trigger: TTTCCTCCTCTGCGTCTTCCATCTACTGAAATGGGA...TCGGACCCGGATTGCGTTTGCCTTAGCGGATATGTTTATACAGATGAATATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR TCA 72 bp GGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTaGCCACGGCCTGTCTGGTGCAGGGCACCAGGGTGT +
Preference number: 3 (lower is better)
Translates to: GSCGRTRPVAWA*PRPVWCRAPGC
Trigger: ACACCCTGGTGCCCTGCACCAGACAGGCCGTGGTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR CCA 72 bp GCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTaGCCTGGGCCTGACCACGGCCTGTCTGGTGCAGGG +
Preference number: 3 (lower is better)
Translates to: ASTWEAVAEPGR*PGPDHGLSGAG
Trigger: CCCTGCACCAGACAGGCCGTGGTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR CCA 72 bp CAGGCACACGCATGTCAGCAAGCACGTGGGAAGCTGTaGCAGAACCCGGCCGGTGGCCTGGGCCTGACCACG +
Preference number: 3 (lower is better)
Translates to: QAHACQQARGKL*QNPAGGLGLTT
Trigger: CGTGGTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGTGCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR CCA 72 bp AGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTaGGGAAGGATGGCGGGAGAGGGCTGGACAGGCCCC +
Preference number: 3 (lower is better)
Translates to: RQVAGDKAVDVT*GRMAGEGWTGP
Trigger: GGGGCCTGTCCAGCCCTCTCCCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR CCA 72 bp GTGGGCATGACAGGCAGGTCGCTGGTGACAAGGCAGTaGACGTCACTTGGGGAAGGATGGCGGGAGAGGGCT +
Preference number: 3 (lower is better)
Translates to: VGMTGRSLVTRQ*TSLGEGWRERA
Trigger: AGCCCTCTCCCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGTCATGCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CAA 90 bp CCGGGTCCGAGGCTGCTGCGCTGGGCTCGGTGCCTCCTAATTTCTGCAGATTCTGGCAGTGGACGTCACTaGGGGAAGGATGGCGGGAGA +
Preference number: 3 (lower is better)
Translates to: PGPRLLRWARCLLISADSGSGRH*GKDGGR
Trigger: TCTCCCGCCATCCTTCCCCAAGTGACGTCCACTGCC...AGAATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGGACCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR-3UTR CAA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTATAAGACCCCTGAACTaGCTCCATTCACAGATATTT +
Preference number: 3 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPIRPLN*LHSQIF
Trigger: AAATATCTGTGAATGGAGCAAGTTCAGGGGTCTTAT...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR TCA 72 bp TGTGGCCTCGAGGGCCACTCACTTGTTTGGACTGAGTaGTGGTCACAGTTTCACGACACAGCAACAGACACC +
Preference number: 3 (lower is better)
Translates to: CGLEGHSLVWTE*WSQFHDTATDT
Trigger: GGTGTCTGTTGCTGTGTCGTGAAACTGTGACCATCACTCAGTCCAAACAAGTGAGTGGCCCTCGAGGCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR GCA 72 bp AAAAGCAGTGACGTCGTTATGACACACACTGAAAGTTaGATAACTGTGGCCTCGAGGGCCACTCACTTGTTT +
Preference number: 3 (lower is better)
Translates to: KSSDVVMTHTES*ITVASRATHLF
Trigger: AAACAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAACGACGTCACTGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGGCACGTGGGAAGCTGTaGCAGAACCCGGCCGGTGGC +
Preference number: 4 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRAARGKL*QNPAGG
Trigger: GCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGC...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GGCAGGGAGCCAGCGCCGGTGTGGCGGCCTCGTGCAGAGTGGAAGGGAGCGGGGCCCCGGCCGCCGCCTTaGGGAAGATCAGGAGGAACT +
Preference number: 4 (lower is better)
Translates to: GREPAPVWRPRAEWKGAGPRPPP*GRSGGT
Trigger: AGTTCCTCCTGATCTTCCGCAAGGCGGCGGCCGGGG...CCCCGCTCCCTTCCACTCTGCACGAGGCCGCCACACCGGCGCTGGCTCCCTGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR GCA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGGCCATCCTGATCCTCTaGTTCCTGTCCGGGGAGCCC +
Preference number: 4 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRAAILIL*FLSGEP
Trigger: GGGCTCCCCGGACAGGAAGCAGAGGATCAGGATGGC...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR CCA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGATGCCCGGCAGGGGGTaGGCCTGTGAGGTAGATTGG +
Preference number: 4 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRAMPGRG*ACEVDW
Trigger: CCAATCTACCTCACAGGCCCACCCCCTGCCGGGCAT...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGAAGGCCGCTTTCCGCTaGTTCATCTCCTCCGCCTGC +
Preference number: 4 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRAKAAFR*FISSAC
Trigger: GCAGGCGGAGGAGATGAAGCAGCGGAAAGCGGCCTT...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR GCA 90 bp GGCAGGGAGCCAGCGCCGGTGTGGCGGCCTCGTGCAGAGTGGAAGGGAGCGGGGAGCAGGGCGGTCGGCTaGAGCCCCCGCTACTTAAAG +
Preference number: 4 (lower is better)
Translates to: GREPAPVWRPRAEWKGAGSRAVG*SPRYLK
Trigger: CTTTAAGTAGCGGGGGCTGCAGCCGACCGCCCTGCT...CCCCGCTCCCTTCCACTCTGCACGAGGCCGCCACACCGGCGCTGGCTCCCTGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CCA 90 bp TCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTGACGCTCGTCCGTGGCCATaGTGGCCCGCGCGGCACTCG +
Preference number: 4 (lower is better)
Translates to: SASTWEAVAEPGRWPGPDARPWP*WPARHS
Trigger: CGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGC...GTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGGGGAGTCGCTCAAGCTaGTGCCATCCTGATCCTCTG +
Preference number: 4 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRAGSRSS*CHPDPL
Trigger: CAGAGGATCAGGATGGCAGCAGCTTGAGCGACTCCC...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR CCA 90 bp CTCCAGAGCCCCGAGACCCTCAGGGTGTTCTGGCTGGGGGTGCTAAGCAGCGGTTGGCCAGCTCGTCCGTaGCCATGGTGGCCCGCGCGG +
Preference number: 4 (lower is better)
Translates to: LQSPETLRVFWLGVLSSGWPARP*PWWPAR
Trigger: CCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCA...ACCGCTGCTTAGCACCCCCAGCCAGAACACCCTGAGGGTCTCGGGGCTCTGGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp TCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTGACCGGCCTCGTGCAGAGTaGAAGGGAGCGGGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: SASTWEAVAEPGRWPGPDRPRAE*KGAGRG
Trigger: GCCCCTCCCCGCTCCCTTCCACTCTGCACGAGGCCG...GTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGAGCGGCTGGACACGTTaGTGGCCTGGACCTATATTC +
Preference number: 4 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRASGWTR*WPGPIF
Trigger: GAATATAGGTCCAGGCCATCAACGTGTCCAGCCGCT...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR CCA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGCGCGGCACTCGCCTTaGCCGGGCCCCTGCTCTCAG +
Preference number: 4 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPARHSP*PGPCSQ
Trigger: CTGAGAGCAGGGGCCCGGCCAAGGCGAGTGCCGCGC...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGCGGTGCGGCCTGCTaGAGGAGGGCAGGGGTTCCC +
Preference number: 4 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPGGAAC*RRAGVP
Trigger: GGGAACCCCTGCCCTCCTCCAGCAGGCCGCACCGCC...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGTGGGCCCCAGAGATCTaGGGTTCTCCAAGTCAGCAT +
Preference number: 4 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRAWAPEI*GSPSQH
Trigger: ATGCTGACTTGGAGAACCCCAGATCTCTGGGGCCCA...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTCGCCGATGCCCTGGTTaGGGTCTGCGCGCCGCAGCA +
Preference number: 4 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPRRCPG*GLRAAA
Trigger: TGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCG...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp ACAGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTGGGGAAGGATGGCGGCCGGTGGCCTGGGCCTaGCCACGGCCTGTCTGGTGC +
Preference number: 4 (lower is better)
Translates to: TGRSLVTRQWTSLGEGWRPVAWA*PRPVWC
Trigger: GCACCAGACAGGCCGTGGTCAGGCCCAGGCCACCGG...CCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGTTCATCTCCTCCGCCTaGTTCTTCCTTTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRAFISSA*FFLSSC
Trigger: GCAGGAGGAAAGGAAGAAGCAGGCGGAGGAGATGAA...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR GCA 90 bp CTCCAGAGCCCCGAGACCCTCAGGGTGTTCTGGCTGGGGGTGCTAAGCAGCGGTCAAGTCAGCATGGGGTaGTGGGGGCCTGCCCGGGTC +
Preference number: 4 (lower is better)
Translates to: LQSPETLRVFWLGVLSSGQVSMG*WGPARV
Trigger: GACCCGGGCAGGCCCCCAGCACCCCATGCTGACTTG...ACCGCTGCTTAGCACCCCCAGCCAGAACACCCTGAGGGTCTCGGGGCTCTGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GACCACGGCCTGTCTGGTGCAGGGCACCAGGGTGTTAGGGTCCCCATGCTTCCTATCCGGGTCCGAGGCTaGTGCGCTGGGCTCGGTGCC +
Preference number: 4 (lower is better)
Translates to: DHGLSGAGHQGVRVPMLPIRVRG*CAGLGA
Trigger: GGCACCGAGCCCAGCGCAGCAGCCTCGGACCCGGAT...AGGAAGCATGGGGACCCTAACACCCTGGTGCCCTGCACCAGACAGGCCGTGGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp CCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGGTCGGCTGCAGCCCCCGCTAAGTCGCTCAAGCTGCTaGCATCCTGATCCTCTGCTT +
Preference number: 4 (lower is better)
Translates to: PSPTTLGPEQGGRLQPPLSRSSC*HPDPLL
Trigger: AAGCAGAGGATCAGGATGGCAGCAGCTTGAGCGACT...TAGCGGGGGCTGCAGCCGACCGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR CCA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTCGCGCCGCAGCAGCTTaGCGCTCAGCTCGCAGTCCG +
Preference number: 4 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPRAAAA*RSARSP
Trigger: CGGACTGCGAGCTGAGCGCCAAGCTGCTGCGGCGCG...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp TCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTGACCAGGGGTTCCCGGGTTaGGGGGACAGGGATGTGTGG +
Preference number: 4 (lower is better)
Translates to: SASTWEAVAEPGRWPGPDQGFPG*GDRDVW
Trigger: CCACACATCCCTGTCCCCCCAACCCGGGAACCCCTG...GTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp CCGGGTCCGAGGCTGCTGCGCTGGGCTCGGTGCCTCCTAATTTCTGCAGATTCTGCAGAACCCGGCCGGTaGCCTGGGCCTGACCACGGC +
Preference number: 4 (lower is better)
Translates to: PGPRLLRWARCLLISADSAEPGR*PGPDHG
Trigger: GCCGTGGTCAGGCCCAGGCCACCGGCCGGGTTCTGC...AGAATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGGACCCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GACCACGGCCTGTCTGGTGCAGGGCACCAGGGTGTTAGGGTCCCCATGCTTCCTCCCTCGCCCTCCATCTaGAGCCGCCGGCTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: DHGLSGAGHQGVRVPMLPPSPSI*SRRLSL
Trigger: CAAGCTGAGCCGGCGGCTGCAGATGGAGGGCGAGGG...AGGAAGCATGGGGACCCTAACACCCTGGTGCCCTGCACCAGACAGGCCGTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGCCCTGGTTGAGGTCTaGGCGCCGCAGCAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPALVEV*APQQLG
Trigger: GCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGC...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp CTCCAGAGCCCCGAGACCCTCAGGGTGTTCTGGCTGGGGGTGCTAAGCAGCGGTCCCCGGCCGCCGCCTTaGGGAAGATCAGGAGGAACT +
Preference number: 4 (lower is better)
Translates to: LQSPETLRVFWLGVLSSGPRPPP*GRSGGT
Trigger: AGTTCCTCCTGATCTTCCGCAAGGCGGCGGCCGGGG...ACCGCTGCTTAGCACCCCCAGCCAGAACACCCTGAGGGTCTCGGGGCTCTGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp TCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTGACAGCAGGGCGGTCGGCTaGAGCCCCCGCTACTTAAAG +
Preference number: 4 (lower is better)
Translates to: SASTWEAVAEPGRWPGPDSRAVG*SPRYLK
Trigger: CTTTAAGTAGCGGGGGCTGCAGCCGACCGCCCTGCT...GTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp ACAGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTGGGGAAGGATGGCGGGGGGTGCTGGGGGCCTaGCCGGGTCCCTTCACCAGA +
Preference number: 4 (lower is better)
Translates to: TGRSLVTRQWTSLGEGWRGVLGA*PGPFTR
Trigger: TCTGGTGAAGGGACCCGGGCAGGCCCCCAGCACCCC...CCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGT
67% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GACCACGGCCTGTCTGGTGCAGGGCACCAGGGTGTTAGGGTCCCCATGCTTCCTCATGATCCCACGGCATaGCCGGCAGGGGGTGGGCCT +
Preference number: 4 (lower is better)
Translates to: DHGLSGAGHQGVRVPMLPHDPTA*PAGGGP
Trigger: AGGCCCACCCCCTGCCGGGCATGCCGTGGGATCATG...AGGAAGCATGGGGACCCTAACACCCTGGTGCCCTGCACCAGACAGGCCGTGGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCGCCCCACTCCGTCCGTGGCCATGGTaGCCCGCGCGGCACTCGCCT +
Preference number: 4 (lower is better)
Translates to: EALVSFPRKVPILPPAPLRPWPW*PARHSP
Trigger: AGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACG...GAGTGGGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GGCAGGGAGCCAGCGCCGGTGTGGCGGCCTCGTGCAGAGTGGAAGGGAGCGGGGGACACGTTGATGGCCTaGACCTTGGCCTCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: GREPAPVWRPRAEWKGAGDTLMA*TLASKK
Trigger: CTTCTTTGAGGCCAAGGTCCAGGCCATCAACGTGTC...CCCCGCTCCCTTCCACTCTGCACGAGGCCGCCACACCGGCGCTGGCTCCCTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp CCGGGTCCGAGGCTGCTGCGCTGGGCTCGGTGCCTCCTAATTTCTGCAGATTCTTGCCGTCTCCCAGCCTaGGAAGGGGCTGGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: PGPRLLRWARCLLISADSCRLPA*EGAGRG
Trigger: CCCCCTGCCAGCCCCTTCCCAGGCTGGGAGACGGCA...AGAATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGGACCCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp CCGGGTCCGAGGCTGCTGCGCTGGGCTCGGTGCCTCCTAATTTCTGCAGATTCTGGTGTGGCGGCCTCGTaGAGAGTGGAAGGGAGCGGG +
Preference number: 4 (lower is better)
Translates to: PGPRLLRWARCLLISADSGVAAS*RVEGSG
Trigger: CCCGCTCCCTTCCACTCTGCACGAGGCCGCCACACC...AGAATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGGACCCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCGCCCCACTCAGAGAGCCCAGGGATTaGCAGGGAGGGCCGGGCCGG +
Preference number: 4 (lower is better)
Translates to: EALVSFPRKVPILPPAPLREPRD*QGGPGR
Trigger: CCGGCCCGGCCCTCCCTGGCAATCCCTGGGCTCTCT...GAGTGGGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp TTAGCCCCTTGGGTCCCACTCTGTGGGGGCAGCCCTGATTCTATCTCTTCTGCCTGGACAGGCCCCCGCTaGCCACCGCCTGGCGCATGC +
Preference number: 4 (lower is better)
Translates to: LAPWVPLCGGSPDSISSAWTGPR*PPPGAC
Trigger: GCATGCGCCAGGCGGTGGGCAGCGGGGGCCTGTCCA...GGCAGAAGAGATAGAATCAGGGCTGCCCCCACAGAGTGGGACCCAAGGGGCTAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp TTAGCCCCTTGGGTCCCACTCTGTGGGGGCAGCCCTGATTCTATCTCTTCTGCCCGGGTCCGAGGCTGCTaGGCTGGGCTCGGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: LAPWVPLCGGSPDSISSARVRGC*AGLGAS
Trigger: GGAGGCACCGAGCCCAGCGCAGCAGCCTCGGACCCG...GGCAGAAGAGATAGAATCAGGGCTGCCCCCACAGAGTGGGACCCAAGGGGCTAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp CCGAGGCTGCTGCGCTGGGCTCGGTGCCTCCTAATTTCTGCAGATTCTAAGGCCCAGGCGGCAGGCACATaGGGCTGGGAGGGACCTAGG +
Preference number: 4 (lower is better)
Translates to: PRLLRWARCLLISADSKAQAAGT*GWEGPR
Trigger: CCTAGGTCCCTCCCAGCCCCATGTGCCTGCCGCCTG...GGCCTTAGAATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp CTCCAGAGCCCCGAGACCCTCAGGGTGTTCTGGCTGGGGGTGCTAAGCAGCGGTGCAGTGGACGTCACTTaGGGAAGGATGGCGGGAGAG +
Preference number: 4 (lower is better)
Translates to: LQSPETLRVFWLGVLSSGAVDVT*GRMAGE
Trigger: CTCTCCCGCCATCCTTCCCCAAGTGACGTCCACTGC...ACCGCTGCTTAGCACCCCCAGCCAGAACACCCTGAGGGTCTCGGGGCTCTGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp TTCTCGGAGGCTTCTCGGAGAATCAAGGCGAAGCGCTCGTCTCCTTCCCTAGGAAGGCTCGGCCTCCCATaGGCCACCCTCGCCCACCAC +
Preference number: 4 (lower is better)
Translates to: FSEASRRIKAKRSSPSLGRLGLP*ATLAHH
Trigger: GTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGCCT...TCCTAGGGAAGGAGACGAGCGCTTCGCCTTGATTCTCCGAGAAGCCTCCGAGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp TCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTGACATGTCAGCAAGCACGTaGGAAGCTGTGGCAGAACCC +
Preference number: 4 (lower is better)
Translates to: SASTWEAVAEPGRWPGPDMSAST*EAVAEP
Trigger: GGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACAT...GTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAGGGGCCGGGCCACCTCCATAAGACCCCTGAACTTGCTCCATTCACAGATATTAGAGAGCCCAGGGATTaGCAGGGAGGGCCGGGCCGG +
Preference number: 4 (lower is better)
Translates to: EGPGHLHKTPELAPFTDIREPRD*QGGPGR
Trigger: CCGGCCCGGCCCTCCCTGGCAATCCCTGGGCTCTCT...AATATCTGTGAATGGAGCAAGTTCAGGGGTCTTATGGAGGTGGCCCGGCCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CCA 90 bp GAGGGGCCGGGCCACCTCCATAAGACCCCTGAACTTGCTCCATTCACAGATATTCGGCCTCGTGCAGAGTaGAAGGGAGCGGGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: EGPGHLHKTPELAPFTDIRPRAE*KGAGRG
Trigger: GCCCCTCCCCGCTCCCTTCCACTCTGCACGAGGCCG...AATATCTGTGAATGGAGCAAGTTCAGGGGTCTTATGGAGGTGGCCCGGCCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR TCA 90 bp AATCAAGGCGAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCAGCCTTCCCTGCCCATaGTCCCACGGCATGCCCGGC +
Preference number: 4 (lower is better)
Translates to: NQGEALVSFPRKVPILPPSLPCP*SHGMPG
Trigger: GCCGGGCATGCCGTGGGATCATGGGCAGGGAAGGCT...GGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTCGCCTTGATT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp TTAGCCCCTTGGGTCCCACTCTGTGGGGGCAGCCCTGATTCTATCTCTTCTGCCCAGGCAGGTCGCTGGTaGCAAGGCAGTGGACGTCAC +
Preference number: 4 (lower is better)
Translates to: LAPWVPLCGGSPDSISSAQAGRW*QGSGRH
Trigger: GTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTG...GGCAGAAGAGATAGAATCAGGGCTGCCCCCACAGAGTGGGACCCAAGGGGCTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCGCCCCACTCAAGGCCGCTTTCCGCTaGTTCATCTCCTCCGCCTGC +
Preference number: 4 (lower is better)
Translates to: EALVSFPRKVPILPPAPLKAAFR*FISSAC
Trigger: GCAGGCGGAGGAGATGAAGCAGCGGAAAGCGGCCTT...GAGTGGGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GAGGGGCCGGGCCACCTCCATAAGACCCCTGAACTTGCTCCATTCACAGATATTCAGGCGGCAGGCACATaGGGCTGGGAGGGACCTAGG +
Preference number: 4 (lower is better)
Translates to: EGPGHLHKTPELAPFTDIQAAGT*GWEGPR
Trigger: CCTAGGTCCCTCCCAGCCCCATGTGCCTGCCGCCTG...AATATCTGTGAATGGAGCAAGTTCAGGGGTCTTATGGAGGTGGCCCGGCCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CCA 90 bp GACCACGGCCTGTCTGGTGCAGGGCACCAGGGTGTTAGGGTCCCCATGCTTCCTCTGGTGACAAGGCAGTaGACGTCACTTGGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: DHGLSGAGHQGVRVPMLPLVTRQ*TSLGEG
Trigger: TCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAG...AGGAAGCATGGGGACCCTAACACCCTGGTGCCCTGCACCAGACAGGCCGTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GACCACGGCCTGTCTGGTGCAGGGCACCAGGGTGTTAGGGTCCCCATGCTTCCTTTCATCTCCTCCGCCTaGTTCTTCCTTTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: DHGLSGAGHQGVRVPMLPFISSA*FFLSSC
Trigger: GCAGGAGGAAAGGAAGAAGCAGGCGGAGGAGATGAA...AGGAAGCATGGGGACCCTAACACCCTGGTGCCCTGCACCAGACAGGCCGTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GCCCACCGCCTGGCGCATGCAAACACACTTAAAGCACTTCTCGGAGGCTTCTCGGCCTGTGAGGTAGATTaGCACAGCTGCCCCCACACC +
Preference number: 4 (lower is better)
Translates to: AHRLAHANTLKALLGGFSACEVD*HSCPHT
Trigger: GGTGTGGGGGCAGCTGTGCCAATCTACCTCACAGGC...CGAGAAGCCTCCGAGAAGTGCTTTAAGTGTGTTTGCATGCGCCAGGCGGTGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp TTAGCCCCTTGGGTCCCACTCTGTGGGGGCAGCCCTGATTCTATCTCTTCTGCCACCCTCAGGGTGTTCTaGCTGGGGGTGCTAAGCAGC +
Preference number: 4 (lower is better)
Translates to: LAPWVPLCGGSPDSISSATLRVF*LGVLSS
Trigger: GCTGCTTAGCACCCCCAGCCAGAACACCCTGAGGGT...GGCAGAAGAGATAGAATCAGGGCTGCCCCCACAGAGTGGGACCCAAGGGGCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp TTCTCGGAGGCTTCTCGGAGAATCAAGGCGAAGCGCTCGTCTCCTTCCCTAGGACCGAGGCTGCTGCGCTaGGCTCGGTGCCTCCTAATT +
Preference number: 4 (lower is better)
Translates to: FSEASRRIKAKRSSPSLGPRLLR*ARCLLI
Trigger: AATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGG...TCCTAGGGAAGGAGACGAGCGCTTCGCCTTGATTCTCCGAGAAGCCTCCGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp AATCAAGGCGAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCAGCGGCTGGACACGTTaGTGGCCTGGACCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: NQGEALVSFPRKVPILPPSGWTR*WPGPWP
Trigger: AGGCCAAGGTCCAGGCCATCAACGTGTCCAGCCGCT...GGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTCGCCTTGATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp TCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTGACCTCACTTGTTTGGACTaGGTGATGGTCACAGTTTCA +
Preference number: 4 (lower is better)
Translates to: SASTWEAVAEPGRWPGPDLTCLD*VMVTVS
Trigger: TGAAACTGTGACCATCACTCAGTCCAAACAAGTGAG...GTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GTTATGACACACACTGAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTTGGAGCCAGCGCCGGTGTaGCGGCCTCGTGCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: VMTHTESCITVASRATHLEPAPV*RPRAEW
Trigger: CCACTCTGCACGAGGCCGCCACACCGGCGCTGGCTC...CAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp TCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTGGGCCTGACTCCCATTTCAGTAGATaGAAGACGCAGAGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: SASTWEAVAEPGRWPGPDSHFSR*KTQRRK
Trigger: TTTCCTCCTCTGCGTCTTCCATCTACTGAAATGGGA...GTCAGGCCCAGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GACCACGGCCTGTCTGGTGCAGGGCACCAGGGTGTTAGGGTCCCCATGCTTCCTACACACACTGAAAGTTaGATAACTGTGGCCTCGAGG +
Preference number: 4 (lower is better)
Translates to: DHGLSGAGHQGVRVPMLPTHTES*ITVASR
Trigger: CCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGT...AGGAAGCATGGGGACCCTAACACCCTGGTGCCCTGCACCAGACAGGCCGTGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTCGTTATGACACACACTaGAAGTTGCATAACTGTGGC +
Preference number: 4 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPRYDTH*KLHNCG
Trigger: GCCACAGTTATGCAACTTTCAGTGTGTGTCATAACG...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp GTTATGACACACACTGAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTTGCCTCCTGCTCTGCCTTaGTCTCCTCCTCGAAGCGGC +
Preference number: 4 (lower is better)
Translates to: VMTHTESCITVASRATHLPPALP*SPPRSG
Trigger: GCCGCTTCGAGGAGGAGATCAAGGCAGAGCAGGAGG...CAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GCCCACCGCCTGGCGCATGCAAACACACTTAAAGCACTTCTCGGAGGCTTCTCGTACTTAAAGGTGGACTaGAGCTCCTTGAAGGCCGCT +
Preference number: 4 (lower is better)
Translates to: AHRLAHANTLKALLGGFSYLKVD*SSLKAA
Trigger: AGCGGCCTTCAAGGAGCTGCAGTCCACCTTTAAGTA...CGAGAAGCCTCCGAGAAGTGCTTTAAGTGTGTTTGCATGCGCCAGGCGGTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAGGGGCCGGGCCACCTCCATAAGACCCCTGAACTTGCTCCATTCACAGATATTCCTATATTCTGTGGCTaGTGCAAAGCAAGGGCGCTC +
Preference number: 4 (lower is better)
Translates to: EGPGHLHKTPELAPFTDIPIFCG*CKARAL
Trigger: GAGCGCCCTTGCTTTGCAGCAGCCACAGAATATAGG...AATATCTGTGAATGGAGCAAGTTCAGGGGTCTTATGGAGGTGGCCCGGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR TCA 90 bp GTTATGACACACACTGAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTTGCTGTGGGGGCAGCCCTaGTTCTATCTCTTCTGCCGT +
Preference number: 4 (lower is better)
Translates to: VMTHTESCITVASRATHLLWGQP*FYLFCR
Trigger: ACGGCAGAAGAGATAGAATCAGGGCTGCCCCCACAG...CAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp TTCTCGGAGGCTTCTCGGAGAATCAAGGCGAAGCGCTCGTCTCCTTCCCTAGGAGCAGTGACGTCGTTATaGCACACACTGAAAGTTGCA +
Preference number: 4 (lower is better)
Translates to: FSEASRRIKAKRSSPSLGAVTSL*HTLKVA
Trigger: TGCAACTTTCAGTGTGTGTCATAACGACGTCACTGC...TCCTAGGGAAGGAGACGAGCGCTTCGCCTTGATTCTCCGAGAAGCCTCCGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp TTTATATTCATCTGTATAAACATATCCGCTAAGGCAAACGCAATCCGGGTCCGAGCCGCCGGCTCAGCTTaGTGGCCAGCTCGTCCGTGG +
Preference number: 4 (lower is better)
Translates to: FIFICINISAKANAIRVRAAGSA*WPARPW
Trigger: CCACGGACGAGCTGGCCACCAAGCTGAGCCGGCGGC...TCGGACCCGGATTGCGTTTGCCTTAGCGGATATGTTTATACAGATGAATATAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACGGCTCGCCGATGCCCTaGTTGAGGTCTGCGCGCCGC +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDGSPMP*LRSARR
Trigger: GCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCC...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACGAGCCAGCGCCGGTGTaGCGGCCTCGTGCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDEPAPV*RPRAEW
Trigger: CCACTCTGCACGAGGCCGCCACACCGGCGCTGGCTC...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CCA 90 bp GAGGGGCCGGGCCACCTCCATAAGACCCCTGAACTTGCTCCATTCACAGATATTTGGACCTATATTCTGTaGCTGCTGCAAAGCAAGGGC +
Preference number: 4 (lower is better)
Translates to: EGPGHLHKTPELAPFTDIWTYIL*LLQSKG
Trigger: GCCCTTGCTTTGCAGCAGCCACAGAATATAGGTCCA...AATATCTGTGAATGGAGCAAGTTCAGGGGTCTTATGGAGGTGGCCCGGCCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR TCA 90 bp TTTATATTCATCTGTATAAACATATCCGCTAAGGCAAACGCAATCCGGGTCCGAACTCGGTGTAGGGGTTaGAGACGCGGCGGCTGGGCG +
Preference number: 4 (lower is better)
Translates to: FIFICINISAKANAIRVRTRCRG*RRGGWA
Trigger: CGCCCAGCCGCCGCGTCTTCAACCCCTACACCGAGT...TCGGACCCGGATTGCGTTTGCCTTAGCGGATATGTTTATACAGATGAATATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACGGTGTGGCGGCCTCGTaGAGAGTGGAAGGGAGCGGG +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDGVAAS*RVEGSG
Trigger: CCCGCTCCCTTCCACTCTGCACGAGGCCGCCACACC...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CCA 90 bp CTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACACAGCCGGCTCAGCTTGGTaGCCAGCTCGTCCGTGGCCA +
Preference number: 4 (lower is better)
Translates to: LAPFTDIFRFLVVVPSDTAGSAW*PARPWP
Trigger: TGGCCACGGACGAGCTGGCCACCAAGCTGAGCCGGC...TGTGTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACGTAGATTGGCACAGCTaGCCCCACACCCTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDVDWHS*PHTLPG
Trigger: GCCAGGCAGGGTGTGGGGGCAGCTGTGCCAATCTAC...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000375980.9
3UTR CAA 72 bp GAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTaGTTTGGACTGAGTGATGGTCACAGTTTCACGACA +
Preference number: 4 (lower is better)
Translates to: ESCITVASRATH*FGLSDGHSFTT
Trigger: TGTCGTGAAACTGTGACCATCACTCAGTCCAAACAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp GTTATGACACACACTGAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTTGCGGCATCATACTGCTTaGACATCTTCTCCATGTCCT +
Preference number: 4 (lower is better)
Translates to: VMTHTESCITVASRATHLRHHTA*TSSPCP
Trigger: AGGACATGGAGAAGATGTTCAAGCAGTATGATGCCG...CAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACGTGTTAGGGTCCCCATaGTTCCTCAGGGGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDVLGSP*FLRGWA
Trigger: TGCCCACCCCCTGAGGAAGCATGGGGACCCTAACAC...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp CTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACACACTCCAATTAGCCCCTTaGGTCCCACTCTGTGGGGGC +
Preference number: 4 (lower is better)
Translates to: LAPFTDIFRFLVVVPSDTLQLAP*VPLCGG
Trigger: GCCCCCACAGAGTGGGACCCAAGGGGCTAATTGGAG...TGTGTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CCA 90 bp CTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACACACCGCTGCCCACCGCCTaGCGCATGCAAACACACTTA +
Preference number: 4 (lower is better)
Translates to: LAPFTDIFRFLVVVPSDTPLPTA*RMQTHL
Trigger: TAAGTGTGTTTGCATGCGCCAGGCGGTGGGCAGCGG...TGTGTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp CTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACACACCTTCCCTAGGAAGGTaGCAATTCTTCCTCCCGCCC +
Preference number: 4 (lower is better)
Translates to: LAPFTDIFRFLVVVPSDTPSLGR*QFFLPP
Trigger: GGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGG...TGTGTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp CTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACACACTGCGCTGGGCTCGGTaGCTCCTAATTTCTGCAGAT +
Preference number: 4 (lower is better)
Translates to: LAPFTDIFRFLVVVPSDTLRWAR*LLISAD
Trigger: ATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAG...TGTGTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACCGCCCGGCATCATACTaGTTGAACATCTTCTCCATG +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDRPASY*LNIFSM
Trigger: CATGGAGAAGATGTTCAAGCAGTATGATGCCGGGCG...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR GCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACTACTTAAAGGTGGACTaGAGCTCCTTGAAGGCCGCT +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDYLKVD*SSLKAA
Trigger: AGCGGCCTTCAAGGAGCTGCAGTCCACCTTTAAGTA...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CCA 90 bp CTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACACAACACCCAGTTCCACTTaGCCTCAAAGAAGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: LAPFTDIFRFLVVVPSDTTPSST*PQRSSW
Trigger: CCAAGAGCTTCTTTGAGGCCAAGTGGAACTGGGTGT...TGTGTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR CCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACGACACGTTGATGGCCTaGACCTATATTCTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDDTLMA*TYILWL
Trigger: CAGCCACAGAATATAGGTCCAGGCCATCAACGTGTC...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR TCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACCTTGTTTGGACTGAGTaGTGGTCACAGTTTCACGAC +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDLVWTE*WSQFHD
Trigger: GTCGTGAAACTGTGACCATCACTCAGTCCAAACAAG...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR TCA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACGAGTTTAAAAAGCAGTaGCGTCGTTATGACACACAC +
Preference number: 4 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDEFKKQ*RRYDTH
Trigger: GTGTGTGTCATAACGACGTCACTGCTTTTTAAACTC...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 90 bp TGGCCAGCTCGTCCGTGGCCATGGTGGCCCGCGCGGCACTCGCCTTaGCCGGGCCCCTGCTCTCAGCGCAGCGCCGCCGGCCGCGCTCTT +
Preference number: 5 (lower is better)
Translates to: WPARPWPWWPARHSP*PGPCSQRSAAGRAL
Trigger: AAGAGCGCGGCCGGCGGCGCTGCGCTGAGAGCAGGGGCCCGGCCAAGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 90 bp GCAGCCGCCGGCTCAGCTTGGTGGCCAGCTCGTCCGTGGCCATGGTaGCCCGCGCGGCACTCGCCTTGGCCGGGCCCCTGCTCTCAGCGC +
Preference number: 5 (lower is better)
Translates to: AAAGSAWWPARPWPW*PARHSPWPGPCSQR
Trigger: GCGCTGAGAGCAGGGGCCCGGCCAAGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCACCAAGCTGAGCCGGCGGCTGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS GCA 90 bp GCGGCGGCTGGGCGACTGGGGCTCGCCGATGCCCTGGTTGAGGTCTaGGCGCCGCAGCAGCTTGGCGCTCAGCTCGCAGTCCGCGCTGCC +
Preference number: 5 (lower is better)
Translates to: AAAGRLGLADALVEV*APQQLGAQLAVRAA
Trigger: GGCAGCGCGGACTGCGAGCTGAGCGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCCCAGCCGCCGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 90 bp CCTCCATCTGCAGCCGCCGGCTCAGCTTGGTGGCCAGCTCGTCCGTaGCCATGGTGGCCCGCGCGGCACTCGCCTTGGCCGGGCCCCTGC +
Preference number: 5 (lower is better)
Translates to: PPSAAAGSAWWPARP*PWWPARHSPWPGPC
Trigger: GCAGGGGCCCGGCCAAGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCACCAAGCTGAGCCGGCGGCTGCAGATGGAGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 90 bp TCTGCAGCCGCCGGCTCAGCTTGGTGGCCAGCTCGTCCGTGGCCATaGTGGCCCGCGCGGCACTCGCCTTGGCCGGGCCCCTGCTCTCAG +
Preference number: 5 (lower is better)
Translates to: SAAAGSAWWPARPWP*WPARHSPWPGPCSQ
Trigger: CTGAGAGCAGGGGCCCGGCCAAGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCACCAAGCTGAGCCGGCGGCTGCAGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp CCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGGTCGGCTGCAGCCCCCGCTATCCCCGGCCGCCGCCTaGCGGAAGATCAGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: PSPTTLGPEQGGRLQPPLSPAAA*RKIRRN
Trigger: GTTCCTCCTGATCTTCCGCAAGGCGGCGGCCGGGGA...TAGCGGGGGCTGCAGCCGACCGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS CCA 90 bp GGGTTGAAGACGCGGCGGCTGGGCGACTGGGGCTCGCCGATGCCCTaGTTGAGGTCTGCGCGCCGCAGCAGCTTGGCGCTCAGCTCGCAG +
Preference number: 5 (lower is better)
Translates to: GLKTRRLGDWGSPMP*LRSARRSSLALSSQ
Trigger: CTGCGAGCTGAGCGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCCCAGCCGCCGCGTCTTCAACCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS GCA 90 bp CGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGGTCGGCTaGAGCCCCCGCTACTTAAAGGTGGACTGCAGCTCCTTGAAGGCC +
Preference number: 5 (lower is better)
Translates to: RHPRPPHWGRSRAVG*SPRYLKVDCSSLKA
Trigger: GGCCTTCAAGGAGCTGCAGTCCACCTTTAAGTAGCGGGGGCTGCAGCCGACCGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS CCA 90 bp AGGATTCAGGCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTaGGGCCGGAGCAGGGCGGTCGGCTGCAGCCCCCGCTACTTAAAG +
Preference number: 5 (lower is better)
Translates to: RIQARPPMRHPRPPH*GRSRAVGCSPRYLK
Trigger: CTTTAAGTAGCGGGGGCTGCAGCCGACCGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGCCTGAATCCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CAA 90 bp GGCAGGGAGCCAGCGCCGGTGTGGCGGCCTCGTGCAGAGTGGAAGGGAGCGGGGAAGCTCTTGGCCCCCTaGACACCCTCACTGGAGACG +
Preference number: 5 (lower is better)
Translates to: GREPAPVWRPRAEWKGAGKLLAP*TPSLET
Trigger: CGTCTCCAGTGAGGGTGTCAAGGGGGCCAAGAGCTT...CCCCGCTCCCTTCCACTCTGCACGAGGCCGCCACACCGGCGCTGGCTCCCTGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CAA 90 bp CCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGGTCGGCTGCAGCCCCCGCTAAAGCGGCTGGACACGTaGATGGCCTGGACCTATATT +
Preference number: 5 (lower is better)
Translates to: PSPTTLGPEQGGRLQPPLKRLDT*MAWTYI
Trigger: AATATAGGTCCAGGCCATCAACGTGTCCAGCCGCTT...TAGCGGGGGCTGCAGCCGACCGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS GCA 90 bp CGGAGCAGGGCGGTCGGCTGCAGCCCCCGCTACTTAAAGGTGGACTaGAGCTCCTTGAAGGCCGCTTTCCGCTGCTTCATCTCCTCCGCC +
Preference number: 5 (lower is better)
Translates to: RSRAVGCSPRYLKVD*SSLKAAFRCFISSA
Trigger: GGCGGAGGAGATGAAGCAGCGGAAAGCGGCCTTCAAGGAGCTGCAGTCCACCTTTAAGTAGCGGGGGCTGCAGCCGACCGCCCTGCTCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS GCA 90 bp GGGCGCTCGAAGGGAGTCGCTCAAGCTGCTGCCATCCTGATCCTCTaGTTCCTGTCCGGGGAGCCCAGCGGCACACCCAGTTCCACTTGG +
Preference number: 5 (lower is better)
Translates to: GRSKGVAQAAAILIL*FLSGEPSGTPSSTW
Trigger: CCAAGTGGAACTGGGTGTGCCGCTGGGCTCCCCGGACAGGAAGCAGAGGATCAGGATGGCAGCAGCTTGAGCGACTCCCTTCGAGCGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS GCA 90 bp GGCTGCTGCAAAGCAAGGGCGCTCGAAGGGAGTCGCTCAAGCTGCTaGCATCCTGATCCTCTGCTTCCTGTCCGGGGAGCCCAGCGGCAC +
Preference number: 5 (lower is better)
Translates to: GCCKARALEGSRSSC*HPDPLLPVRGAQRH
Trigger: GTGCCGCTGGGCTCCCCGGACAGGAAGCAGAGGATCAGGATGGCAGCAGCTTGAGCGACTCCCTTCGAGCGCCCTTGCTTTGCAGCAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR CAA 90 bp GCCCACCGCCTGGCGCATGCAAACACACTTAAAGCACTTCTCGGAGGCTTCTCGAGCCGCCGGCTCAGCTaGGTGGCCAGCTCGTCCGTG +
Preference number: 5 (lower is better)
Translates to: AHRLAHANTLKALLGGFSSRRLS*VASSSV
Trigger: CACGGACGAGCTGGCCACCAAGCTGAGCCGGCGGCT...CGAGAAGCCTCCGAGAAGTGCTTTAAGTGTGTTTGCATGCGCCAGGCGGTGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp GAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCGCCCCACTCTCCCCGGCCGCCGCCTaGCGGAAGATCAGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: EALVSFPRKVPILPPAPLSPAAA*RKIRRN
Trigger: GTTCCTCCTGATCTTCCGCAAGGCGGCGGCCGGGGA...GAGTGGGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp CTCCAGAGCCCCGAGACCCTCAGGGTGTTCTGGCTGGGGGTGCTAAGCAGCGGTAAGCTCTTGGCCCCCTaGACACCCTCACTGGAGACG +
Preference number: 5 (lower is better)
Translates to: LQSPETLRVFWLGVLSSGKLLAP*TPSLET
Trigger: CGTCTCCAGTGAGGGTGTCAAGGGGGCCAAGAGCTT...ACCGCTGCTTAGCACCCCCAGCCAGAACACCCTGAGGGTCTCGGGGCTCTGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTCCTCCAATTAGCCCCTaGGGTCCCACTCTGTGGGGG +
Preference number: 5 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPPPISP*GPTLWG
Trigger: CCCCCACAGAGTGGGACCCAAGGGGCTAATTGGAGG...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS TCA 90 bp CAAAGCAAGGGCGCTCGAAGGGAGTCGCTCAAGCTGCTGCCATCCTaGTCCTCTGCTTCCTGTCCGGGGAGCCCAGCGGCACACCCAGTT +
Preference number: 5 (lower is better)
Translates to: QSKGARRESLKLLPS*SSASCPGSPAAHPV
Trigger: AACTGGGTGTGCCGCTGGGCTCCCCGGACAGGAAGCAGAGGATCAGGATGGCAGCAGCTTGAGCGACTCCCTTCGAGCGCCCTTGCTTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR CAA 90 bp ACACGCATGTCAGCAAGCACGTGGGAAGCTGTGGCAGAACCCGGCCGGTGGCCTTCCTCCTGCTCTGCCTaGATCTCCTCCTCGAAGCGG +
Preference number: 5 (lower is better)
Translates to: TRMSASTWEAVAEPGRWPSSCSA*ISSSKR
Trigger: CCGCTTCGAGGAGGAGATCAAGGCAGAGCAGGAGGA...AGGCCACCGGCCGGGTTCTGCCACAGCTTCCCACGTGCTTGCTGACATGCGTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp ACAGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTGGGGAAGGATGGCGGGTGGACTGCAGCTCCTaGAAGGCCGCTTTCCGCTGC +
Preference number: 5 (lower is better)
Translates to: TGRSLVTRQWTSLGEGWRVDCSS*KAAFRC
Trigger: GCAGCGGAAAGCGGCCTTCAAGGAGCTGCAGTCCAC...CCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp GCTCGGCCTCCCATGCGCCACCCTCGCCCACCACACTGGGGCCGGAGCAGGGCGATAAGACCCCTGAACTaGCTCCATTCACAGATATTT +
Preference number: 5 (lower is better)
Translates to: ARPPMRHPRPPHWGRSRAIRPLN*LHSQIF
Trigger: AAATATCTGTGAATGGAGCAAGTTCAGGGGTCTTAT...CGCCCTGCTCCGGCCCCAGTGTGGTGGGCGAGGGTGGCGCATGGGAGGCCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CAA 90 bp CCGAGGCTGCTGCGCTGGGCTCGGTGCCTCCTAATTTCTGCAGATTCTAAGGCCGGCAGTGGACGTCACTaGGGGAAGGATGGCGGGAGA +
Preference number: 5 (lower is better)
Translates to: PRLLRWARCLLISADSKAGSGRH*GKDGGR
Trigger: TCTCCCGCCATCCTTCCCCAAGTGACGTCCACTGCC...GGCCTTAGAATCTGCAGAAATTAGGAGGCACCGAGCCCAGCGCAGCAGCCTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp CTCCAGAGCCCCGAGACCCTCAGGGTGTTCTGGCTGGGGGTGCTAAGCAGCGGTTTGATGGCCTGGACCTaGGCCTCAAAGAAGCTCTTG +
Preference number: 5 (lower is better)
Translates to: LQSPETLRVFWLGVLSSGLMAWT*ASKKLL
Trigger: CAAGAGCTTCTTTGAGGCCAAGGTCCAGGCCATCAA...ACCGCTGCTTAGCACCCCCAGCCAGAACACCCTGAGGGTCTCGGGGCTCTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp TTCTCGGAGGCTTCTCGGAGAATCAAGGCGAAGCGCTCGTCTCCTTCCCTAGGAAAGCGGCTGGACACGTaGATGGCCTGGACCTTGGCC +
Preference number: 5 (lower is better)
Translates to: FSEASRRIKAKRSSPSLGKRLDT*MAWTLA
Trigger: GGCCAAGGTCCAGGCCATCAACGTGTCCAGCCGCTT...TCCTAGGGAAGGAGACGAGCGCTTCGCCTTGATTCTCCGAGAAGCCTCCGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp GAAGCGCTCGTCTCCTTCCCTAGGAAGGTGCCAATTCTTCCTCCCGCCCCACTCCCGGCATCATACTGCTaGAACATCTTCTCCATGTCC +
Preference number: 5 (lower is better)
Translates to: EALVSFPRKVPILPPAPLPASYC*NIFSMS
Trigger: GGACATGGAGAAGATGTTCAAGCAGTATGATGCCGG...GAGTGGGGCGGGAGGAAGAATTGGCACCTTCCTAGGGAAGGAGACGAGCGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp TTAGCCCCTTGGGTCCCACTCTGTGGGGGCAGCCCTGATTCTATCTCTTCTGCCTCGAGGGCCACTCACTaGTTTGGACTGAGTGATGGT +
Preference number: 5 (lower is better)
Translates to: LAPWVPLCGGSPDSISSASRATH*FGLSDG
Trigger: ACCATCACTCAGTCCAAACAAGTGAGTGGCCCTCGA...GGCAGAAGAGATAGAATCAGGGCTGCCCCCACAGAGTGGGACCCAAGGGGCTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACCGCGCGGCACTCGCCTaGGCCGGGCCCCTGCTCTCA +
Preference number: 5 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDRAALA*AGPLLS
Trigger: TGAGAGCAGGGGCCCGGCCAAGGCGAGTGCCGCGCG...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp GAGGGGCCGGGCCACCTCCATAAGACCCCTGAACTTGCTCCATTCACAGATATTCACACCCAGTTCCACTaGGCCTCAAAGAAGCTCTTG +
Preference number: 5 (lower is better)
Translates to: EGPGHLHKTPELAPFTDIHTQFH*ASKKLL
Trigger: CAAGAGCTTCTTTGAGGCCAAGTGGAACTGGGTGTG...AATATCTGTGAATGGAGCAAGTTCAGGGGTCTTATGGAGGTGGCCCGGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS-3UTR CAA 90 bp TTTATATTCATCTGTATAAACATATCCGCTAAGGCAAACGCAATCCGGGTCCGATCGCCGATGCCCTGGTaGAGGTCTGCGCGCCGCAGC +
Preference number: 5 (lower is better)
Translates to: FIFICINISAKANAIRVRSPMPW*RSARRS
Trigger: GCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGA...TCGGACCCGGATTGCGTTTGCCTTAGCGGATATGTTTATACAGATGAATATAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp ACAGGCAGGTCGCTGGTGACAAGGCAGTGGACGTCACTTGGGGAAGGATGGCGGATAAGACCCCTGAACTaGCTCCATTCACAGATATTT +
Preference number: 5 (lower is better)
Translates to: TGRSLVTRQWTSLGEGWRIRPLN*LHSQIF
Trigger: AAATATCTGTGAATGGAGCAAGTTCAGGGGTCTTAT...CCGCCATCCTTCCCCAAGTGACGTCCACTGCCTTGTCACCAGCGACCTGCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACGTGGACTGCAGCTCCTaGAAGGCCGCTTTCCGCTGC +
Preference number: 5 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDVDCSS*KAAFRC
Trigger: GCAGCGGAAAGCGGCCTTCAAGGAGCTGCAGTCCAC...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS-3UTR CAA 90 bp GTTATGACACACACTGAAAGTTGCATAACTGTGGCCTCGAGGGCCACTCACTTGATCTTCTCCATGTCCTaGATCTGCTTCCTGGAGAAC +
Preference number: 5 (lower is better)
Translates to: VMTHTESCITVASRATHLIFSMS*ICFLEN
Trigger: GTTCTCCAGGAAGCAGATCAAGGACATGGAGAAGAT...CAAGTGAGTGGCCCTCGAGGCCACAGTTATGCAACTTTCAGTGTGTGTCATAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS-3UTR CAA 90 bp GAACTTGCTCCATTCACAGATATTTTTAGGTTTTTAGTAGTGGTCCCGTCAGACTCCTCCTGCTCTGCCTaGATCTCCTCCTCGAAGCGG +
Preference number: 5 (lower is better)
Translates to: ELAPFTDIFRFLVVVPSDSSCSA*ISSSKR
Trigger: CCGCTTCGAGGAGGAGATCAAGGCAGAGCAGGAGGA...GTCTGACGGGACCACTACTAAAAACCTAAAAATATCTGTGAATGGAGCAAGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS CAA 90 bp GTGGCCAGCTCGTCCGTGGCCATGGTGGCCCGCGCGGCACTCGCCTaGGCCGGGCCCCTGCTCTCAGCGCAGCGCCGCCGGCCGCGCTCT +
Preference number: 6 (lower is better)
Translates to: VASSSVAMVARAALA*AGPLLSAQRRRPRS
Trigger: AGAGCGCGGCCGGCGGCGCTGCGCTGAGAGCAGGGGCCCGGCCAAGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCAC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 72 bp GCCGGCTCAGCTTGGTGGCCAGCTCGTCCGTGGCCATaGTGGCCCGCGCGGCACTCGCCTTGGCCGGGCCCC +
Preference number: 6 (lower is better)
Translates to: AGSAWWPARPWP*WPARHSPWPGP
Trigger: GGGGCCCGGCCAAGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCACCAAGCTGAGCCGGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CAA 90 bp TGGGGCTCGCCGATGCCCTGGTTGAGGTCTGCGCGCCGCAGCAGCTaGGCGCTCAGCTCGCAGTCCGCGCTGCCCAGCGCCTCGGCCGCC +
Preference number: 6 (lower is better)
Translates to: WGSPMPWLRSARRSS*ALSSQSALPSASAA
Trigger: GGCGGCCGAGGCGCTGGGCAGCGCGGACTGCGAGCTGAGCGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCCCCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 72 bp GGCTCAGCTTGGTGGCCAGCTCGTCCGTGGCCATGGTaGCCCGCGCGGCACTCGCCTTGGCCGGGCCCCTGC +
Preference number: 6 (lower is better)
Translates to: GSAWWPARPWPW*PARHSPWPGPC
Trigger: GCAGGGGCCCGGCCAAGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCACCAAGCTGAGCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 72 bp GCAGCCGCCGGCTCAGCTTGGTGGCCAGCTCGTCCGTaGCCATGGTGGCCCGCGCGGCACTCGCCTTGGCCG +
Preference number: 6 (lower is better)
Translates to: AAAGSAWWPARP*PWWPARHSPWP
Trigger: CGGCCAAGGCGAGTGCCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCACCAAGCTGAGCCGGCGGCTGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS GCA 72 bp TGCTCCGGGGTCTCGCCGCCGCCCTCGCCCTCCATCTaGAGCCGCCGGCTCAGCTTGGTGGCCAGCTCGTCC +
Preference number: 6 (lower is better)
Translates to: CSGVSPPPSPSI*SRRLSLVASSS
Trigger: GGACGAGCTGGCCACCAAGCTGAGCCGGCGGCTGCAGATGGAGGGCGAGGGCGGCGGCGAGACCCCGGAGCA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 72 bp CCTCGCCCTCCATCTGCAGCCGCCGGCTCAGCTTGGTaGCCAGCTCGTCCGTGGCCATGGTGGCCCGCGCGG +
Preference number: 6 (lower is better)
Translates to: PRPPSAAAGSAW*PARPWPWWPAR
Trigger: CCGCGCGGGCCACCATGGCCACGGACGAGCTGGCCACCAAGCTGAGCCGGCGGCTGCAGATGGAGGGCGAGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CCA 72 bp ACGCGGCGGCTGGGCGACTGGGGCTCGCCGATGCCCTaGTTGAGGTCTGCGCGCCGCAGCAGCTTGGCGCTC +
Preference number: 6 (lower is better)
Translates to: TRRLGDWGSPMP*LRSARRSSLAL
Trigger: GAGCGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCCCAGCCGCCGCGT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CAA 72 bp CGGCGGCTGGGCGACTGGGGCTCGCCGATGCCCTGGTaGAGGTCTGCGCGCCGCAGCAGCTTGGCGCTCAGC +
Preference number: 6 (lower is better)
Translates to: RRLGDWGSPMPW*RSARRSSLALS
Trigger: GCTGAGCGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCCCAGCCGCCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CAA 90 bp TTGAAGACGCGGCGGCTGGGCGACTGGGGCTCGCCGATGCCCTGGTaGAGGTCTGCGCGCCGCAGCAGCTTGGCGCTCAGCTCGCAGTCC +
Preference number: 6 (lower is better)
Translates to: LKTRRLGDWGSPMPW*RSARRSSLALSSQS
Trigger: GGACTGCGAGCTGAGCGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCCCAGCCGCCGCGTCTTCAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS GCA 72 bp CGCCCACCACACTGGGGCCGGAGCAGGGCGGTCGGCTaGAGCCCCCGCTACTTAAAGGTGGACTGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: RPPHWGRSRAVG*SPRYLKVDCSS
Trigger: GGAGCTGCAGTCCACCTTTAAGTAGCGGGGGCTGCAGCCGACCGCCCTGCTCCGGCCCCAGTGTGGTGGGCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS TCA 72 bp GGCGCTCGAAGGGAGTCGCTCAAGCTGCTGCCATCCTaGTCCTCTGCTTCCTGTCCGGGGAGCCCAGCGGCA +
Preference number: 6 (lower is better)
Translates to: GARRESLKLLPS*SSASCPGSPAA
Trigger: TGCCGCTGGGCTCCCCGGACAGGAAGCAGAGGATCAGGATGGCAGCAGCTTGAGCGACTCCCTTCGAGCGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS GCA 72 bp AAGGGAGTCGCTCAAGCTGCTGCCATCCTGATCCTCTaGTTCCTGTCCGGGGAGCCCAGCGGCACACCCAGT +
Preference number: 6 (lower is better)
Translates to: KGVAQAAAILIL*FLSGEPSGTPS
Trigger: ACTGGGTGTGCCGCTGGGCTCCCCGGACAGGAAGCAGAGGATCAGGATGGCAGCAGCTTGAGCGACTCCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS CAA 90 bp GCGGTCGGCTGCAGCCCCCGCTACTTAAAGGTGGACTGCAGCTCCTaGAAGGCCGCTTTCCGCTGCTTCATCTCCTCCGCCTGCTTCTTC +
Preference number: 6 (lower is better)
Translates to: AVGCSPRYLKVDCSS*KAAFRCFISSACFF
Trigger: GAAGAAGCAGGCGGAGGAGATGAAGCAGCGGAAAGCGGCCTTCAAGGAGCTGCAGTCCACCTTTAAGTAGCGGGGGCTGCAGCCGACCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS GCA 72 bp AAAGCAAGGGCGCTCGAAGGGAGTCGCTCAAGCTGCTaGCATCCTGATCCTCTGCTTCCTGTCCGGGGAGCC +
Preference number: 6 (lower is better)
Translates to: KARALEGSRSSC*HPDPLLPVRGA
Trigger: GGCTCCCCGGACAGGAAGCAGAGGATCAGGATGGCAGCAGCTTGAGCGACTCCCTTCGAGCGCCCTTGCTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS CAA 72 bp TGCAGCCCCCGCTACTTAAAGGTGGACTGCAGCTCCTaGAAGGCCGCTTTCCGCTGCTTCATCTCCTCCGCC +
Preference number: 6 (lower is better)
Translates to: CSPRYLKVDCSS*KAAFRCFISSA
Trigger: GGCGGAGGAGATGAAGCAGCGGAAAGCGGCCTTCAAGGAGCTGCAGTCCACCTTTAAGTAGCGGGGGCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375980.9
ENST00000445566.1
CDS CAA 72 bp TCTGCCTTGATCTCCTCCTCGAAGCGGCTGGACACGTaGATGGCCTGGACCTTGGCCTCAAAGAAGCTCTTG +
Preference number: 6 (lower is better)
Translates to: SALISSSKRLDT*MAWTLASKKLL
Trigger: CAAGAGCTTCTTTGAGGCCAAGGTCCAGGCCATCAACGTGTCCAGCCGCTTCGAGGAGGAGATCAAGGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9
CDS CAA 72 bp TCTGCCTTGATCTCCTCCTCGAAGCGGCTGGACACGTaGATGGCCTGGACCTATATTCTGTGGCTGCTGCAA +
Preference number: 6 (lower is better)
Translates to: SALISSSKRLDT*MAWTYILWLLQ
Trigger: TTGCAGCAGCCACAGAATATAGGTCCAGGCCATCAACGTGTCCAGCCGCTTCGAGGAGGAGATCAAGGCAGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000445566.1
CDS CAA 72 bp CCGGCATCATACTGCTTGAACATCTTCTCCATGTCCTaGATCTGCTTCCTGGAGAACTCCTTGAACTCGGTG +
Preference number: 6 (lower is better)
Translates to: PASYCLNIFSMS*ICFLENSLNSV
Trigger: CACCGAGTTCAAGGAGTTCTCCAGGAAGCAGATCAAGGACATGGAGAAGATGTTCAAGCAGTATGATGCCGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000375980.9