RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EAF1 (Homo sapiens)

Ensembl gene IDs: ENSG00000144597

Ensembl transcript IDs: ENST00000396842.7, ENST00000449565.1, ENST00000617675.1

Found 326 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTTCCATTGGCAACGGCAGGCCTACTGTTGTAGGGCTGCTGGTGTaGAGGCTGCGGAGGAGAGGCTGGGCCATTGTCCTCGCCTCCACT +
Preference number: 1 (lower is better)
Translates to: GSIGNGRPTVVGLLV*RLRRRGWAIVLAST
Trigger: AGTGGAGGCGAGGACAATGGCCCAGCCTCTCCTCCGCAGCCTTCACACCAGCAGCCCTACAACAGTAGGCCTGCCGTTGCCAATGGAACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR GCA 90 bp GTGAAGGCTGCGGAGGAGAGGCTGGGCCATTGTCCTCGCCTCCACTaGTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGAGTCTG +
Preference number: 1 (lower is better)
Translates to: VKAAEERLGHCPRLH*WSYRHHFPKSSQSL
Trigger: CAGACTCTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACAATGGCCCAGCCTCTCCTCCGCAGCCTTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR CCA 90 bp CTGCAAGTCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTaGCCGGCTGGTTCCATTGGCAACGGCAGGCCTACTGTTGTAGGG +
Preference number: 1 (lower is better)
Translates to: LQVISEGVHELVASL*PAGSIGNGRPTVVG
Trigger: CCCTACAACAGTAGGCCTGCCGTTGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGACTTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR GCA 90 bp TATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATaGATCAGCACAGTGGCTACCGGTTTCATCTGCTCACCCAGCCTC +
Preference number: 1 (lower is better)
Translates to: YGSTWNQNPQLNGVT*ISTVATGFICSPSL
Trigger: GAGGCTGGGTGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp ACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGAGTCTaGAGAGCTGCTCCCACTGCTGCTGCTCATTTGTTCAATAATGTC +
Preference number: 1 (lower is better)
Translates to: TAGAIVITSRRALRV*RAAPTAAAHLFNNV
Trigger: GACATTATTGAACAAATGAGCAGCAGCAGTGGGAGCAGCTCTTCAGACTCTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR GCA 90 bp AGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCAAGCCAGTaGCACGTGCAAGCATTTCCTATAGAAACACGTCTTGACCCAACA +
Preference number: 1 (lower is better)
Translates to: RTNGLKLRKLDSPSQ*HVQAFPIETRLDPT
Trigger: TGTTGGGTCAAGACGTGTTTCTATAGGAAATGCTTGCACGTGGCACTGGCTTGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp CCATGGTCCTCACCAACTGACACTCAAGGACTCCATTCTGTATTCTaGGGTCCATTTCTATCCAGGCTTGTCAGGCTGAGTCAGACAAAA +
Preference number: 1 (lower is better)
Translates to: PWSSPTDTQGLHSVF*GPFLSRLVRLSQTK
Trigger: TTTTGTCTGACTCAGCCTGACAAGCCTGGATAGAAATGGACCTCAGAATACAGAATGGAGTCCTTGAGTGTCAGTTGGTGAGGACCATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR GCA 90 bp CTGAATGGAGTCACATGCATCAGCACAGTGGCTACCGGTTTCATCTaGTCACCCAGCCTCATGTATTTAGGGACTGAATTCAAGCTAGAA +
Preference number: 1 (lower is better)
Translates to: LNGVTCISTVATGFI*SPSLMYLGTEFKLE
Trigger: TTCTAGCTTGAATTCAGTCCCTAAATACATGAGGCTGGGTGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTGACTCCATTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp ACTTCATTCCACTGGTACCAACCACTTGGCCAAACTGATGGCTGCTaGGGTTTAAAACTGAATCTCTGGCCTGGTGAAGATATGGCCTTT +
Preference number: 1 (lower is better)
Translates to: TSFHWYQPLGQTDGC*GLKLNLWPGEDMAF
Trigger: AAAGGCCATATCTTCACCAGGCCAGAGATTCAGTTTTAAACCTCAGCAGCCATCAGTTTGGCCAAGTGGTTGGTACCAGTGGAATGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp GAGGCAGGAAGAACAAGTCCGGTTTGGCTGGCAGGAGGGCATCTGTaGGAAGCCATCTGTGAAGCCAAATTCTTGATTTCTAAAAAGAAA +
Preference number: 1 (lower is better)
Translates to: EAGRTSPVWLAGGHL*EAICEAKFLISKKK
Trigger: TTTCTTTTTAGAAATCAAGAATTTGGCTTCACAGATGGCTTCTCACAGATGCCCTCCTGCCAGCCAAACCGGACTTGTTCTTCCTGCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR GCA 90 bp ACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTaGGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCCAGC +
Preference number: 1 (lower is better)
Translates to: TFSSCNGLHAKVAQS*GMFVHQKVGFERSS
Trigger: GCTGGATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR CCA 90 bp GAATACTTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATaGAGTCACATGCATCAGCACAGTGGCTACCGGTTTCATCTGCTC +
Preference number: 1 (lower is better)
Translates to: EYLVWIHMEPKSPTE*SHMHQHSGYRFHLL
Trigger: GAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAAGTATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 90 bp AAACTCCTACTACAGTCACTGATCCATAACATTTTCCTCTTGCAATaGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCA +
Preference number: 1 (lower is better)
Translates to: KLLLQSLIHNIFLLQ*TPRQSSSVLRHVCA
Trigger: TGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGATCAGTGACTGTAGTAGGAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR TCA 90 bp ACCAAGCCAGTGCCACGTGCAAGCATTTCCTATAGAAACACGTCTTaGCCCAACATGCCAAAAACCATAGTTCTGTCTACAGAAATCAAG +
Preference number: 1 (lower is better)
Translates to: TKPVPRASISYRNTS*PNMPKTIVLSTEIK
Trigger: CTTGATTTCTGTAGACAGAACTATGGTTTTTGGCATGTTGGGTCAAGACGTGTTTCTATAGGAAATGCTTGCACGTGGCACTGGCTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 90 bp AATCATGAAAGTCAGCATGGATACTTTCAGCTGTCTCCAAATGCCTaGAATGTTTTCCTATGTCTATCCTCTGCACTTCACTGGCTGGGT +
Preference number: 1 (lower is better)
Translates to: NHESQHGYFQLSPNA*NVFLCLSSALHWLG
Trigger: ACCCAGCCAGTGAAGTGCAGAGGATAGACATAGGAAAACATTCCAGGCATTTGGAGACAGCTGAAAGTATCCATGCTGACTTTCATGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp CAGTGGCTCTCTGGGCTCACTATGATGATGAAACAGTTGACTCTATaGAGTTTAACTCTAATGAAAGCCCCTATGACAGACCACCTATTT +
Preference number: 1 (lower is better)
Translates to: QWLSGLTMMMKQLTL*SLTLMKAPMTDHLF
Trigger: AAATAGGTGGTCTGTCATAGGGGCTTTCATTAGAGTTAAACTTCATAGAGTCAACTGTTTCATCATCATAGTGAGCCCAGAGAGCCACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp CCAAGTGCCAATGTACATCTAAAAGTCCCATGTATAGGAATCTCTTaGTTCCTACAAATGAGATTCAAGGGAGAGAACAGTGAGGAAAGC +
Preference number: 1 (lower is better)
Translates to: PSANVHLKVPCIGIS*FLQMRFKGENSEES
Trigger: GCTTTCCTCACTGTTCTCTCCCTTGAATCTCATTTGTAGGAATCAAGAGATTCCTATACATGGGACTTTTAGATGTACATTGGCACTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp CTAACTCTTCAATTGGTCTTGTCTTCCAACCTATTGGTTAAGGCCTaGGTTTCAGAAATCCTACCTTCCTTGCCAAATAGAAACATCCAC +
Preference number: 1 (lower is better)
Translates to: LTLQLVLSSNLLVKA*VSEILPSLPNRNIH
Trigger: GTGGATGTTTCTATTTGGCAAGGAAGGTAGGATTTCTGAAACTCAGGCCTTAACCAATAGGTTGGAAGACAAGACCAATTGAAGAGTTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp TCCATTCTGTATTCTGAGGTCCATTTCTATCCAGGCTTGTCAGGCTaGGTCAGACAAAACTTCCTTACCACTTTGTGTCAACAATTTAAA +
Preference number: 1 (lower is better)
Translates to: SILYSEVHFYPGLSG*VRQNFLTTLCQQFK
Trigger: TTTAAATTGTTGACACAAAGTGGTAAGGAAGTTTTGTCTGACTCAGCCTGACAAGCCTGGATAGAAATGGACCTCAGAATACAGAATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp AGGGACCTGTGGAGGAAAAATTATTATTACTACCTTGATGTCCGCTaGACCAAAGTGGATGGAAATTTCTCAGGACATATTCATCCAAAC +
Preference number: 1 (lower is better)
Translates to: RDLWRKNYYYYLDVR*TKVDGNFSGHIHPN
Trigger: GTTTGGATGAATATGTCCTGAGAAATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTAGTAATAATAATTTTTCCTCCACAGGTCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR GCA 90 bp CCAACCTATTGGTTAAGGCCTGAGTTTCAGAAATCCTACCTTCCTTaGCAAATAGAAACATCCACTTTGGCTGTATATAACATTATCCAC +
Preference number: 1 (lower is better)
Translates to: PTYWLRPEFQKSYLP*QIETSTLAVYNIIH
Trigger: GTGGATAATGTTATATACAGCCAAAGTGGATGTTTCTATTTGGCAAGGAAGGTAGGATTTCTGAAACTCAGGCCTTAACCAATAGGTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 90 bp ACAAATCGGTCAGGGAGTCAGGTACAAAACAGTGGTACAAAAGCATaGATAGATACGCCTTATCAAAGAATGTGCTCATTTCATATTGCA +
Preference number: 1 (lower is better)
Translates to: TNRSGSQVQNSGTKA*IDTPYQRMCSFHIA
Trigger: TGCAATATGAAATGAGCACATTCTTTGATAAGGCGTATCTATTCATGCTTTTGTACCACTGTTTTGTACCTGACTCCCTGACCGATTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 90 bp GGAGGAAAAATTATTATTACTACCTTGATGTCCGCTGAACCAAAGTaGATGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACA +
Preference number: 1 (lower is better)
Translates to: GGKIIITTLMSAEPK*MEISQDIFIQTTKT
Trigger: TGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTAGTAATAATAATTTTTCCTCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR GCA 90 bp CTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTGGTTCCATTGGCAGGAGGACGAGTGGGCTaGTGTTCCATTCGGGCCTGG +
Preference number: 2 (lower is better)
Translates to: LRVFMSWLLPCGRLVPLAGGRVG*CSIRAW
Trigger: CCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCC...TGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CCA 90 bp TGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAACTGCGGAGGAGAGGCTaGGCCATTGTCCTCGCCTCC +
Preference number: 2 (lower is better)
Translates to: CNGLHAKVAQSCGMFVHQLRRRG*AIVLAS
Trigger: GGAGGCGAGGACAATGGCCCAGCCTCTCCTCCGCAG...TTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR TCA 90 bp TGCGGAGGAGAGGCTGGGCCATTGTCCTCGCCTCCACTGCTGGAGCTATCGTCACCCTCAGCTCTCTTTTaGTGTCATCCAACTGAGGTT +
Preference number: 2 (lower is better)
Translates to: CGGEAGPLSSPPLLELSSPSALF*CHPTEV
Trigger: AACCTCAGTTGGATGACATCAAAAGAGAGCTGAGGG...TGACGATAGCTCCAGCAGTGGAGGCGAGGACAATGGCCCAGCCTCTCCTCCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR TCA 90 bp TCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTGGTTCCAAGAGCTCTCAGAGTCTaGAGAGCTGCTCCCACTGCT +
Preference number: 2 (lower is better)
Translates to: SFLRVFMSWLLPCGRLVPRALRV*RAAPTA
Trigger: AGCAGTGGGAGCAGCTCTTCAGACTCTGAGAGCTCT...TGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CCA 90 bp CACATGCATCAGCACAGTGGCTACCGGTTTCATCTGCTCACCCAGCCTCATGTAGCTGGCAGGACTCCATaGTCCTCACCAACTGACACT +
Preference number: 2 (lower is better)
Translates to: HMHQHSGYRFHLLTQPHVAGRTP*SSPTDT
Trigger: AGTGTCAGTTGGTGAGGACCATGGAGTCCTGCCAGC...TACATGAGGCTGGGTGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 90 bp CAACTGCAAGTCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTaGTGGCCGGCTGGTTCCATTGGCAACGGCAGGCCTACTGTTGTA +
Preference number: 2 (lower is better)
Translates to: QLQVISEGVHELVAS*WPAGSIGNGRPTVV
Trigger: TACAACAGTAGGCCTGCCGTTGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGACTTGCAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR TCA 90 bp CAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGGTAGGGCTGCTGGTGTaGAGGCTGCGGAGGAGAGGC +
Preference number: 2 (lower is better)
Translates to: QSSSVLRHVCAPKSRFRKVGLLV*RLRRRG
Trigger: GCCTCTCCTCCGCAGCCTTCACACCAGCAGCCCTAC...CTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR GCA 90 bp GAGTCACCACAGCCAGCCCAGTACCTGCTTTTAAGGAGCTCATACCGACCAGAGTTTCTAAGTCCAGACTaGTTCCCCTCCACTAGCTGG +
Preference number: 2 (lower is better)
Translates to: ESPQPAQYLLLRSSYRPEFLSPD*FPSTSW
Trigger: CCAGCTAGTGGAGGGGAAGCAGTCTGGACTTAGAAA...CTCTGGTCGGTATGAGCTCCTTAAAAGCAGGTACTGGGCTGGCTGTGGTGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCAAATGACAGGTTGAGCTaGCAGGACTCCATGGTCCTC +
Preference number: 2 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPNDRLS*QDSMVL
Trigger: GAGGACCATGGAGTCCTGCCAGCTCAACCTGTCATT...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCAGAGAGGCCATATGAGTaGAGGGACCTGTGGAGGAAA +
Preference number: 2 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPERPYE*RDLWRK
Trigger: TTTCCTCCACAGGTCCCTCCACTCATATGGCCTCTC...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp TCAGGTGAGGGGTTATCTTTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCTCTGTGGAGGACGAGTaGGCTGCTGTTCCATTCGGG +
Preference number: 2 (lower is better)
Translates to: SGEGLSFKGEVLGPTGGFSVEDE*AAVPFG
Trigger: CCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGA...GAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCCTCACCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR TCA 90 bp GAGTCACCACAGCCAGCCCAGTACCTGCTTTTAAGGAGCTCATACCGACCAGAGACCACTTGGCCAAACTaGTGGCTGCTGAGGTTTAAA +
Preference number: 2 (lower is better)
Translates to: ESPQPAQYLLLRSSYRPETTWPN*WLLRFK
Trigger: TTTAAACCTCAGCAGCCATCAGTTTGGCCAAGTGGT...CTCTGGTCGGTATGAGCTCCTTAAAAGCAGGTACTGGGCTGGCTGTGGTGACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp TTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCCTAGCGATGGTCCTCACCAACTaGCACTCAAGGACTCCATTC +
Preference number: 2 (lower is better)
Translates to: LNPPKSHDGLRAQHGVLAMVLTN*HSRTPF
Trigger: GAATGGAGTCCTTGAGTGTCAGTTGGTGAGGACCAT...CGCTAGGACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR GCA 90 bp TTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTCAGAGTCTGAAGAGCTaGTCCCACTGCTGCTGCTCA +
Preference number: 2 (lower is better)
Translates to: FLLQWTPRQSSSVLRHVCQSLKS*SHCCCS
Trigger: TGAGCAGCAGCAGTGGGAGCAGCTCTTCAGACTCTG...ACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CCA 90 bp TGTCCTCGCCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGATTTTCCTCTTGCAATaGACTCCACGCCAAAGTAGC +
Preference number: 2 (lower is better)
Translates to: CPRLHCWSYRHHFPKSSQIFLLQ*TPRQSS
Trigger: GCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAAT...CTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CCA 90 bp GAGTCACCACAGCCAGCCCAGTACCTGCTTTTAAGGAGCTCATACCGACCAGAGACAGAACCTCAAAAGTaGGGTATGGAGGGAGAGAAG +
Preference number: 2 (lower is better)
Translates to: ESPQPAQYLLLRSSYRPETEPQK*GMEGEK
Trigger: CTTCTCTCCCTCCATACCCCACTTTTGAGGTTCTGT...CTCTGGTCGGTATGAGCTCCTTAAAAGCAGGTACTGGGCTGGCTGTGGTGACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp CTGCAAGTCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTAACTGGAGGCTTCGTTaGAGCTCTGAATGGCATAGG +
Preference number: 2 (lower is better)
Translates to: LQVISEGVHELVASLWPANWRLR*SSEWHR
Trigger: CCTATGCCATTCAGAGCTCCAACGAAGCCTCCAGTT...AGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGACTTGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR TCA 90 bp CTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTGGTTCCATTGGCAAAAGACTTGAATATGTaGGAGTTCCAGAGCCTCAAA +
Preference number: 2 (lower is better)
Translates to: LRVFMSWLLPCGRLVPLAKDLNM*EFQSLK
Trigger: TTTGAGGCTCTGGAACTCTCACATATTCAAGTCTTT...TGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR TCA 90 bp TTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCCTAGCGCTCCATTCTGTATTCTaGGGTCCATTTCTATCCAGG +
Preference number: 2 (lower is better)
Translates to: LNPPKSHDGLRAQHGVLALHSVF*GPFLSR
Trigger: CCTGGATAGAAATGGACCTCAGAATACAGAATGGAG...CGCTAGGACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATAGGTGGTGGTGGCTGTaGCGTCTGTGGAGGACGAGT +
Preference number: 2 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDRWWWL*RLWRTS
Trigger: ACTCGTCCTCCACAGACGTCACAGCCACCACCACCT...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR TCA 90 bp GAGCTGCTCCCACTGCTGCTGCTCATTTGTTCAATAATGTCAACTTCAGCCCTCCAACTGAGGTTCAGGTaGGGGGTTATCTTTCAAGGG +
Preference number: 2 (lower is better)
Translates to: ELLPLLLLICSIMSTSALQLRFR*GVIFQG
Trigger: CCCTTGAAAGATAACCCCTCACCTGAACCTCAGTTG...GAGGGCTGAAGTTGACATTATTGAACAAATGAGCAGCAGCAGTGGGAGCAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CCA 90 bp CTGCCATTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCGGCCTGGTGAAGATATaGCCTTTGAGTAACTTAGAC +
Preference number: 2 (lower is better)
Translates to: LPLNPPKSHDGLRAQHGVGLVKI*PLSNLD
Trigger: GTCTAAGTTACTCAAAGGCCATATCTTCACCAGGCC...GACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAATGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCAAAATCCCCAACTGAATaGAGTCACATGCATCAGCAC +
Preference number: 2 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPKSPTE*SHMHQH
Trigger: GTGCTGATGCATGTGACTCCATTCAGTTGGGGATTT...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp GCTGCTCCCACTGCTGCTGCTCATTTGTTCAATAATGTCAACTTCAGCCCTCAGAGTTTTGGGTCCAACTaGAGGCTTCGTTGGAGCTCT +
Preference number: 2 (lower is better)
Translates to: AAPTAAAHLFNNVNFSPQSFGSN*RLRWSS
Trigger: AGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACT...CTGAGGGCTGAAGTTGACATTATTGAACAAATGAGCAGCAGCAGTGGGAGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR TCA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCACATGTATTTAGGGACTaGATTCAAGCTAGAAGCACC +
Preference number: 2 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPHVFRD*IQARST
Trigger: GGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATG...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR GCA 90 bp TTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTTGGAGCTCTGAATGGCAAAGTAGCTCAGTCTTaGGGCATGTTTGTGCACCAA +
Preference number: 2 (lower is better)
Translates to: FKGEVLGPTGGFVGALNGKVAQS*GMFVHQ
Trigger: TTGGTGCACAAACATGCCGCAAGACTGAGCTACTTT...GCCATTCAGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CCA 90 bp TGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCCAGCACTAGTCATTCTGAATGGCATAGGTaGTGGAGGTGGTGGTGGCTG +
Preference number: 2 (lower is better)
Translates to: CGMFVHQKVGFERSSTSHSEWHR*WRWWWL
Trigger: CAGCCACCACCACCTCCACCACCTATGCCATTCAGA...ATGACTAGTGCTGGATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CCA 90 bp AACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATTCAAGGGAGAAGTTTTaGGTCCAACTGGAGGCTTCG +
Preference number: 2 (lower is better)
Translates to: NIFLLQWTPRQSSSVLRHSREKF*VQLEAS
Trigger: CGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGA...ATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR GCA 90 bp CTGCCATTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCATAACATTTTCCTCTTaGAATGGACTCCACGCCAAA +
Preference number: 2 (lower is better)
Translates to: LPLNPPKSHDGLRAQHGVITFSS*NGLHAK
Trigger: TTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTAT...GACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAATGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp CTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTGTCTTTGAGGGGGCAGGAGACTaGCCACAAGCCAGGTGTGTA +
Preference number: 2 (lower is better)
Translates to: LMYLGTEFKLEAPNTFVFEGAGD*PQARCV
Trigger: TACACACCTGGCTTGTGGCCAGTCTCCTGCCCCCTC...AAAGACAAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 90 bp AGCCTCAAACTCCTACTACAGTCACTGATCCATAACATTTTCCTCTaGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTT +
Preference number: 2 (lower is better)
Translates to: SLKLLLQSLIHNIFL*QWTPRQSSSVLRHV
Trigger: AACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGATCAGTGACTGTAGTAGGAGTTTGAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR-3UTR TCA 90 bp TTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTCAAACTGATGGCTGCTaGGGTTTAAAACTGAATCTC +
Preference number: 2 (lower is better)
Translates to: FLLQWTPRQSSSVLRHVCQTDGC*GLKLNL
Trigger: GAGATTCAGTTTTAAACCTCAGCAGCCATCAGTTTG...ACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR GCA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCAGCTACCGGTTTCATCTaGTCACCCAGCCTCATGTAT +
Preference number: 2 (lower is better)
Translates to: ETYCWFICSERFLHTSLPATGFI*SPSLMY
Trigger: ATACATGAGGCTGGGTGAGCAGATGAAACCGGTAGC...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 90 bp AACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTaGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCCAG +
Preference number: 2 (lower is better)
Translates to: NIFLLQWTPRQSSSV*RHVCAPKSRFRKIQ
Trigger: CTGGATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR-3UTR GCA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCAAAGTAGCTCAGTCTTaGGGCATGTTTGTGCACCAA +
Preference number: 2 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKIKVAQS*GMFVHQ
Trigger: TTGGTGCACAAACATGCCGCAAGACTGAGCTACTTT...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR-3UTR CCA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCATTTTCCTCTTGCAATaGACTCCACGCCAAAGTAGC +
Preference number: 2 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKIIFLLQ*TPRQSS
Trigger: GCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAAT...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR-3UTR CCA 90 bp AGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGAGCTGAACCAAAGTGGATaGAAATTTCTCAGGACATAT +
Preference number: 2 (lower is better)
Translates to: RLQPFECPFLWIPQGGDELNQSG*KFLRTY
Trigger: ATATGTCCTGAGAAATTTCCATCCACTTTGGTTCAG...CTCATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp TTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATGCATTTCTTAGTCTGTAAATaGCAGGTTGAGCTGGCAGGA +
Preference number: 2 (lower is better)
Translates to: LVWIHMEPKSPTEWSHMHFLVCK*QVELAG
Trigger: TCCTGCCAGCTCAACCTGTCATTTACAGACTAAGAA...ATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp CCCAGCCTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTAAAGACTTGAATATGTaGGAGTTCCAGAGCCTCAAA +
Preference number: 2 (lower is better)
Translates to: PSLMYLGTEFKLEAPNTFKDLNM*EFQSLK
Trigger: TTTGAGGCTCTGGAACTCTCACATATTCAAGTCTTT...AAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAGGCTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp TTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATGCATTTCTATGATGTAGTTTaGGGTTTTCCCTCTCTCTCC +
Preference number: 2 (lower is better)
Translates to: LVWIHMEPKSPTEWSHMHFYDVV*GFPSLS
Trigger: GGAGAGAGAGGGAAAACCTCAAACTACATCATAGAA...ATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATTTAAAACTGAATCTCTaGCCTGGTGAAGATATGGCC +
Preference number: 2 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDLKLNL*PGEDMA
Trigger: GGCCATATCTTCACCAGGCCAGAGATTCAGTTTTAA...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 90 bp CATATGAGTGGAGGGACCTGTGGAGGAAAAATTATTATTACTACCTaGATGTCCGCTGAACCAAAGTGGATGGAAATTTCTCAGGACATA +
Preference number: 2 (lower is better)
Translates to: HMSGGTCGGKIIITT*MSAEPKWMEISQDI
Trigger: TATGTCCTGAGAAATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTAGTAATAATAATTTTTCCTCCACAGGTCCCTCCACTCATATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp TTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATGCATTCCTACTACAGTCACTaGTCCATAACATTTTCCTCT +
Preference number: 2 (lower is better)
Translates to: LVWIHMEPKSPTEWSHMHSYYSH*SITFSS
Trigger: AGAGGAAAATGTTATGGATCAGTGACTGTAGTAGGA...ATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGGAGATTGTTCAAAAATaGCACGAGAAAATCACCCAT +
Preference number: 2 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLEIVQK*HEKITH
Trigger: ATGGGTGATTTTCTCGTGTCATTTTTGAACAATCTC...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp TGCTACAGAAATAAAATCGTTAGTGAGTGGCATGATTACAAACCTCTAGTTCATACAGGACAAACGGTCTaGAGCTCAGGAAGCTTGACT +
Preference number: 2 (lower is better)
Translates to: CYRNKIVSEWHDYKPLVHTGQTV*SSGSLT
Trigger: AGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGT...ATGAACTAGAGGTTTGTAATCATGCCACTCACTAACGATTTTATTTCTGTAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp GAAATGGCACACTGTAGAAGGCAATCTTGTGACTTCCTTCTAGTTGTATATAAAACCAAAATCCCCAACTaGATGGAGTCACATGCATCA +
Preference number: 2 (lower is better)
Translates to: EMAHCRRQSCDFLLVVYKTKIPN*MESHAS
Trigger: TGATGCATGTGACTCCATTCAGTTGGGGATTTTGGT...TTTATATACAACTAGAAGGAAGTCACAAGATTGCCTTCTACAGTGTGCCATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CCA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCAAACACTTTTGTCTTTTaGAATCTAATCCAAGTGCCA +
Preference number: 2 (lower is better)
Translates to: ETYCWFICSERFLHTSLPNTFVF*NLIQVP
Trigger: TGGCACTTGGATTAGATTCCAAAAGACAAAAGTGTT...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR TCA 90 bp TGCTACAGAAATAAAATCGTTAGTGAGTGGCATGATTACAAACCTCTAGTTCATTACCTTGATGTCCGCTaGACCAAAGTGGATGGAAAT +
Preference number: 2 (lower is better)
Translates to: CYRNKIVSEWHDYKPLVHYLDVR*TKVDGN
Trigger: ATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTA...ATGAACTAGAGGTTTGTAATCATGCCACTCACTAACGATTTTATTTCTGTAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR GCA 72 bp GGTGGTGGCTGTGACGTCTGTGGAGGACGAGTGGGCTaGTGTTCCATTCGGGCCTGGATTTTACTGCTGCCC +
Preference number: 3 (lower is better)
Translates to: GGGCDVCGGRVG*CSIRAWILLLP
Trigger: GGGCAGCAGTAAAATCCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGACGTCACAGCCACCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR CCA 72 bp GAGGTGGTGGTGGCTGTGACGTCTGTGGAGGACGAGTaGGCTGCTGTTCCATTCGGGCCTGGATTTTACTGC +
Preference number: 3 (lower is better)
Translates to: EVVVAVTSVEDE*AAVPFGPGFYC
Trigger: GCAGTAAAATCCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGACGTCACAGCCACCACCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR TCA 72 bp CAGTGTTGGGCAGGACAGATGACAGGACAAACGGTCTaGAGCTCAGGAAGCTTGACTCACCAAGCCAGTGCC +
Preference number: 3 (lower is better)
Translates to: QCWAGQMTGQTV*SSGSLTHQASA
Trigger: GGCACTGGCTTGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCCCAACACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 72 bp AAGGCACAGAGGCAGGAAGAACAAGTCCGGTTTGGCTaGCAGGAGGGCATCTGTGAGAAGCCATCTGTGAAG +
Preference number: 3 (lower is better)
Translates to: KAQRQEEQVRFG*QEGICEKPSVK
Trigger: CTTCACAGATGGCTTCTCACAGATGCCCTCCTGCCAGCCAAACCGGACTTGTTCTTCCTGCCTCTGTGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 72 bp CAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTTaGAGCTCTGAATGGCATAGGTGGTGGAGGTGGTGG +
Preference number: 3 (lower is better)
Translates to: QGRSFGSNWRLR*SSEWHRWWRWW
Trigger: CCACCACCTCCACCACCTATGCCATTCAGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR CCA 72 bp ATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTaGCCGGCTGGTTCCATTGGCAACGGCAGGCCTACT +
Preference number: 3 (lower is better)
Translates to: ISEGVHELVASL*PAGSIGNGRPT
Trigger: AGTAGGCCTGCCGTTGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CAA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAGTGTTCATGAGCTGGTaGCTTCCTTGTGGCCGGCTG +
Preference number: 3 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPVFMSW*LPCGRL
Trigger: CAGCCGGCCACAAGGAAGCAACCAGCTCATGAACAC...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR TCA 72 bp CTTCTCTGCCTTCTACCCCACCAGGCTACAACCATTTaGATGTCCATTCCTGTGGATACCCCAGGGAGGAGA +
Preference number: 3 (lower is better)
Translates to: LLCLLPHQATTI*MSIPVDTPGRR
Trigger: TCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGGTGGGGTAGAAGGCAGAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 72 bp CTCAACTGCAAGTCATTTCTGAGGGTGTTCATGAGCTaGTTGCTTCCTTGTGGCCGGCTGGTTCCATTGGCA +
Preference number: 3 (lower is better)
Translates to: LNCKSFLRVFMS*LLPCGRLVPLA
Trigger: TGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGACTTGCAGTTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CAA 90 bp TTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTTGGAGCTCTGAATGGCCAAAGTAGCTCAGTCTaGCGGCATGTTTGTGCACCA +
Preference number: 3 (lower is better)
Translates to: FKGEVLGPTGGFVGALNGQSSSV*RHVCAP
Trigger: TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG...GCCATTCAGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CAA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCATTCAAGGGAGAAGTTTaGGGTCCAACTGGAGGCTTC +
Preference number: 3 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPFKGEV*GPTGGF
Trigger: GAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAA...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR CCA 72 bp GGGGTTATCTTTCAAGGGAGAAGTTTTGGGTCCAACTaGAGGCTTCGTTGGAGCTCTGAATGGCATAGGTGG +
Preference number: 3 (lower is better)
Translates to: GVIFQGRSFGSN*RLRWSSEWHRW
Trigger: CCACCTATGCCATTCAGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR-3UTR CAA 90 bp CCAGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGGTGAAGATATGGCCTTaGAGTAACTTAGACCAGGGC +
Preference number: 3 (lower is better)
Translates to: PGYNHLNVHSCGYPREEMVKIWP*SNLDQG
Trigger: GCCCTGGTCTAAGTTACTCAAAGGCCATATCTTCAC...CATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CAA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCGAGCTGGTTGCTTCCTaGTGGCCGGCTGGTTCCATT +
Preference number: 3 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKIELVAS*WPAGSI
Trigger: AATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTC...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR GCA 72 bp GTCACATGCATCAGCACAGTGGCTACCGGTTTCATCTaGTCACCCAGCCTCATGTATTTAGGGACTGAATTC +
Preference number: 3 (lower is better)
Translates to: VTCISTVATGFI*SPSLMYLGTEF
Trigger: GAATTCAGTCCCTAAATACATGAGGCTGGGTGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR GCA 72 bp GGTCTGAAGCTCAGGAAGCTTGACTCACCAAGCCAGTaGCACGTGCAAGCATTTCCTATAGAAACACGTCTT +
Preference number: 3 (lower is better)
Translates to: GLKLRKLDSPSQ*HVQAFPIETRL
Trigger: AAGACGTGTTTCTATAGGAAATGCTTGCACGTGGCACTGGCTTGGTGAGTCAAGCTTCCTGAGCTTCAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CAA 90 bp AACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATCAAAGTAGCTCAGTCTaGCGGCATGTTTGTGCACCA +
Preference number: 3 (lower is better)
Translates to: NIFLLQWTPRQSSSVLRHQSSSV*RHVCAP
Trigger: TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG...ATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR-3UTR CAA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCATTACTGCTGGTTCATTaGTTCGGAGAGGTTTCTTCA +
Preference number: 3 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPLLLVH*FGEVSS
Trigger: TGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAA...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 72 bp GACTTCATTCCACTGGTACCAACCACTTGGCCAAACTaGTGGCTGCTGAGGTTTAAAACTGAATCTCTGGCC +
Preference number: 3 (lower is better)
Translates to: DFIPLVPTTWPN*WLLRFKTESLA
Trigger: GGCCAGAGATTCAGTTTTAAACCTCAGCAGCCATCAGTTTGGCCAAGTGGTTGGTACCAGTGGAATGAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR GCA 72 bp ACATGGAACCAAAATCCCCAACTGAATGGAGTCACATaGATCAGCACAGTGGCTACCGGTTTCATCTGCTCA +
Preference number: 3 (lower is better)
Translates to: TWNQNPQLNGVT*ISTVATGFICS
Trigger: TGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 72 bp GTATGGATCCACATGGAACCAAAATCCCCAACTGAATaGAGTCACATGCATCAGCACAGTGGCTACCGGTTT +
Preference number: 3 (lower is better)
Translates to: VWIHMEPKSPTE*SHMHQHSGYRF
Trigger: AAACCGGTAGCCACTGTGCTGATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CAA 90 bp TCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTGGTTCCAACTGCTGCTGCTCATTaGTTCAATAATGTCAACTTC +
Preference number: 3 (lower is better)
Translates to: SFLRVFMSWLLPCGRLVPTAAAH*FNNVNF
Trigger: GAAGTTGACATTATTGAACAAATGAGCAGCAGCAGT...TGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR TCA 72 bp TCACCAACTGACACTCAAGGACTCCATTCTGTATTCTaGGGTCCATTTCTATCCAGGCTTGTCAGGCTGAGT +
Preference number: 3 (lower is better)
Translates to: SPTDTQGLHSVF*GPFLSRLVRLS
Trigger: ACTCAGCCTGACAAGCCTGGATAGAAATGGACCTCAGAATACAGAATGGAGTCCTTGAGTGTCAGTTGGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 72 bp ACTTCAGCCCTCAGCTCTCTTTTGATGTCATCCAACTaGGGTTCAGGTGAGGGGTTATCTTTCAAGGGAGAA +
Preference number: 3 (lower is better)
Translates to: TSALSSLLMSSN*GSGEGLSFKGE
Trigger: TTCTCCCTTGAAAGATAACCCCTCACCTGAACCTCAGTTGGATGACATCAAAAGAGAGCTGAGGGCTGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR GCA 72 bp TCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTaGGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAA +
Preference number: 3 (lower is better)
Translates to: SCNGLHAKVAQS*GMFVHQKVGFE
Trigger: TTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR CCA 72 bp CTACAGTCACTGATCCATAACATTTTCCTCTTGCAATaGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCAT +
Preference number: 3 (lower is better)
Translates to: LQSLIHNIFLLQ*TPRQSSSVLRH
Trigger: ATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGATCAGTGACTGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR TCA 72 bp GAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTaGTCCATAACATTTTCCTCTTGCAATGGACTCCAC +
Preference number: 3 (lower is better)
Translates to: ESSRASNSYYSH*SITFSSCNGLH
Trigger: GTGGAGTCCATTGCAAGAGGAAAATGTTATGGATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR-3UTR CAA 90 bp TTTCTATCCAGGCTTGTCAGGCTGAGTCAGACAAAACTTCCTTACCACTTTGTGCATAACATTTTCCTCTaGCAATGGACTCCACGCCAA +
Preference number: 3 (lower is better)
Translates to: FLSRLVRLSQTKLPYHFVHNIFL*QWTPRQ
Trigger: TTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATG...CACAAAGTGGTAAGGAAGTTTTGTCTGACTCAGCCTGACAAGCCTGGATAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CAA 90 bp CAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGCATAACATTTTCCTCTaGCAATGGACTCCACGCCAA +
Preference number: 3 (lower is better)
Translates to: QSSSVLRHVCAPKSRFRKHNIFL*QWTPRQ
Trigger: TTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATG...CTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
3UTR TCA 72 bp GTGCCACGTGCAAGCATTTCCTATAGAAACACGTCTTaGCCCAACATGCCAAAAACCATAGTTCTGTCTACA +
Preference number: 3 (lower is better)
Translates to: VPRASISYRNTS*PNMPKTIVLST
Trigger: TGTAGACAGAACTATGGTTTTTGGCATGTTGGGTCAAGACGTGTTTCTATAGGAAATGCTTGCACGTGGCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 72 bp TTCCACTCCTACCTCCCCTTGCTAAAATCCACTGACTaGAGAATACTTAGTATGGATCCACATGGAACCAAA +
Preference number: 3 (lower is better)
Translates to: FHSYLPLLKSTD*RILSMDPHGTK
Trigger: TTTGGTTCCATGTGGATCCATACTAAGTATTCTTCAGTCAGTGGATTTTAGCAAGGGGAGGTAGGAGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CAA 90 bp TGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACAGGTTACTCCATACACTGGTACCAACCACTaGGCCAAACTGATGGCTGCT +
Preference number: 3 (lower is better)
Translates to: WKFLRTYSSKLQKQVTPYTGTNH*AKLMAA
Trigger: AGCAGCCATCAGTTTGGCCAAGTGGTTGGTACCAGT...GTATGGAGTAACCTGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 72 bp GAGGGACCTGTGGAGGAAAAATTATTATTACTACCTTaGTGTCCGCTGAACCAAAGTGGATGGAAATTTCTC +
Preference number: 3 (lower is better)
Translates to: EGPVEEKLLLLP*CPLNQSGWKFL
Trigger: GAGAAATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTAGTAATAATAATTTTTCCTCCACAGGTCCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 72 bp CAATTGGTCTTGTCTTCCAACCTATTGGTTAAGGCCTaGGTTTCAGAAATCCTACCTTCCTTGCCAAATAGA +
Preference number: 3 (lower is better)
Translates to: QLVLSSNLLVKA*VSEILPSLPNR
Trigger: TCTATTTGGCAAGGAAGGTAGGATTTCTGAAACTCAGGCCTTAACCAATAGGTTGGAAGACAAGACCAATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR-3UTR CAA 90 bp TGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACAGGTTACTCCATACTCTGTAAATGACAGGTaGAGCTGGCAGGACTCCATG +
Preference number: 3 (lower is better)
Translates to: WKFLRTYSSKLQKQVTPYSVNDR*SWQDSM
Trigger: CATGGAGTCCTGCCAGCTCAACCTGTCATTTACAGA...GTATGGAGTAACCTGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 72 bp TCTGGGCTCACTATGATGATGAAACAGTTGACTCTATaGAGTTTAACTCTAATGAAAGCCCCTATGACAGAC +
Preference number: 3 (lower is better)
Translates to: SGLTMMMKQLTL*SLTLMKAPMTD
Trigger: GTCTGTCATAGGGGCTTTCATTAGAGTTAAACTTCATAGAGTCAACTGTTTCATCATCATAGTGAGCCCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 72 bp TCAGGGAGTCAGGTACAAAACAGTGGTACAAAAGCATaGATAGATACGCCTTATCAAAGAATGTGCTCATTT +
Preference number: 3 (lower is better)
Translates to: SGSQVQNSGTKA*IDTPYQRMCSF
Trigger: AAATGAGCACATTCTTTGATAAGGCGTATCTATTCATGCTTTTGTACCACTGTTTTGTACCTGACTCCCTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 72 bp AAATACAAATCGGTCAGGGAGTCAGGTACAAAACAGTaGTACAAAAGCATGAATAGATACGCCTTATCAAAG +
Preference number: 3 (lower is better)
Translates to: KYKSVRESGTKQ*YKSMNRYALSK
Trigger: CTTTGATAAGGCGTATCTATTCATGCTTTTGTACCACTGTTTTGTACCTGACTCCCTGACCGATTTGTATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR TCA 72 bp TGGAGGAAAAATTATTATTACTACCTTGATGTCCGCTaGACCAAAGTGGATGGAAATTTCTCAGGACATATT +
Preference number: 3 (lower is better)
Translates to: WRKNYYYYLDVR*TKVDGNFSGHI
Trigger: AATATGTCCTGAGAAATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTAGTAATAATAATTTTTCCTCCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CCA 72 bp ATTATTATTACTACCTTGATGTCCGCTGAACCAAAGTaGATGGAAATTTCTCAGGACATATTCATCCAAACT +
Preference number: 3 (lower is better)
Translates to: IIITTLMSAEPK*MEISQDIFIQT
Trigger: AGTTTGGATGAATATGTCCTGAGAAATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTAGTAATAATAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GTGGCTGTGACGTCTGTGGAGGACGAGTGGGCTGCTGTTCCATTCGGGCCTGGACCGAGCTTCTGGCGCTaGCGTCTGGGAGGACTGTGC +
Preference number: 4 (lower is better)
Translates to: VAVTSVEDEWAAVPFGPGPSFWR*RLGGLC
Trigger: GCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGG...TCCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGACGTCACAGCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCCGCGATCCGAGCTTCTaGCGCTGGCGTCTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGRDPSF*RWRLGG
Trigger: TCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCG...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GTGGTGGTGGCTGTGACGTCTGTGGAGGACGAGTGGGCTGCTGTTCCATTCGGGTTGCGGTCCCATTCATaGCCCCGCACCTGCCTCGCA +
Preference number: 4 (lower is better)
Translates to: VVVAVTSVEDEWAAVPFGLRSHS*PRTCLA
Trigger: TGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAA...CCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGACGTCACAGCCACCACCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp CTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTGGTTCCATTGGCACGTCTGGGAGGACTGTaGTTCCGGGCCACCGCTCTG +
Preference number: 4 (lower is better)
Translates to: LRVFMSWLLPCGRLVPLARLGGL*FRATAL
Trigger: CAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACG...TGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp GAGTCACCACAGCCAGCCCAGTACCTGCTTTTAAGGAGCTCATACCGACCAGAGTCATGGCCCCGCACCTaGCTCGCACCCAGATCGGCG +
Preference number: 4 (lower is better)
Translates to: ESPQPAQYLLLRSSYRPESWPRT*LAPRSA
Trigger: CGCCGATCTGGGTGCGAGGCAGGTGCGGGGCCATGA...CTCTGGTCGGTATGAGCTCCTTAAAAGCAGGTACTGGGCTGGCTGTGGTGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GTGGCTGTGACGTCTGTGGAGGACGAGTGGGCTGCTGTTCCATTCGGGCCTGGAAGAGCTCTCAGAGTCTaGAGAGCTGCTCCCACTGCT +
Preference number: 4 (lower is better)
Translates to: VAVTSVEDEWAAVPFGPGRALRV*RAAPTA
Trigger: AGCAGTGGGAGCAGCTCTTCAGACTCTGAGAGCTCT...TCCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGACGTCACAGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCATCGGCGCTCTCCCGGTaGAGCCGCGATCCGAGCTTC +
Preference number: 4 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPSALSR*SRDPSF
Trigger: GAAGCTCGGATCGCGGCTGCACCGGGAGAGCGCCGA...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTGTCCTCGCCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCACTGCGGAGGAGAGGCTaGGCCATTGTCCTCGCCTCC +
Preference number: 4 (lower is better)
Translates to: LSSPPLLELSSSLPEELSLRRRG*AIVLAS
Trigger: GGAGGCGAGGACAATGGCCCAGCCTCTCCTCCGCAG...TGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp GGAGGAGAGGCTGGGCCATTGTCCTCGCCTCCACTGCTGGAGCTATCGTCATCATTCCTTGTGGCCGGCTaGTTCCATTGGCAACGGCAG +
Preference number: 4 (lower is better)
Translates to: GGEAGPLSSPPLLELSSSFLVAG*FHWQRQ
Trigger: CTGCCGTTGCCAATGGAACCAGCCGGCCACAAGGAA...TGATGACGATAGCTCCAGCAGTGGAGGCGAGGACAATGGCCCAGCCTCTCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp GAGGAGAGGCTGGGCCATTGTCCTCGCCTCCACTGCTGGAGCTATCGTCATCACCTGGTTGCTTCCTTGTaGCCGGCTGGTTCCATTGGC +
Preference number: 4 (lower is better)
Translates to: EERLGHCPRLHCWSYRHHLVASL*PAGSIG
Trigger: GCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAG...GTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACAATGGCCCAGCCTCTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR TCA 90 bp TGCGGAGGAGAGGCTGGGCCATTGTCCTCGCCTCCACTGCTGGAGCTATCGTCACAACTGAGGTTCAGGTaGGGGGTTATCTTTCAAGGG +
Preference number: 4 (lower is better)
Translates to: CGGEAGPLSSPPLLELSSQLRFR*GVIFQG
Trigger: CCCTTGAAAGATAACCCCTCACCTGAACCTCAGTTG...TGACGATAGCTCCAGCAGTGGAGGCGAGGACAATGGCCCAGCCTCTCCTCCGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR TCA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAGTAGGGCTGCTGGTGTaGAGGCTGCGGAGGAGAGGC +
Preference number: 4 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPVGLLV*RLRRRG
Trigger: GCCTCTCCTCCGCAGCCTTCACACCAGCAGCCCTAC...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR TCA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCACACACACACCCTGCTaGACCAGCCTCTCAAATAGG +
Preference number: 4 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGTHTPC*TSLSNR
Trigger: CCTATTTGAGAGGCTGGTTCAGCAGGGTGTGTGTGT...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp CCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGAGTCTGAAGTCCAGCAGCGGGTTTaGGGTCCCATTCATGGCCCC +
Preference number: 4 (lower is better)
Translates to: PPLLELSSSLPEELSESEVQQRV*GPIHGP
Trigger: GGGGCCATGAATGGGACCGCAAACCCGCTGCTGGAC...TTCAGACTCTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp CTGCCATTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCTTGCGGTCCCATTCATaGCCCCGCACCTGCCTCGCA +
Preference number: 4 (lower is better)
Translates to: LPLNPPKSHDGLRAQHGVLRSHS*PRTCLA
Trigger: TGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAA...GACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAATGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GTGGTGGTGGCTGTGACGTCTGTGGAGGACGAGTGGGCTGCTGTTCCATTCGGGAGTTTTGGGTCCAACTaGAGGCTTCGTTGGAGCTCT +
Preference number: 4 (lower is better)
Translates to: VVVAVTSVEDEWAAVPFGSFGSN*RLRWSS
Trigger: AGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACT...CCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGACGTCACAGCCACCACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR TCA 90 bp TCAGGTGAGGGGTTATCTTTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTAGGGCTGCTGGTGTaGAGGCTGCGGAGGAGAGGC +
Preference number: 4 (lower is better)
Translates to: SGEGLSFKGEVLGPTGGFVGLLV*RLRRRG
Trigger: GCCTCTCCTCCGCAGCCTTCACACCAGCAGCCCTAC...GAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCCTCACCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp CCAGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGGGAGGACGAGTGGGCTaGTGTTCCATTCGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PGYNHLNVHSCGYPREEMGGRVG*CSIRAW
Trigger: CCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCC...CATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp CTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTGGTTCCATTGGCATGTCCTCGCCTCCACTaGTGGAGCTATCGTCATCAC +
Preference number: 4 (lower is better)
Translates to: LRVFMSWLLPCGRLVPLACPRLH*WSYRHH
Trigger: GTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACA...TGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCGAACACAGTCATGGGTaGTGTGGATCCAGGGATATG +
Preference number: 4 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGEHSHG*CGSRDM
Trigger: CATATCCCTGGATCCACACCACCCATGACTGTGTTC...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 72 bp GTCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTaGTGGCCGGCTGGTTCCATTGGCAACGGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: VISEGVHELVAS*WPAGSIGNGRP
Trigger: AGGCCTGCCGTTGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp GCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAATCGGCGCTCTCCCGGTaGAGCCGCGATCCGAGCTTC +
Preference number: 4 (lower is better)
Translates to: AKVAQSCGMFVHQKVGFESALSR*SRDPSF
Trigger: GAAGCTCGGATCGCGGCTGCACCGGGAGAGCGCCGA...TTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR GCA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCAAGAGCTGCTCCCACTaGTGCTGCTCATTTGTTCAA +
Preference number: 4 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGKSCSH*CCSFVQ
Trigger: TTGAACAAATGAGCAGCAGCAGTGGGAGCAGCTCTT...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCCAAGTTCCTGGAACCTaGCCCAGTTTGAGCAAGTTA +
Preference number: 4 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGQVPGT*PSLSKL
Trigger: TAACTTGCTCAAACTGGGGCAGGTTCCAGGAACTTG...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp AGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGAGTCCGGGCCACCGCTCTaGAAGACAAGGAGAGCCGAG +
Preference number: 4 (lower is better)
Translates to: RLQPFECPFLWIPQGGDESGPPL*KTRRAE
Trigger: CTCGGCTCTCCTTGTCTTCCAGAGCGGTGGCCCGGA...CTCATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GCTGCTCCCACTGCTGCTGCTCATTTGTTCAATAATGTCAACTTCAGCCCTCAGTCCGGGCCACCGCTCTaGAAGACAAGGAGAGCCGAG +
Preference number: 4 (lower is better)
Translates to: AAPTAAAHLFNNVNFSPQSGPPL*KTRRAE
Trigger: CTCGGCTCTCCTTGTCTTCCAGAGCGGTGGCCCGGA...CTGAGGGCTGAAGTTGACATTATTGAACAAATGAGCAGCAGCAGTGGGAGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp CCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGAGTCTGAATCTGTGGAGGACGAGTaGGCTGCTGTTCCATTCGGG +
Preference number: 4 (lower is better)
Translates to: PPLLELSSSLPEELSESESVEDE*AAVPFG
Trigger: CCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGA...TTCAGACTCTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp CTGCCATTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCTTCCCCTCCACTAGCTaGGGAGGGAGAGGCCATATG +
Preference number: 4 (lower is better)
Translates to: LPLNPPKSHDGLRAQHGVFPSTS*GGRGHM
Trigger: CATATGGCCTCTCCCTCCCCAGCTAGTGGAGGGGAA...GACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAATGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp CACATGCATCAGCACAGTGGCTACCGGTTTCATCTGCTCACCCAGCCTCATGTAGCCGTTTGTTCCCCTTaGACACAGTCATGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: HMHQHSGYRFHLLTQPHVAVCSP*TQSWVV
Trigger: CACCACCCATGACTGTGTTCAAGGGGAACAAACGGC...TACATGAGGCTGGGTGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GAGCTGCTCCCACTGCTGCTGCTCATTTGTTCAATAATGTCAACTTCAGCCCTCAGGTGGTGGTGGCTGTaGCGTCTGTGGAGGACGAGT +
Preference number: 4 (lower is better)
Translates to: ELLPLLLLICSIMSTSALRWWWL*RLWRTS
Trigger: ACTCGTCCTCCACAGACGTCACAGCCACCACCACCT...GAGGGCTGAAGTTGACATTATTGAACAAATGAGCAGCAGCAGTGGGAGCAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp CCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGAGTCTGAACAGAGTCTGAAGAGCTaGTCCCACTGCTGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: PPLLELSSSLPEELSESEQSLKS*SHCCCS
Trigger: TGAGCAGCAGCAGTGGGAGCAGCTCTTCAGACTCTG...TTCAGACTCTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCATGTCCTCGCCTCCACTaGTGGAGCTATCGTCATCAC +
Preference number: 4 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPCPRLH*WSYRHH
Trigger: GTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACA...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TGTCCTCGCCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGTCAAGGGAGAAGTTTTaGGTCCAACTGGAGGCTTCG +
Preference number: 4 (lower is better)
Translates to: CPRLHCWSYRHHFPKSSQSREKF*VQLEAS
Trigger: CGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGA...CTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp TCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTGGTTCCAAGGGTGTTCATGAGCTaGTTGCTTCCTTGTGGCCGG +
Preference number: 4 (lower is better)
Translates to: SFLRVFMSWLLPCGRLVPRVFMS*LLPCGR
Trigger: CCGGCCACAAGGAAGCAACCAGCTCATGAACACCCT...TGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp TTGTGGCCGGCTGGTTCCATTGGCAACGGCAGGCCTACTGTTGTAGGGCTGCTGATTTTCCTCTTGCAATaGACTCCACGCCAAAGTAGC +
Preference number: 4 (lower is better)
Translates to: LWPAGSIGNGRPTVVGLLIFLLQ*TPRQSS
Trigger: GCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAAT...CAGCAGCCCTACAACAGTAGGCCTGCCGTTGCCAATGGAACCAGCCGGCCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCACATGCTGCTGGGCAGTaGCTCTCTGGGCTCACTATG +
Preference number: 4 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPHAAGQ*LSGLTM
Trigger: CATAGTGAGCCCAGAGAGCCACTGCCCAGCAGCATG...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCCATGTATTTAGGGACTaGATTCAAGCTAGAAGCACC +
Preference number: 4 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGHVFRD*IQARST
Trigger: GGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATG...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp TTTCTATCCAGGCTTGTCAGGCTGAGTCAGACAAAACTTCCTTACCACTTTGTGCGTCTGGGAGGACTGTaGTTCCGGGCCACCGCTCTG +
Preference number: 4 (lower is better)
Translates to: FLSRLVRLSQTKLPYHFVRLGGL*FRATAL
Trigger: CAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACG...CACAAAGTGGTAAGGAAGTTTTGTCTGACTCAGCCTGACAAGCCTGGATAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCACGTTGGAGCTCTGAATaGCATAGGTGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPRWSSE*HRWWRW
Trigger: CCACCTCCACCACCTATGCCATTCAGAGCTCCAACG...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CCA 90 bp TGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAGAACAAGTCCGGTTTaGCTGGCAGGAGGGCATCTG +
Preference number: 4 (lower is better)
Translates to: CNGLHAKVAQSCGMFVHQRTSPV*LAGGHL
Trigger: CAGATGCCCTCCTGCCAGCCAAACCGGACTTGTTCT...TTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCAAGAGTCCACAAAGATaGTACCCACAGAACCTCAAA +
Preference number: 4 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGKSPQR*YPQNLK
Trigger: TTTGAGGTTCTGTGGGTACCATCTTTGTGGACTCTT...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCCTAGCGCTGCACTTCACTGGCTaGGTAGTCTTCTCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: LNPPKSHDGLRAQHGVLALHFTG*VVFSAF
Trigger: GAAGGCAGAGAAGACTACCCAGCCAGTGAAGTGCAG...CGCTAGGACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 72 bp TCTTCTCTGCCTTCTACCCCACCAGGCTACAACCATTaGAATGTCCATTCCTGTGGATACCCCAGGGAGGAG +
Preference number: 4 (lower is better)
Translates to: SSLPSTPPGYNH*NVHSCGYPREE
Trigger: CTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGGTGGGGTAGAAGGCAGAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 72 bp AACTGCAAGTCATTTCTGAGGGTGTTCATGAGCTGGTaGCTTCCTTGTGGCCGGCTGGTTCCATTGGCAACG +
Preference number: 4 (lower is better)
Translates to: NCKSFLRVFMSW*LPCGRLVPLAT
Trigger: CGTTGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGACTTGCAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR TCA 90 bp TTGTCCTCGCCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCATCTCCTTTGCCAACTTaGAGCTCTCCTTCACAGGAA +
Preference number: 4 (lower is better)
Translates to: LSSPPLLELSSSLPEELSSPLPT*SSPSQE
Trigger: TTCCTGTGAAGGAGAGCTTCAAGTTGGCAAAGGAGA...TGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR TCA 90 bp GCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGGTGGTGGTGGCTGTaGCGTCTGTGGAGGACGAGT +
Preference number: 4 (lower is better)
Translates to: AKVAQSCGMFVHQKVGFERWWWL*RLWRTS
Trigger: ACTCGTCCTCCACAGACGTCACAGCCACCACCACCT...TTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR TCA 90 bp TTGTCCTCGCCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCACCCTCAGCTCTCTTTTaGTGTCATCCAACTGAGGTT +
Preference number: 4 (lower is better)
Translates to: LSSPPLLELSSSLPEELSPSALF*CHPTEV
Trigger: AACCTCAGTTGGATGACATCAAAAGAGAGCTGAGGG...TGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGGCGAGGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp CAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGGTCCAGCAGCGGGTTTaGGGTCCCATTCATGGCCCC +
Preference number: 4 (lower is better)
Translates to: QSSSVLRHVCAPKSRFRKVQQRV*GPIHGP
Trigger: GGGGCCATGAATGGGACCGCAAACCCGCTGCTGGAC...CTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR GCA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCAGGGCCTGGATTTTACTaGTGCCCTCAGCTCTTGTTT +
Preference number: 4 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPGPGFY*CPQLLF
Trigger: AAACAAGAGCTGAGGGCAGCAGTAAAATCCAGGCCC...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp GGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCCAGCACTAGTCATCACGGAGGACGAGTGGGCTaGTGTTCCATTCGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: GMFVHQKVGFERSSTSHHGGRVG*CSIRAW
Trigger: CCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCC...GTGATGACTAGTGCTGGATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp AGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGAGTCTGAATGGCATAGGTaGTGGAGGTGGTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: RLQPFECPFLWIPQGGDESEWHR*WRWWWL
Trigger: CAGCCACCACCACCTCCACCACCTATGCCATTCAGA...CTCATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TCAGGTGAGGGGTTATCTTTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCTCTGAATGGCATAGGTaGTGGAGGTGGTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: SGEGLSFKGEVLGPTGGFSEWHR*WRWWWL
Trigger: CAGCCACCACCACCTCCACCACCTATGCCATTCAGA...GAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCCTCACCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp TTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCCTAGCGAACTGGAGGCTTCGTTaGAGCTCTGAATGGCATAGG +
Preference number: 4 (lower is better)
Translates to: LNPPKSHDGLRAQHGVLANWRLR*SSEWHR
Trigger: CCTATGCCATTCAGAGCTCCAACGAAGCCTCCAGTT...CGCTAGGACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp TTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTAGAGCTCTCAGAGTCTaGAGAGCTGCTCCCACTGCT +
Preference number: 4 (lower is better)
Translates to: FSSCNGLHAKVAQSCGMFRALRV*RAAPTA
Trigger: AGCAGTGGGAGCAGCTCTTCAGACTCTGAGAGCTCT...AAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR TCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGAATCTCATGATGGGCTaGGAGCCCAGCACGGGGTCC +
Preference number: 4 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLNLMMG*EPSTGS
Trigger: GGACCCCGTGCTGGGCTCTCAGCCCATCATGAGATT...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp TGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAGCTACCGGTTTCATCTaGTCACCCAGCCTCATGTAT +
Preference number: 4 (lower is better)
Translates to: CNGLHAKVAQSCGMFVHQATGFI*SPSLMY
Trigger: ATACATGAGGCTGGGTGAGCAGATGAAACCGGTAGC...TTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTCCTCGCCTCCACTGCTaGAGCTATCGTCATCACTTC +
Preference number: 4 (lower is better)
Translates to: FSSCNGLHAKVAQSCGMFPRLHC*SYRHHF
Trigger: GAAGTGATGACGATAGCTCCAGCAGTGGAGGCGAGG...AAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CCA 90 bp GAGTCACCACAGCCAGCCCAGTACCTGCTTTTAAGGAGCTCATACCGACCAGAGAAATCCCCAACTGAATaGAGTCACATGCATCAGCAC +
Preference number: 4 (lower is better)
Translates to: ESPQPAQYLLLRSSYRPEKSPTE*SHMHQH
Trigger: GTGCTGATGCATGTGACTCCATTCAGTTGGGGATTT...CTCTGGTCGGTATGAGCTCCTTAAAAGCAGGTACTGGGCTGGCTGTGGTGACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCAACAACAGATCCATTTaGAAATGGCACACTGTAGAA +
Preference number: 4 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGNNRSI*KWHTVE
Trigger: TTCTACAGTGTGCCATTTCCAAATGGATCTGTTGTT...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp CCAGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGGATTGCTTACTCTGGTaGGTAAAGCTGGAGGGCAGA +
Preference number: 4 (lower is better)
Translates to: PGYNHLNVHSCGYPREEMDCLLW*VKLEGR
Trigger: TCTGCCCTCCAGCTTTACCCACCAGAGTAAGCAATC...CATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp CTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGCCGGCTGGTTCCATTGGCATCCTACTACAGTCACTaGTCCATAACATTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: LRVFMSWLLPCGRLVPLASYYSH*SITFSS
Trigger: AGAGGAAAATGTTATGGATCAGTGACTGTAGTAGGA...TGCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTCATGAACACCCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR TCA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATGAGGGAGAGGCCATATaGGTGGAGGGACCTGTGGAG +
Preference number: 4 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDEGEAI*VEGPVE
Trigger: CTCCACAGGTCCCTCCACTCATATGGCCTCTCCCTC...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp AGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGAGACAGGACAAACGGTCTaGAGCTCAGGAAGCTTGACT +
Preference number: 4 (lower is better)
Translates to: RLQPFECPFLWIPQGGDETGQTV*SSGSLT
Trigger: AGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGT...CTCATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp TTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGACTCACCAAGCCAGTaGCACGTGCAAGCATTTCCT +
Preference number: 4 (lower is better)
Translates to: FSSCNGLHAKVAQSCGMFDSPSQ*HVQAFP
Trigger: AGGAAATGCTTGCACGTGGCACTGGCTTGGTGAGTC...AAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp CTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTGTCTTTCCGAGCTTCTGGCGCTaGCGTCTGGGAGGACTGTGC +
Preference number: 4 (lower is better)
Translates to: LMYLGTEFKLEAPNTFVFPSFWR*RLGGLC
Trigger: GCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGG...AAAGACAAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTTGTTCCATTCGGGCCTaGATTTTACTGCTGCCCTCA +
Preference number: 4 (lower is better)
Translates to: FLLQWTPRQSSSVLRHVCCSIRA*ILLLPS
Trigger: TGAGGGCAGCAGTAAAATCCAGGCCCGAATGGAACA...ACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CCA 90 bp CCCAGCCTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTTCTGTGGAGGACGAGTaGGCTGCTGTTCCATTCGGG +
Preference number: 4 (lower is better)
Translates to: PSLMYLGTEFKLEAPNTFSVEDE*AAVPFG
Trigger: CCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGA...AAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAGGCTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GGTGAGGGGTTATCTTTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTTAACTGGAGGCTTCGTTaGAGCTCTGAATGGCATAGG +
Preference number: 4 (lower is better)
Translates to: GEGLSFKGEVLGPTGGFVNWRLR*SSEWHR
Trigger: CCTATGCCATTCAGAGCTCCAACGAAGCCTCCAGTT...AACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCTGGTTGCTTCCTTGTaGCCGGCTGGTTCCATTGGC +
Preference number: 4 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLLVASL*PAGSIG
Trigger: GCCAATGGAACCAGCCGGCCACAAGGAAGCAACCAG...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CCA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAGATTGCTTACTCTaGTGGGTAAAGCTGGAGGGC +
Preference number: 4 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPKDCLL*WVKLEG
Trigger: GCCCTCCAGCTTTACCCACCAGAGTAAGCAATCTTT...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCAAGTCCGGTTTGGCTaGCAGGAGGGCATCTGTGAG +
Preference number: 4 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLQVRFG*QEGICE
Trigger: CTCACAGATGCCCTCCTGCCAGCCAAACCGGACTTG...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 72 bp GGTTCAGGTGAGGGGTTATCTTTCAAGGGAGAAGTTTaGGGTCCAACTGGAGGCTTCGTTGGAGCTCTGAAT +
Preference number: 4 (lower is better)
Translates to: GSGEGLSFKGEV*GPTGGFVGALN
Trigger: ATTCAGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCCTCACCTGAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR TCA 90 bp CACATGCATCAGCACAGTGGCTACCGGTTTCATCTGCTCACCCAGCCTCATGTACCTGAATGCTGCTACTaGGTTTTTCCAGCACATATT +
Preference number: 4 (lower is better)
Translates to: HMHQHSGYRFHLLTQPHVPECCY*VFPAHI
Trigger: AATATGTGCTGGAAAAACTCAGTAGCAGCATTCAGG...TACATGAGGCTGGGTGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp AACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATATGGTCCTCACCAACTaGCACTCAAGGACTCCATTC +
Preference number: 4 (lower is better)
Translates to: NIFLLQWTPRQSSSVLRHMVLTN*HSRTPF
Trigger: GAATGGAGTCCTTGAGTGTCAGTTGGTGAGGACCAT...ATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp CCAGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGACCAAAATCCCCAACTaGATGGAGTCACATGCATCA +
Preference number: 4 (lower is better)
Translates to: PGYNHLNVHSCGYPREEMTKIPN*MESHAS
Trigger: TGATGCATGTGACTCCATTCAGTTGGGGATTTTGGT...CATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAATCCACCAAAATCTCATaGTGGGCTGAGAGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: AKVAQSCGMFVHQKVGFESTKIS*WAESPA
Trigger: TGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGA...TTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp CTGCCATTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCTATAGAAACACGTCTTaGCCCAACATGCCAAAAACC +
Preference number: 4 (lower is better)
Translates to: LPLNPPKSHDGLRAQHGVYRNTS*PNMPKT
Trigger: GGTTTTTGGCATGTTGGGTCAAGACGTGTTTCTATA...GACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAATGGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp TTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCCTAGCGGTGAGAAGCCATCTGTaGAGCCAAATTCTTGATTTC +
Preference number: 4 (lower is better)
Translates to: LNPPKSHDGLRAQHGVLAVRSHL*SQILDF
Trigger: GAAATCAAGAATTTGGCTTCACAGATGGCTTCTCAC...CGCTAGGACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp TTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATGCATGCAGGAGGGCATCTGTaGGAAGCCATCTGTGAAGCC +
Preference number: 4 (lower is better)
Translates to: LVWIHMEPKSPTEWSHMHAGGHL*EAICEA
Trigger: GGCTTCACAGATGGCTTCTCACAGATGCCCTCCTGC...ATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp CACATGCATCAGCACAGTGGCTACCGGTTTCATCTGCTCACCCAGCCTCATGTACTATTGGTTAAGGCCTaGGTTTCAGAAATCCTACCT +
Preference number: 4 (lower is better)
Translates to: HMHQHSGYRFHLLTQPHVLLVKA*VSEILP
Trigger: AGGTAGGATTTCTGAAACTCAGGCCTTAACCAATAG...TACATGAGGCTGGGTGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp CAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGCAGAGTCTGAAGAGCTaGTCCCACTGCTGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: QSSSVLRHVCAPKSRFRKQSLKS*SHCCCS
Trigger: TGAGCAGCAGCAGTGGGAGCAGCTCTTCAGACTCTG...CTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR GCA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAGTAGCTCAGTCTTaGGGCATGTTTGTGCACCAA +
Preference number: 4 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPKVAQS*GMFVHQ
Trigger: TTGGTGCACAAACATGCCGCAAGACTGAGCTACTTT...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CCA 90 bp TTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATGCATTTCCTTGTGGCCGGCTaGTTCCATTGGCAACGGCAG +
Preference number: 4 (lower is better)
Translates to: LVWIHMEPKSPTEWSHMHFLVAG*FHWQRQ
Trigger: CTGCCGTTGCCAATGGAACCAGCCGGCCACAAGGAA...ATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GCAGTGGCTCTCTGGGCTCACTATGATGATGAAACAGTTGACTCTATGAAGTTTGCTGGCAGGACTCCATaGTCCTCACCAACTGACACT +
Preference number: 4 (lower is better)
Translates to: AVALWAHYDDETVDSMKFAGRTP*SSPTDT
Trigger: AGTGTCAGTTGGTGAGGACCATGGAGTCCTGCCAGC...AAACTTCATAGAGTCAACTGTTTCATCATCATAGTGAGCCCAGAGAGCCACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 72 bp CTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTaGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGA +
Preference number: 4 (lower is better)
Translates to: LLQWTPRQSSSV*RHVCAPKSRFR
Trigger: TCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR TCA 90 bp ACTCAACTGCAAGTCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGTTGATGTCATCCAACTaGGGTTCAGGTGAGGGGTTA +
Preference number: 4 (lower is better)
Translates to: TQLQVISEGVHELVASLWLMSSN*GSGEGL
Trigger: TAACCCCTCACCTGAACCTCAGTTGGATGACATCAA...CCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGACTTGCAGTTGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR TCA 90 bp CCAGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGCAAACTGATGGCTGCTaGGGTTTAAAACTGAATCTC +
Preference number: 4 (lower is better)
Translates to: PGYNHLNVHSCGYPREEMQTDGC*GLKLNL
Trigger: GAGATTCAGTTTTAAACCTCAGCAGCCATCAGTTTG...CATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GAGTCACCACAGCCAGCCCAGTACCTGCTTTTAAGGAGCTCATACCGACCAGAGCAGGTTACTCCATACTaGTTACAGGATGATTTATCA +
Preference number: 4 (lower is better)
Translates to: ESPQPAQYLLLRSSYRPEQVTPY*LQDDLS
Trigger: TGATAAATCATCCTGTAATCAGTATGGAGTAACCTG...CTCTGGTCGGTATGAGCTCCTTAAAAGCAGGTACTGGGCTGGCTGTGGTGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp CCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGAGTCTGAAATAACATTTTCCTCTTaGAATGGACTCCACGCCAAA +
Preference number: 4 (lower is better)
Translates to: PPLLELSSSLPEELSESEITFSS*NGLHAK
Trigger: TTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTAT...TTCAGACTCTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR GCA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATCTGGGTAGTCTTCTCTaGCTTCTACCCCACCAGGCT +
Preference number: 4 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDLGSLL*LLPHQA
Trigger: AGCCTGGTGGGGTAGAAGGCAGAGAAGACTACCCAG...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCATCAGCTGTCTCCAAATaGCTGGAATGTTTTCCTATG +
Preference number: 4 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPSAVSK*LECFPM
Trigger: CATAGGAAAACATTCCAGGCATTTGGAGACAGCTGA...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGGGGCCTGGATTTTACTaGTGCCCTCAGCTAGGGATA +
Preference number: 4 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLGPGFY*CPQLGI
Trigger: TATCCCTAGCTGAGGGCAGCAGTAAAATCCAGGCCC...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp TTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGGATCCAGGGATATGTaGCAGTGTAATTGTGACTTC +
Preference number: 4 (lower is better)
Translates to: FLLQWTPRQSSSVLRHVCGSRDM*QCNCDF
Trigger: GAAGTCACAATTACACTGCCACATATCCCTGGATCC...ACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATGCATCGTTGGAGCTCTGAATaGCATAGGTGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: LVWIHMEPKSPTEWSHMHRWSSE*HRWWRW
Trigger: CCACCTCCACCACCTATGCCATTCAGAGCTCCAACG...ATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACAGGTTACTCCATACCTGCGGAGGAGAGGCTaGGCCATTGTCCTCGCCTCC +
Preference number: 4 (lower is better)
Translates to: WKFLRTYSSKLQKQVTPYLRRRG*AIVLAS
Trigger: GGAGGCGAGGACAATGGCCCAGCCTCTCCTCCGCAG...GTATGGAGTAACCTGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATGCATAGGGTGTTCATGAGCTaGTTGCTTCCTTGTGGCCGG +
Preference number: 4 (lower is better)
Translates to: LVWIHMEPKSPTEWSHMHRVFMS*LLPCGR
Trigger: CCGGCCACAAGGAAGCAACCAGCTCATGAACACCCT...ATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCAATGACAGGTTGAGCTaGCAGGACTCCATGGTCCTC +
Preference number: 4 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKINDRLS*QDSMVL
Trigger: GAGGACCATGGAGTCCTGCCAGCTCAACCTGTCATT...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCACAACTGAGGTTCAGGTaGGGGGTTATCTTTCAAGGG +
Preference number: 4 (lower is better)
Translates to: ETYCWFICSERFLHTSLPQLRFR*GVIFQG
Trigger: CCCTTGAAAGATAACCCCTCACCTGAACCTCAGTTG...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp CTGCCATTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCGAGATTGTTCAAAAATaGCACGAGAAAATCACCCAT +
Preference number: 4 (lower is better)
Translates to: LPLNPPKSHDGLRAQHGVEIVQK*HEKITH
Trigger: ATGGGTGATTTTCTCGTGTCATTTTTGAACAATCTC...GACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAATGGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GGCAGGACAGATGACAGGACAAACGGTCTGAAGCTCAGGAAGCTTGACTCACCATTATTATTACTACCTTaGTGTCCGCTGAACCAAAGT +
Preference number: 4 (lower is better)
Translates to: GRTDDRTNGLKLRKLDSPLLLLP*CPLNQS
Trigger: ACTTTGGTTCAGCGGACATCAAGGTAGTAATAATAA...TGGTGAGTCAAGCTTCCTGAGCTTCAGACCGTTTGTCCTGTCATCTGTCCTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp TTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTAAAGTAGCTCAGTCTTaGGGCATGTTTGTGCACCAA +
Preference number: 4 (lower is better)
Translates to: FSSCNGLHAKVAQSCGMFKVAQS*GMFVHQ
Trigger: TTGGTGCACAAACATGCCGCAAGACTGAGCTACTTT...AAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR GCA 90 bp CCAGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGATAACATTTTCCTCTTaGAATGGACTCCACGCCAAA +
Preference number: 4 (lower is better)
Translates to: PGYNHLNVHSCGYPREEMITFSS*NGLHAK
Trigger: TTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTAT...CATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp CCCAGCCTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTCTGAATGGAGTCACATaGATCAGCACAGTGGCTACC +
Preference number: 4 (lower is better)
Translates to: PSLMYLGTEFKLEAPNTFLNGVT*ISTVAT
Trigger: GGTAGCCACTGTGCTGATGCATGTGACTCCATTCAG...AAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAGGCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGTTTCTAAGTCCAGACTaGTTCCCCTCCACTAGCTGG +
Preference number: 4 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLFLSPD*FPSTSW
Trigger: CCAGCTAGTGGAGGGGAAGCAGTCTGGACTTAGAAA...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATCAGTCATGGGTGGTGTaGATCCAGGGATATGTGGCA +
Preference number: 4 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDQSWVV*IQGYVA
Trigger: TGCCACATATCCCTGGATCCACACCACCCATGACTG...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GCAGTGGCTCTCTGGGCTCACTATGATGATGAAACAGTTGACTCTATGAAGTTTTCAAGGGAGAAGTTTTaGGTCCAACTGGAGGCTTCG +
Preference number: 4 (lower is better)
Translates to: AVALWAHYDDETVDSMKFSREKF*VQLEAS
Trigger: CGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGA...AAACTTCATAGAGTCAACTGTTTCATCATCATAGTGAGCCCAGAGAGCCACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCCATGCATCAGCACAGTaGCTACCGGTTTCATCTGCT +
Preference number: 4 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKIHASAQ*LPVSSA
Trigger: AGCAGATGAAACCGGTAGCCACTGTGCTGATGCATG...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAGAGTGGAGGGACCTGTaGAGGAAAAATTATTATTAC +
Preference number: 4 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPEWRDL*RKNYYY
Trigger: GTAATAATAATTTTTCCTCCACAGGTCCCTCCACTC...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCACCCTCAGCTCTCTTTTaGTGTCATCCAACTGAGGTT +
Preference number: 4 (lower is better)
Translates to: ETYCWFICSERFLHTSLPPSALF*CHPTEV
Trigger: AACCTCAGTTGGATGACATCAAAAGAGAGCTGAGGG...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCAACCACTTGGCCAAACTaGTGGCTGCTGAGGTTTAAA +
Preference number: 4 (lower is better)
Translates to: ETYCWFICSERFLHTSLPTTWPN*WLLRFK
Trigger: TTTAAACCTCAGCAGCCATCAGTTTGGCCAAGTGGT...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCAAGAGCTGCTCCCACTaGTGCTGCTCATTTGTTCAA +
Preference number: 4 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKIKSCSH*CCSFVQ
Trigger: TTGAACAAATGAGCAGCAGCAGTGGGAGCAGCTCTT...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR GCA 90 bp CCAGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGAAATCCTACCTTCCTTaGCAAATAGAAACATCCACT +
Preference number: 4 (lower is better)
Translates to: PGYNHLNVHSCGYPREEMKSYLP*QIETST
Trigger: AGTGGATGTTTCTATTTGGCAAGGAAGGTAGGATTT...CATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp CTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTGTCTTTCCTCGCCTCCACTGCTaGAGCTATCGTCATCACTTC +
Preference number: 4 (lower is better)
Translates to: LMYLGTEFKLEAPNTFVFPRLHC*SYRHHF
Trigger: GAAGTGATGACGATAGCTCCAGCAGTGGAGGCGAGG...AAAGACAAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp CACATGCATCAGCACAGTGGCTACCGGTTTCATCTGCTCACCCAGCCTCATGTAAACACTTTTGTCTTTTaGAATCTAATCCAAGTGCCA +
Preference number: 4 (lower is better)
Translates to: HMHQHSGYRFHLLTQPHVNTFVF*NLIQVP
Trigger: TGGCACTTGGATTAGATTCCAAAAGACAAAAGTGTT...TACATGAGGCTGGGTGAGCAGATGAAACCGGTAGCCACTGTGCTGATGCATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp CCAGGCTACAACCATTTGAATGTCCATTCCTGTGGATACCCCAGGGAGGAGATGCTGAACCAAAGTGGATaGAAATTTCTCAGGACATAT +
Preference number: 4 (lower is better)
Translates to: PGYNHLNVHSCGYPREEMLNQSG*KFLRTY
Trigger: ATATGTCCTGAGAAATTTCCATCCACTTTGGTTCAG...CATCTCCTCCCTGGGGTATCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGACAGAACCTCAAAAGTaGGGTATGGAGGGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLTEPQK*GMEGEK
Trigger: CTTCTCTCCCTCCATACCCCACTTTTGAGGTTCTGT...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp ACTCAACTGCAAGTCATTTCTGAGGGTGTTCATGAGCTGGTTGCTTCCTTGTGGTCAGCTAGGGATATGTaGCAGTGTAATTGTGACTTC +
Preference number: 4 (lower is better)
Translates to: TQLQVISEGVHELVASLWSARDM*QCNCDF
Trigger: GAAGTCACAATTACACTGCCACATATCCCTAGCTGA...CCACAAGGAAGCAACCAGCTCATGAACACCCTCAGAAATGACTTGCAGTTGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
3UTR CAA 72 bp CTCCTACTACAGTCACTGATCCATAACATTTTCCTCTaGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTG +
Preference number: 4 (lower is better)
Translates to: LLLQSLIHNIFL*QWTPRQSSSVL
Trigger: CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGATCAGTGACTGTAGTAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR TCA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCTTCTTAGTCTGTAAATaGCAGGTTGAGCTGGCAGGA +
Preference number: 4 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKIFLVCK*QVELAG
Trigger: TCCTGCCAGCTCAACCTGTCATTTACAGACTAAGAA...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GCAGTGGCTCTCTGGGCTCACTATGATGATGAAACAGTTGACTCTATGAAGTTTGGCCTGGTGAAGATATaGCCTTTGAGTAACTTAGAC +
Preference number: 4 (lower is better)
Translates to: AVALWAHYDDETVDSMKFGLVKI*PLSNLD
Trigger: GTCTAAGTTACTCAAAGGCCATATCTTCACCAGGCC...AAACTTCATAGAGTCAACTGTTTCATCATCATAGTGAGCCCAGAGAGCCACTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TTTCTATCCAGGCTTGTCAGGCTGAGTCAGACAAAACTTCCTTACCACTTTGTGTCCGCTGAACCAAAGTaGATGGAAATTTCTCAGGAC +
Preference number: 4 (lower is better)
Translates to: FLSRLVRLSQTKLPYHFVSAEPK*MEISQD
Trigger: GTCCTGAGAAATTTCCATCCACTTTGGTTCAGCGGA...CACAAAGTGGTAAGGAAGTTTTGTCTGACTCAGCCTGACAAGCCTGGATAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAACTTGTTTTCTTCACCTaGATGCTGCTACTGAGTTTT +
Preference number: 4 (lower is better)
Translates to: AKVAQSCGMFVHQKVGFELVFFT*MLLLSF
Trigger: AAAACTCAGTAGCAGCATTCAGGTGAAGAAAACAAG...TTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCATTCTATGATGTAGTTTaGGGTTTTCCCTCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: ETYCWFICSERFLHTSLPFYDVV*GFPSLS
Trigger: GGAGAGAGAGGGAAAACCTCAAACTACATCATAGAA...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp GAGCTGCTCCCACTGCTGCTGCTCATTTGTTCAATAATGTCAACTTCAGCCCTCGGAAGTGTCTATAGATaGTGGTTTAAAATCATAACG +
Preference number: 4 (lower is better)
Translates to: ELLPLLLLICSIMSTSALGSVYR*WFKIIT
Trigger: CGTTATGATTTTAAACCAGCATCTATAGACACTTCC...GAGGGCTGAAGTTGACATTATTGAACAAATGAGCAGCAGCAGTGGGAGCAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CCA 90 bp CTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTGTCTTTAGTTTTGGGTCCAACTaGAGGCTTCGTTGGAGCTCT +
Preference number: 4 (lower is better)
Translates to: LMYLGTEFKLEAPNTFVFSFGSN*RLRWSS
Trigger: AGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACT...AAAGACAAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATATTTTCCTCTTGCAATaGACTCCACGCCAAAGTAGC +
Preference number: 4 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDIFLLQ*TPRQSS
Trigger: GCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAAT...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CCA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATTTTAGTTCAAGTTCCTaGAACCTGCCCCAGTTTGAG +
Preference number: 4 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDFSSSS*NLPQFE
Trigger: CTCAAACTGGGGCAGGTTCCAGGAACTTGAACTAAA...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GCAGTGGCTCTCTGGGCTCACTATGATGATGAAACAGTTGACTCTATGAAGTTTTGTCTTCCAACCTATTaGTTAAGGCCTGAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: AVALWAHYDDETVDSMKFCLPTY*LRPEFQ
Trigger: CTGAAACTCAGGCCTTAACCAATAGGTTGGAAGACA...AAACTTCATAGAGTCAACTGTTTCATCATCATAGTGAGCCCAGAGAGCCACTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp CAGGCTTGTCAGGCTGAGTCAGACAAAACTTCCTTACCACTTTGTGTCAACAATTCCTACTACAGTCACTaGTCCATAACATTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: QACQAESDKTSLPLCVNNSYYSH*SITFSS
Trigger: AGAGGAAAATGTTATGGATCAGTGACTGTAGTAGGA...ATTGTTGACACAAAGTGGTAAGGAAGTTTTGTCTGACTCAGCCTGACAAGCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGAAAGACTTGAATATGTaGGAGTTCCAGAGCCTCAAA +
Preference number: 4 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLKDLNM*EFQSLK
Trigger: TTTGAGGCTCTGGAACTCTCACATATTCAAGTCTTT...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CCA 90 bp GATACGCCTTATCAAAGAATGTGCTCATTTCATATTGCAGAACTTCTATCTAGAGAGAGGCCATATGAGTaGAGGGACCTGTGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: DTPYQRMCSFHIAELLSRERPYE*RDLWRK
Trigger: TTTCCTCCACAGGTCCCTCCACTCATATGGCCTCTC...TCTAGATAGAAGTTCTGCAATATGAAATGAGCACATTCTTTGATAAGGCGTATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GAAATGGCACACTGTAGAAGGCAATCTTGTGACTTCCTTCTAGTTGTATATAAATGGGCAGTGGCTCTCTaGGCTCACTATGATGATGAA +
Preference number: 4 (lower is better)
Translates to: EMAHCRRQSCDFLLVVYKWAVAL*AHYDDE
Trigger: TTCATCATCATAGTGAGCCCAGAGAGCCACTGCCCA...TTTATATACAACTAGAAGGAAGTCACAAGATTGCCTTCTACAGTGTGCCATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCACTGTCTCCAAATGCCTaGAATGTTTTCCTATGTCTA +
Preference number: 4 (lower is better)
Translates to: ETYCWFICSERFLHTSLPLSPNA*NVFLCL
Trigger: TAGACATAGGAAAACATTCCAGGCATTTGGAGACAG...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 72 bp GGAGGGACCTGTGGAGGAAAAATTATTATTACTACCTaGATGTCCGCTGAACCAAAGTGGATGGAAATTTCT +
Preference number: 4 (lower is better)
Translates to: GGTCGGKIIITT*MSAEPKWMEIS
Trigger: AGAAATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTAGTAATAATAATTTTTCCTCCACAGGTCCCTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GAAATGGCACACTGTAGAAGGCAATCTTGTGACTTCCTTCTAGTTGTATATAAATCTCCTTTGCCAACTTaGAGCTCTCCTTCACAGGAA +
Preference number: 4 (lower is better)
Translates to: EMAHCRRQSCDFLLVVYKSPLPT*SSPSQE
Trigger: TTCCTGTGAAGGAGAGCTTCAAGTTGGCAAAGGAGA...TTTATATACAACTAGAAGGAAGTCACAAGATTGCCTTCTACAGTGTGCCATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp CTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTGTCTTTTACCTTGATGTCCGCTaGACCAAAGTGGATGGAAAT +
Preference number: 4 (lower is better)
Translates to: LMYLGTEFKLEAPNTFVFYLDVR*TKVDGN
Trigger: ATTTCCATCCACTTTGGTTCAGCGGACATCAAGGTA...AAAGACAAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp TGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACAGGTTACTCCATACTTGATGTCATCCAACTaGGGTTCAGGTGAGGGGTTA +
Preference number: 4 (lower is better)
Translates to: WKFLRTYSSKLQKQVTPYLMSSN*GSGEGL
Trigger: TAACCCCTCACCTGAACCTCAGTTGGATGACATCAA...GTATGGAGTAACCTGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR GCA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGGGAAGTGTCTATAGATaGTGGTTTAAAATCATAACG +
Preference number: 4 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLGSVYR*WFKIIT
Trigger: CGTTATGATTTTAAACCAGCATCTATAGACACTTCC...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CCA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCATCAGGTACAAAACAGTaGTACAAAAGCATGAATAGA +
Preference number: 4 (lower is better)
Translates to: ETYCWFICSERFLHTSLPSGTKQ*YKSMNR
Trigger: TCTATTCATGCTTTTGTACCACTGTTTTGTACCTGA...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp CCCAGCCTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTAAAATCGTTAGTGAGTaGCATGATTACAAACCTCTA +
Preference number: 4 (lower is better)
Translates to: PSLMYLGTEFKLEAPNTFKIVSE*HDYKPL
Trigger: TAGAGGTTTGTAATCATGCCACTCACTAACGATTTT...AAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAGGCTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp TGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACAGGTTACTCCATACTTAAAACTGAATCTCTaGCCTGGTGAAGATATGGCC +
Preference number: 4 (lower is better)
Translates to: WKFLRTYSSKLQKQVTPYLKLNL*PGEDMA
Trigger: GGCCATATCTTCACCAGGCCAGAGATTCAGTTTTAA...GTATGGAGTAACCTGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 72 bp CAATGTACATCTAAAAGTCCCATGTATAGGAATCTCTaGATTCCTACAAATGAGATTCAAGGGAGAGAACAG +
Preference number: 4 (lower is better)
Translates to: QCTSKSPMYRNL*IPTNEIQGREQ
Trigger: CTGTTCTCTCCCTTGAATCTCATTTGTAGGAATCAAGAGATTCCTATACATGGGACTTTTAGATGTACATTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp TGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACAGGTTACTCCATACAAAGACTTGAATATGTaGGAGTTCCAGAGCCTCAAA +
Preference number: 4 (lower is better)
Translates to: WKFLRTYSSKLQKQVTPYKDLNM*EFQSLK
Trigger: TTTGAGGCTCTGGAACTCTCACATATTCAAGTCTTT...GTATGGAGTAACCTGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR TCA 90 bp GAAATGGCACACTGTAGAAGGCAATCTTGTGACTTCCTTCTAGTTGTATATAAAAGTGGTACAAAAGCATaGATAGATACGCCTTATCAA +
Preference number: 4 (lower is better)
Translates to: EMAHCRRQSCDFLLVVYKSGTKA*IDTPYQ
Trigger: TTGATAAGGCGTATCTATTCATGCTTTTGTACCACT...TTTATATACAACTAGAAGGAAGTCACAAGATTGCCTTCTACAGTGTGCCATTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CCA 90 bp GATACGCCTTATCAAAGAATGTGCTCATTTCATATTGCAGAACTTCTATCTAGATTAGAAACTTACTGCTaGTTCATTTGTTCGGAGAGG +
Preference number: 4 (lower is better)
Translates to: DTPYQRMCSFHIAELLSRLETYC*FICSER
Trigger: CCTCTCCGAACAAATGAACCAGCAGTAAGTTTCTAA...TCTAGATAGAAGTTCTGCAATATGAAATGAGCACATTCTTTGATAAGGCGTATC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
3UTR CAA 72 bp AGGATGATTTATCACACATTCATTAAATATAGAACATaGACTAGCAACCAGTTTCCTCCAACAACAGATCCA +
Preference number: 4 (lower is better)
Translates to: RMIYHTFIKYRT*TSNQFPPTTDP
Trigger: TGGATCTGTTGTTGGAGGAAACTGGTTGCTAGTCAATGTTCTATATTTAATGAATGTGTGATAAATCATCCT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS GCA 90 bp CGCGGTCCAGCAGCGGGTTTGCGGTCCCATTCATGGCCCCGCACCTaGCTCGCACCCAGATCGGCGCTCTCCCGGTGCAGCCGCGATCCG +
Preference number: 5 (lower is better)
Translates to: RGPAAGLRSHSWPRT*LAPRSALSRCSRDP
Trigger: CGGATCGCGGCTGCACCGGGAGAGCGCCGATCTGGGTGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAAACCCGCTGCTGGACCGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS GCA 90 bp TCATGGCCCCGCACCTGCCTCGCACCCAGATCGGCGCTCTCCCGGTaGAGCCGCGATCCGAGCTTCTGGCGCTGGCGTCTGGGAGGACTG +
Preference number: 5 (lower is better)
Translates to: SWPRTCLAPRSALSR*SRDPSFWRWRLGGL
Trigger: CAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCACCGGGAGAGCGCCGATCTGGGTGCGAGGCAGGTGCGGGGCCATGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 90 bp GCACCCAGATCGGCGCTCTCCCGGTGCAGCCGCGATCCGAGCTTCTaGCGCTGGCGTCTGGGAGGACTGTGCTTCCGGGCCACCGCTCTG +
Preference number: 5 (lower is better)
Translates to: APRSALSRCSRDPSF*RWRLGGLCFRATAL
Trigger: CAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCACCGGGAGAGCGCCGATCTGGGTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS GCA 90 bp TGCAGCCGCGATCCGAGCTTCTGGCGCTGGCGTCTGGGAGGACTGTaGTTCCGGGCCACCGCTCTGGAAGACAAGGAGAGCCGAGCCGGC +
Preference number: 5 (lower is better)
Translates to: CSRDPSFWRWRLGGL*FRATALEDKESRAG
Trigger: GCCGGCTCGGCTCTCCTTGTCTTCCAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 90 bp TCTGGCGCTGGCGTCTGGGAGGACTGTGCTTCCGGGCCACCGCTCTaGAAGACAAGGAGAGCCGAGCCGGCACCCACCCGGGTCCAGAAG +
Preference number: 5 (lower is better)
Translates to: SGAGVWEDCASGPPL*KTRRAEPAPTRVQK
Trigger: CTTCTGGACCCGGGTGGGTGCCGGCTCGGCTCTCCTTGTCTTCCAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 90 bp AGATCGGCGCTCTCCCGGTGCAGCCGCGATCCGAGCTTCTGGCGCTaGCGTCTGGGAGGACTGTGCTTCCGGGCCACCGCTCTGGAAGAC +
Preference number: 5 (lower is better)
Translates to: RSALSRCSRDPSFWR*RLGGLCFRATALED
Trigger: GTCTTCCAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCACCGGGAGAGCGCCGATCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 90 bp GGCAATGTTCCTCGCGGTCCAGCAGCGGGTTTGCGGTCCCATTCATaGCCCCGCACCTGCCTCGCACCCAGATCGGCGCTCTCCCGGTGC +
Preference number: 5 (lower is better)
Translates to: GNVPRGPAAGLRSHS*PRTCLAPRSALSRC
Trigger: GCACCGGGAGAGCGCCGATCTGGGTGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAAACCCGCTGCTGGACCGCGAGGAACATTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS GCA 90 bp CTCCCCGAGCCTCAGGCAATGTTCCTCGCGGTCCAGCAGCGGGTTTaGGGTCCCATTCATGGCCCCGCACCTGCCTCGCACCCAGATCGG +
Preference number: 5 (lower is better)
Translates to: LPEPQAMFLAVQQRV*GPIHGPAPASHPDR
Trigger: CCGATCTGGGTGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAAACCCGCTGCTGGACCGCGAGGAACATTGCCTGAGGCTCGGGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 90 bp CGCTCTCCCGGTGCAGCCGCGATCCGAGCTTCTGGCGCTGGCGTCTaGGAGGACTGTGCTTCCGGGCCACCGCTCTGGAAGACAAGGAGA +
Preference number: 5 (lower is better)
Translates to: RSPGAAAIRASGAGV*EDCASGPPLWKTRR
Trigger: TCTCCTTGTCTTCCAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCACCGGGAGAGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 90 bp GGCTGGAGCTTGGGGCCTGGTGGACCATCACCTGGTGTCTGTAGGTaGACCCGGTCTCCCACAGGTGACATCAACCTGAGGGTGGCGTCT +
Preference number: 5 (lower is better)
Translates to: GWSLGPGGPSPGVCR*TRSPTGDINLRVAS
Trigger: AGACGCCACCCTCAGGTTGATGTCACCTGTGGGAGACCGGGTCCACCTACAGACACCAGGTGATGGTCCACCAGGCCCCAAGCTCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000617675.1
CDS-3UTR CAA 90 bp TTGTGGCCGGCTGGTTCCATTGGCAACGGCAGGCCTACTGTTGTAGGGCTGCTGGGTCCAGCAGCGGGTTaGCGGTCCCATTCATGGCCC +
Preference number: 5 (lower is better)
Translates to: LWPAGSIGNGRPTVVGLLGPAAG*RSHSWP
Trigger: GGGCCATGAATGGGACCGCAAACCCGCTGCTGGACC...CAGCAGCCCTACAACAGTAGGCCTGCCGTTGCCAATGGAACCAGCCGGCCACAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS CCA 90 bp ACAGGTGACATCAACCTGAGGGTGGCGTCTTTAGAGACAGGCACATaGGCAGCCCTGTTCCCTTCGCCTCTACTGCGAGGCCTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: TGDINLRVASLETGT*AALFPSPLLRGLGR
Trigger: TCTCCCCAGGCCTCGCAGTAGAGGCGAAGGGAACAGGGCTGCCCATGTGCCTGTCTCTAAAGACGCCACCCTCAGGTTGATGTCACCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000617675.1
CDS-3UTR CAA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAGGAGAGGCTGGGCCATaGTCCTCGCCTCCACTGCTG +
Preference number: 5 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPGEAGP*SSPPLL
Trigger: CAGCAGTGGAGGCGAGGACAATGGCCCAGCCTCTCC...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CAA 90 bp TTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTTGGAGCTCTGAATGGCGGCCGGCTGGTTCCATaGGCAACGGCAGGCCTACTG +
Preference number: 5 (lower is better)
Translates to: FKGEVLGPTGGFVGALNGGRLVP*ATAGLL
Trigger: CAGTAGGCCTGCCGTTGCCAATGGAACCAGCCGGCC...GCCATTCAGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CAA 90 bp ACCTACACTAGGGTAGGTGGTGTGAGCATGCTGCTGGGCAGTGGCTCTCTGGGCGGAACCTGCCCCAGTTaGAGCAAGTTAAGAGCAGTG +
Preference number: 5 (lower is better)
Translates to: TYTRVGGVSMLLGSGSLGGTCPS*SKLRAV
Trigger: CACTGCTCTTAACTTGCTCAAACTGGGGCAGGTTCC...GCCCAGAGAGCCACTGCCCAGCAGCATGCTCACACCACCTACCCTAGTGTAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp GGTGAGGGGTTATCTTTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTTGGAGAGGCTGGGCCATaGTCCTCGCCTCCACTGCTG +
Preference number: 5 (lower is better)
Translates to: GEGLSFKGEVLGPTGGFVGEAGP*SSPPLL
Trigger: CAGCAGTGGAGGCGAGGACAATGGCCCAGCCTCTCC...AACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCCTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS CCA 90 bp TGTGACGTCTGTGGAGGACGAGTGGGCTGCTGTTCCATTCGGGCCTaGATTTTACTGCTGCCCTCAGCTAGGGATATGTGGCAGTGTAAT +
Preference number: 5 (lower is better)
Translates to: CDVCGGRVGCCSIRA*ILLLPSARDMWQCN
Trigger: ATTACACTGCCACATATCCCTAGCTGAGGGCAGCAGTAAAATCCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCCACAGACGTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS CCA 90 bp ACACCCTTGGGTTTTTGTACGAAGCTATTTAATGAGCCTGTGTCTTaGGGACTCAGCAGGCTGGAGCTTGGGGCCTGGTGGACCATCACC +
Preference number: 5 (lower is better)
Translates to: TPLGFCTKLFNEPVS*GLSRLELGAWWTIT
Trigger: GGTGATGGTCCACCAGGCCCCAAGCTCCAGCCTGCTGAGTCCCCAAGACACAGGCTCATTAAATAGCTTCGTACAAAAACCCAAGGGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000617675.1
CDS-3UTR CAA 90 bp GCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAGGTCCAGCAGCGGGTTaGCGGTCCCATTCATGGCCC +
Preference number: 5 (lower is better)
Translates to: AKVAQSCGMFVHQKVGFEGPAAG*RSHSWP
Trigger: GGGCCATGAATGGGACCGCAAACCCGCTGCTGGACC...TTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CAA 90 bp CTGTGGAGGACGAGTGGGCTGCTGTTCCATTCGGGCCTGGATTTTACTGCTGCCATCTCCTTTGCCAACTaGAAGCTCTCCTTCACAGGA +
Preference number: 5 (lower is better)
Translates to: LWRTSGLLFHSGLDFTAAISFAN*KLSFTG
Trigger: TCCTGTGAAGGAGAGCTTCAAGTTGGCAAAGGAGAT...GGCAGCAGTAAAATCCAGGCCCGAATGGAACAGCAGCCCACTCGTCCTCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CAA 90 bp GAAACTTACTGCTGGTTCATTTGTTCGGAGAGGTTTCTTCACACCTCTCTTCCAGGCCGGCTGGTTCCATaGGCAACGGCAGGCCTACTG +
Preference number: 5 (lower is better)
Translates to: ETYCWFICSERFLHTSLPGRLVP*ATAGLL
Trigger: CAGTAGGCCTGCCGTTGCCAATGGAACCAGCCGGCC...TGGAAGAGAGGTGTGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAAGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp TCAGGTGAGGGGTTATCTTTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGAGCTGGTTGCTTCCTaGTGGCCGGCTGGTTCCATT +
Preference number: 5 (lower is better)
Translates to: SGEGLSFKGEVLGPTGGFELVAS*WPAGSI
Trigger: AATGGAACCAGCCGGCCACAAGGAAGCAACCAGCTC...GAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCCTCACCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CAA 90 bp CCTCCACTGCTGGAGCTATCGTCATCACTTCCCGAAGAGCTCTCAGAGTCTGAATTCAAGGGAGAAGTTTaGGGTCCAACTGGAGGCTTC +
Preference number: 5 (lower is better)
Translates to: PPLLELSSSLPEELSESEFKGEV*GPTGGF
Trigger: GAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAA...TTCAGACTCTGAGAGCTCTTCGGGAAGTGATGACGATAGCTCCAGCAGTGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CAA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAACTGGTACCAACCACTaGGCCAAACTGATGGCTGCT +
Preference number: 5 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPTGTNH*AKLMAA
Trigger: AGCAGCCATCAGTTTGGCCAAGTGGTTGGTACCAGT...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp GCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAAGAACAAGTCCGGTTaGGCTGGCAGGAGGGCATCT +
Preference number: 5 (lower is better)
Translates to: AKVAQSCGMFVHQKVGFEKNKSG*AGRRAS
Trigger: AGATGCCCTCCTGCCAGCCAAACCGGACTTGTTCTT...TTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATGTGTTCATGAGCTGGTaGCTTCCTTGTGGCCGGCTG +
Preference number: 5 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDVFMSW*LPCGRL
Trigger: CAGCCGGCCACAAGGAAGCAACCAGCTCATGAACAC...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CAA 90 bp ATCTTTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTTGGAGCTCTGAACAAAGTAGCTCAGTCTaGCGGCATGTTTGTGCACCA +
Preference number: 5 (lower is better)
Translates to: IFQGRSFGSNWRLRWSSEQSSSV*RHVCAP
Trigger: TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG...TTCAGAGCTCCAACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CAA 90 bp CTGCCATTAAATCCACCAAAATCTCATGATGGGCTGAGAGCCCAGCACGGGGTCGAAATCCTACCTTCCTaGCCAAATAGAAACATCCAC +
Preference number: 5 (lower is better)
Translates to: LPLNPPKSHDGLRAQHGVEILPS*PNRNIH
Trigger: GTGGATGTTTCTATTTGGCAAGGAAGGTAGGATTTC...GACCCCGTGCTGGGCTCTCAGCCCATCATGAGATTTTGGTGGATTTAATGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp TTAGTATGGATCCACATGGAACCAAAATCCCCAACTGAATGGAGTCACATGCATGGCCGTTTGTTCCCCTaGAACACAGTCATGGGTGGT +
Preference number: 5 (lower is better)
Translates to: LVWIHMEPKSPTEWSHMHGRLFP*NTVMGG
Trigger: ACCACCCATGACTGTGTTCAAGGGGAACAAACGGCC...ATGCATGTGACTCCATTCAGTTGGGGATTTTGGTTCCATGTGGATCCATACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp GGTGAGGGGTTATCTTTCAAGGGAGAAGTTTTGGGTCCAACTGGAGGCTTCGTTCATAACATTTTCCTCTaGCAATGGACTCCACGCCAA +
Preference number: 5 (lower is better)
Translates to: GEGLSFKGEVLGPTGGFVHNIFL*QWTPRQ
Trigger: TTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATG...AACGAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAAAGATAACCCCTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS-3UTR CAA 90 bp GAGTCACCACAGCCAGCCCAGTACCTGCTTTTAAGGAGCTCATACCGACCAGAGATTATTATTACTACCTaGATGTCCGCTGAACCAAAG +
Preference number: 5 (lower is better)
Translates to: ESPQPAQYLLLRSSYRPEIIITT*MSAEPK
Trigger: CTTTGGTTCAGCGGACATCAAGGTAGTAATAATAAT...CTCTGGTCGGTATGAGCTCCTTAAAAGCAGGTACTGGGCTGGCTGTGGTGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp TTTCTATCCAGGCTTGTCAGGCTGAGTCAGACAAAACTTCCTTACCACTTTGTGTTCAAGGGAGAAGTTTaGGGTCCAACTGGAGGCTTC +
Preference number: 5 (lower is better)
Translates to: FLSRLVRLSQTKLPYHFVFKGEV*GPTGGF
Trigger: GAAGCCTCCAGTTGGACCCAAAACTTCTCCCTTGAA...CACAAAGTGGTAAGGAAGTTTTGTCTGACTCAGCCTGACAAGCCTGGATAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp TTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAACTGCTGCTGCTCATTaGTTCAATAATGTCAACTTC +
Preference number: 5 (lower is better)
Translates to: LQWTPRQSSSVLRHVCAPTAAAH*FNNVNF
Trigger: GAAGTTGACATTATTGAACAAATGAGCAGCAGCAGT...TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CAA 90 bp ATCCATAACATTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGTCTGTAAATGACAGGTaGAGCTGGCAGGACTCCATG +
Preference number: 5 (lower is better)
Translates to: IHNIFLLQWTPRQSSSVLSVNDR*SWQDSM
Trigger: CATGGAGTCCTGCCAGCTCAACCTGTCATTTACAGA...CAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCATCTCCTTTGCCAACTaGAAGCTCTCCTTCACAGGA +
Preference number: 5 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKIISFAN*KLSFTG
Trigger: TCCTGTGAAGGAGAGCTTCAAGTTGGCAAAGGAGAT...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CAA 90 bp CCCAGCCTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTGTGAAGATATGGCCTTaGAGTAACTTAGACCAGGGC +
Preference number: 5 (lower is better)
Translates to: PSLMYLGTEFKLEAPNTFVKIWP*SNLDQG
Trigger: GCCCTGGTCTAAGTTACTCAAAGGCCATATCTTCAC...AAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAGGCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp GCAGTGGCTCTCTGGGCTCACTATGATGATGAAACAGTTGACTCTATGAAGTTTCATAACATTTTCCTCTaGCAATGGACTCCACGCCAA +
Preference number: 5 (lower is better)
Translates to: AVALWAHYDDETVDSMKFHNIFL*QWTPRQ
Trigger: TTGGCGTGGAGTCCATTGCAAGAGGAAAATGTTATG...AAACTTCATAGAGTCAACTGTTTCATCATCATAGTGAGCCCAGAGAGCCACTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp AGACTTGAATATGTGAGAGTTCCAGAGCCTCAAACTCCTACTACAGTCACTGATCCAGGCTACAACCATTaGAATGTCCATTCCTGTGGA +
Preference number: 5 (lower is better)
Translates to: RLEYVRVPEPQTPTTVTDPGYNH*NVHSCG
Trigger: TCCACAGGAATGGACATTCAAATGGTTGTAGCCTGG...ATCAGTGACTGTAGTAGGAGTTTGAGGCTCTGGAACTCTCACATATTCAAGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp TTTTCCTCTTGCAATGGACTCCACGCCAAAGTAGCTCAGTCTTGCGGCATGTTTACTCTTCAATTGGTCTaGTCTTCCAACCTATTGGTT +
Preference number: 5 (lower is better)
Translates to: FSSCNGLHAKVAQSCGMFTLQLV*SSNLLV
Trigger: AACCAATAGGTTGGAAGACAAGACCAATTGAAGAGT...AAACATGCCGCAAGACTGAGCTACTTTGGCGTGGAGTCCATTGCAAGAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp AGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGATCTTACTGCTGGTTCATTaGTTCGGAGAGGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: SSSVLRHVCAPKSRFRKILLLVH*FGEVSS
Trigger: TGAAGAAACCTCTCCGAACAAATGAACCAGCAGTAA...GATCTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp CCCAGCCTCATGTATTTAGGGACTGAATTCAAGCTAGAAGCACCCAACACTTTTCAACAACAGATCCATTaGGAAATGGCACACTGTAGA +
Preference number: 5 (lower is better)
Translates to: PSLMYLGTEFKLEAPNTFQQQIH*EMAHCR
Trigger: TCTACAGTGTGCCATTTCCAAATGGATCTGTTGTTG...AAAAGTGTTGGGTGCTTCTAGCTTGAATTCAGTCCCTAAATACATGAGGCTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp GCCAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAATTCCTAACTCTTCAATaGGTCTTGTCTTCCAACCTA +
Preference number: 5 (lower is better)
Translates to: AKVAQSCGMFVHQKVGFEFLTLQ*VLSSNL
Trigger: TAGGTTGGAAGACAAGACCAATTGAAGAGTTAGGAA...TTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS TCA 90 bp GGGATATGTGGCAGTGTAATTGTGACTTCATCTCCTTTGCCAACTTaGAGCTCTCCTTCACAGGAAGTGTCTATAGATGCTGGTTTAAAA +
Preference number: 5 (lower is better)
Translates to: GICGSVIVTSSPLPT*SSPSQEVSIDAGLK
Trigger: TTTTAAACCAGCATCTATAGACACTTCCTGTGAAGGAGAGCTTCAAGTTGGCAAAGGAGATGAAGTCACAATTACACTGCCACATATCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS-3UTR CAA 90 bp CAAAGTAGCTCAGTCTTGCGGCATGTTTGTGCACCAAAAAGTAGGTTTCGAAAGCAACACTTTTGTCTTTaGGAATCTAATCCAAGTGCC +
Preference number: 5 (lower is better)
Translates to: QSSSVLRHVCAPKSRFRKQHFCL*ESNPSA
Trigger: GGCACTTGGATTAGATTCCAAAAGACAAAAGTGTTG...CTTTCGAAACCTACTTTTTGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp TGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACAGGTTACTCCATACCAAAGTAGCTCAGTCTaGCGGCATGTTTGTGCACCA +
Preference number: 5 (lower is better)
Translates to: WKFLRTYSSKLQKQVTPYQSSSV*RHVCAP
Trigger: TGGTGCACAAACATGCCGCAAGACTGAGCTACTTTG...GTATGGAGTAACCTGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp TGCTACAGAAATAAAATCGTTAGTGAGTGGCATGATTACAAACCTCTAGTTCATAAAAACCATACAGTGTaGGGCAGGACAGATGACAGG +
Preference number: 5 (lower is better)
Translates to: CYRNKIVSEWHDYKPLVHKNHTV*GRTDDR
Trigger: CCTGTCATCTGTCCTGCCCAACACTGTATGGTTTTT...ATGAACTAGAGGTTTGTAATCATGCCACTCACTAACGATTTTATTTCTGTAGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS-3UTR CAA 90 bp TGGAAATTTCTCAGGACATATTCATCCAAACTACAAAAACAGGTTACTCCATACACTGCTGCTGCTCATTaGTTCAATAATGTCAACTTC +
Preference number: 5 (lower is better)
Translates to: WKFLRTYSSKLQKQVTPYTAAAH*FNNVNF
Trigger: GAAGTTGACATTATTGAACAAATGAGCAGCAGCAGT...GTATGGAGTAACCTGTTTTTGTAGTTTGGATGAATATGTCCTGAGAAATTTCCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS GCA 72 bp CGCACCTGCCTCGCACCCAGATCGGCGCTCTCCCGGTaGAGCCGCGATCCGAGCTTCTGGCGCTGGCGTCTG +
Preference number: 6 (lower is better)
Translates to: RTCLAPRSALSR*SRDPSFWRWRL
Trigger: CAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCACCGGGAGAGCGCCGATCTGGGTGCGAGGCAGGTGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 72 bp TCGGCGCTCTCCCGGTGCAGCCGCGATCCGAGCTTCTaGCGCTGGCGTCTGGGAGGACTGTGCTTCCGGGCC +
Preference number: 6 (lower is better)
Translates to: SALSRCSRDPSF*RWRLGGLCFRA
Trigger: GGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCACCGGGAGAGCGCCGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS GCA 72 bp GCAGCGGGTTTGCGGTCCCATTCATGGCCCCGCACCTaGCTCGCACCCAGATCGGCGCTCTCCCGGTGCAGC +
Preference number: 6 (lower is better)
Translates to: AAGLRSHSWPRT*LAPRSALSRCS
Trigger: GCTGCACCGGGAGAGCGCCGATCTGGGTGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAAACCCGCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 72 bp GGCGTCTGGGAGGACTGTGCTTCCGGGCCACCGCTCTaGAAGACAAGGAGAGCCGAGCCGGCACCCACCCGG +
Preference number: 6 (lower is better)
Translates to: GVWEDCASGPPL*KTRRAEPAPTR
Trigger: CCGGGTGGGTGCCGGCTCGGCTCTCCTTGTCTTCCAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 72 bp CTCTCCCGGTGCAGCCGCGATCCGAGCTTCTGGCGCTaGCGTCTGGGAGGACTGTGCTTCCGGGCCACCGCT +
Preference number: 6 (lower is better)
Translates to: LSRCSRDPSFWR*RLGGLCFRATA
Trigger: AGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCACCGGGAGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 72 bp CCTCGCGGTCCAGCAGCGGGTTTGCGGTCCCATTCATaGCCCCGCACCTGCCTCGCACCCAGATCGGCGCTC +
Preference number: 6 (lower is better)
Translates to: PRGPAAGLRSHS*PRTCLAPRSAL
Trigger: GAGCGCCGATCTGGGTGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAAACCCGCTGCTGGACCGCGAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 72 bp GGTGCAGCCGCGATCCGAGCTTCTGGCGCTGGCGTCTaGGAGGACTGTGCTTCCGGGCCACCGCTCTGGAAG +
Preference number: 6 (lower is better)
Translates to: GAAAIRASGAGV*EDCASGPPLWK
Trigger: CTTCCAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATCGCGGCTGCACC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CAA 90 bp TCTCCCCGAGCCTCAGGCAATGTTCCTCGCGGTCCAGCAGCGGGTTaGCGGTCCCATTCATGGCCCCGCACCTGCCTCGCACCCAGATCG +
Preference number: 6 (lower is better)
Translates to: SPRASGNVPRGPAAG*RSHSWPRTCLAPRS
Trigger: CGATCTGGGTGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAAACCCGCTGCTGGACCGCGAGGAACATTGCCTGAGGCTCGGGGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS GCA 72 bp CCTCAGGCAATGTTCCTCGCGGTCCAGCAGCGGGTTTaGGGTCCCATTCATGGCCCCGCACCTGCCTCGCAC +
Preference number: 6 (lower is better)
Translates to: PQAMFLAVQQRV*GPIHGPAPASH
Trigger: GTGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAAACCCGCTGCTGGACCGCGAGGAACATTGCCTGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CAA 72 bp GCCTCAGGCAATGTTCCTCGCGGTCCAGCAGCGGGTTaGCGGTCCCATTCATGGCCCCGCACCTGCCTCGCA +
Preference number: 6 (lower is better)
Translates to: ASGNVPRGPAAG*RSHSWPRTCLA
Trigger: TGCGAGGCAGGTGCGGGGCCATGAATGGGACCGCAAACCCGCTGCTGGACCGCGAGGAACATTGCCTGAGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS GCA 72 bp GATCCGAGCTTCTGGCGCTGGCGTCTGGGAGGACTGTaGTTCCGGGCCACCGCTCTGGAAGACAAGGAGAGC +
Preference number: 6 (lower is better)
Translates to: DPSFWRWRLGGL*FRATALEDKES
Trigger: GCTCTCCTTGTCTTCCAGAGCGGTGGCCCGGAAGCACAGTCCTCCCAGACGCCAGCGCCAGAAGCTCGGATC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 72 bp TTGGGGCCTGGTGGACCATCACCTGGTGTCTGTAGGTaGACCCGGTCTCCCACAGGTGACATCAACCTGAGG +
Preference number: 6 (lower is better)
Translates to: LGPGGPSPGVCR*TRSPTGDINLR
Trigger: CCTCAGGTTGATGTCACCTGTGGGAGACCGGGTCCACCTACAGACACCAGGTGATGGTCCACCAGGCCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000617675.1
CDS CCA 72 bp GGGCAGCCCTGTTCCCTTCGCCTCTACTGCGAGGCCTaGGGAGATGTTGTTTTCATGCTGCTTCCACCATCA +
Preference number: 6 (lower is better)
Translates to: GQPCSLRLYCEA*GDVVFMLLPPS
Trigger: TGATGGTGGAAGCAGCATGAAAACAACATCTCCCCAGGCCTCGCAGTAGAGGCGAAGGGAACAGGGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000617675.1
CDS GCA 72 bp GAGTGGGCTGCTGTTCCATTCGGGCCTGGATTTTACTaGTGCCCTCAGCTCTTGTTTTCTTCACCTGAATGC +
Preference number: 6 (lower is better)
Translates to: EWAAVPFGPGFY*CPQLLFSSPEC
Trigger: GCATTCAGGTGAAGAAAACAAGAGCTGAGGGCAGCAGTAAAATCCAGGCCCGAATGGAACAGCAGCCCACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS GCA 72 bp GAGTGGGCTGCTGTTCCATTCGGGCCTGGATTTTACTaGTGCCCTCAGCTAGGGATATGTGGCAGTGTAATT +
Preference number: 6 (lower is better)
Translates to: EWAAVPFGPGFY*CPQLGICGSVI
Trigger: AATTACACTGCCACATATCCCTAGCTGAGGGCAGCAGTAAAATCCAGGCCCGAATGGAACAGCAGCCCACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000449565.1
CDS TCA 72 bp GCACACAGTCTTTCTGGTAAGGCCGTTTGTTCCCCTTaGACACAGTCATGGGTGGTGTGGATCCAGGGATAT +
Preference number: 6 (lower is better)
Translates to: AHSLSGKAVCSP*TQSWVVWIQGY
Trigger: ATATCCCTGGATCCACACCACCCATGACTGTGTTCAAGGGGAACAAACGGCCTTACCAGAAAGACTGTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS TCA 72 bp GGCAGTGTAATTGTGACTTCATCTCCTTTGCCAACTTaGAGCTCTCCTTCACAGGAAGTGTCTATAGATGCT +
Preference number: 6 (lower is better)
Translates to: GSVIVTSSPLPT*SSPSQEVSIDA
Trigger: AGCATCTATAGACACTTCCTGTGAAGGAGAGCTTCAAGTTGGCAAAGGAGATGAAGTCACAATTACACTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS CCA 72 bp CAGACCTCAAGTAGAAATTGCCCAATTTTTACCAGCTaGAGGGACACCCTTGGGTTTTTGTACGAAGCTATT +
Preference number: 6 (lower is better)
Translates to: QTSSRNCPIFTS*RDTLGFLYEAI
Trigger: AATAGCTTCGTACAAAAACCCAAGGGTGTCCCTCCAGCTGGTAAAAATTGGGCAATTTCTACTTGAGGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000617675.1
CDS CAA 72 bp TGGCAGTGTAATTGTGACTTCATCTCCTTTGCCAACTaGAAGCTCTCCTTCACAGGAAGTGTCTATAGATGC +
Preference number: 6 (lower is better)
Translates to: WQCNCDFISFAN*KLSFTGSVYRC
Trigger: GCATCTATAGACACTTCCTGTGAAGGAGAGCTTCAAGTTGGCAAAGGAGATGAAGTCACAATTACACTGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1
CDS TCA 72 bp CCTCAGCTCTTGTTTTCTTCACCTGAATGCTGCTACTaGGTTTTTCCAGCACATATTCACCAGTGTCATGAT +
Preference number: 6 (lower is better)
Translates to: PQLLFSSPECCY*VFPAHIHQCHD
Trigger: ATCATGACACTGGTGAATATGTGCTGGAAAAACTCAGTAGCAGCATTCAGGTGAAGAAAACAAGAGCTGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396842.7
CDS CCA 72 bp AAATTGCCCAATTTTTACCAGCTGGAGGGACACCCTTaGGTTTTTGTACGAAGCTATTTAATGAGCCTGTGT +
Preference number: 6 (lower is better)
Translates to: KLPNFYQLEGHP*VFVRSYLMSLC
Trigger: ACACAGGCTCATTAAATAGCTTCGTACAAAAACCCAAGGGTGTCCCTCCAGCTGGTAAAAATTGGGCAATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000617675.1
CDS CAA 90 bp AGGGATATGTGGCAGTGTAATTGTGACTTCATCTCCTTTGCCAACTaGAAGCTCTCCTTCACAGGAAGTGTCTATAGATGCTGGTTTAAA +
Preference number: 6 (lower is better)
Translates to: RDMWQCNCDFISFAN*KLSFTGSVYRCWFK
Trigger: TTTAAACCAGCATCTATAGACACTTCCTGTGAAGGAGAGCTTCAAGTTGGCAAAGGAGATGAAGTCACAATTACACTGCCACATATCCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396842.7
ENST00000449565.1