Pregenerated sensors for EFCAB13-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000263293Ensembl transcript IDs: ENST00000575039.1, ENST00000576345.2
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | TGTAGGGATAGGTTTGAGGCACTAAGGCAAGGCTGCCCTGAACACTaGAAGTACAGTGCCTTCTGGGAGCAGGAGGAATCCATCCCATCA | + |
Preference number: 5 (lower is better) Translates to: CRDRFEALRQGCPEH*KYSAFWEQEESIPS Trigger: TGATGGGATGGATTCCTCCTGCTCCCAGAAGGCACTGTACTTTCAGTGTTCAGGGCAGCCTTGCCTTAGTGCCTCAAACCTATCCCTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000575039.1 ENST00000576345.2 |
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CDS GCA 90 bp | ACAGACCAGCCACAGGTTTGTCACCAACCAATGCTGTCGATCGCTTaGTTCCCTTTAACACCTTCATGGCCTTTGTTCTCCCCTTCTAAG | + |
Preference number: 5 (lower is better) Translates to: TDQPQVCHQPMLSIA*FPLTPSWPLFSPSK Trigger: CTTAGAAGGGGAGAACAAAGGCCATGAAGGTGTTAAAGGGAAGCAAGCGATCGACAGCATTGGTTGGTGACAAACCTGTGGCTGGTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000575039.1 |
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CDS TCA 72 bp | AGGTTTGAGGCACTAAGGCAAGGCTGCCCTGAACACTaGAAGTACAGTGCCTTCTGGGAGCAGGAGGAATCC | + |
Preference number: 6 (lower is better) Translates to: RFEALRQGCPEH*KYSAFWEQEES Trigger: GGATTCCTCCTGCTCCCAGAAGGCACTGTACTTTCAGTGTTCAGGGCAGCCTTGCCTTAGTGCCTCAAACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000575039.1 ENST00000576345.2 |
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CDS CAA 90 bp | GGAGCAGGAGGAATCCATCCCATCATACACAGACCAGCCACAGGTTaGTCACCAACCAATGCTGTCGATCGCTTGCTTCCCTTTAACACC | + |
Preference number: 6 (lower is better) Translates to: GAGGIHPIIHRPATG*SPTNAVDRLLPFNT Trigger: GGTGTTAAAGGGAAGCAAGCGATCGACAGCATTGGTTGGTGACAAACCTGTGGCTGGTCTGTGTATGATGGGATGGATTCCTCCTGCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000575039.1 ENST00000576345.2 |
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CDS GCA 72 bp | CCACAGGTTTGTCACCAACCAATGCTGTCGATCGCTTaGTTCCCTTTAACACCTTCATGGCCTTTGTTCTCC | + |
Preference number: 6 (lower is better) Translates to: PQVCHQPMLSIA*FPLTPSWPLFS Trigger: GGAGAACAAAGGCCATGAAGGTGTTAAAGGGAAGCAAGCGATCGACAGCATTGGTTGGTGACAAACCTGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000575039.1 ENST00000576345.2 |
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CDS CAA 72 bp | GCCACAGGTTTGTCACCAACCAATGCTGTCGATCGCTaGCTTCCCTTTAACACCTTCATGGCCTTTGTTCTC | + |
Preference number: 6 (lower is better) Translates to: ATGLSPTNAVDR*LPFNTFMAFVL Trigger: GAGAACAAAGGCCATGAAGGTGTTAAAGGGAAGCAAGCGATCGACAGCATTGGTTGGTGACAAACCTGTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000575039.1 ENST00000576345.2 |
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CDS CAA 72 bp | TCGATCGCTTGCTTCCCTTTAACACCTTCATGGCCTTaGTTCTCCCCTTCTAAGGCCCCAAAGTCTTATCCC | + |
Preference number: 6 (lower is better) Translates to: SIACFPLTPSWP*FSPSKAPKSYP Trigger: GGGATAAGACTTTGGGGCCTTAGAAGGGGAGAACAAAGGCCATGAAGGTGTTAAAGGGAAGCAAGCGATCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000575039.1 |
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CDS CAA 90 bp | CACAGACCAGCCACAGGTTTGTCACCAACCAATGCTGTCGATCGCTaGCTTCCCTTTAACACCTTCATGGCCTTTGTTCTCCTGACATTT | + |
Preference number: 6 (lower is better) Translates to: HRPATGLSPTNAVDR*LPFNTFMAFVLLTF Trigger: AAATGTCAGGAGAACAAAGGCCATGAAGGTGTTAAAGGGAAGCAAGCGATCGACAGCATTGGTTGGTGACAAACCTGTGGCTGGTCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000576345.2 |
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CDS TCA 72 bp | CTTAAATACAGCTACTCAAGTACATGCTTTTCAATCTaGAGTTCGAAGGTAAGATTGAAGTGGGGTCAGACC | + |
Preference number: 6 (lower is better) Translates to: LKYSYSSTCFSI*SSKVRLKWGQT Trigger: GGTCTGACCCCACTTCAATCTTACCTTCGAACTTCAGATTGAAAAGCATGTACTTGAGTAGCTGTATTTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000575039.1 |