RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DUXB (Homo sapiens)

Ensembl gene IDs: ENSG00000282757

Ensembl transcript IDs: ENST00000633875.4

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp TCCTTGGCTCACATGGAACCTGAAGGGATCCCAAGGAGCCTGGGTTaGAGGAAGAACAGGTGGAAGAGTTTCATGCCCGCTGGAAGAATG +
Preference number: 5 (lower is better)
Translates to: SLAHMEPEGIPRSLG*RKNRWKSFMPAGRM
Trigger: CATTCTTCCAGCGGGCATGAAACTCTTCCACCTGTTCTTCCTTCAACCCAGGCTCCTTGGGATCCCTTCAGGTTCCATGTGAGCCAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CCA 90 bp TTTGGTCCTTGGCTCACATGGAACCTGAAGGGATCCCAAGGAGCCTaGGTTGAAGGAAGAACAGGTGGAAGAGTTTCATGCCCGCTGGAA +
Preference number: 5 (lower is better)
Translates to: FGPWLTWNLKGSQGA*VEGRTGGRVSCPLE
Trigger: TTCCAGCGGGCATGAAACTCTTCCACCTGTTCTTCCTTCAACCCAGGCTCCTTGGGATCCCTTCAGGTTCCATGTGAGCCAAGGACCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS TCA 90 bp GAGGTTGTTGCTCCCTGTGCTCAGGTTCAGGCTGAGAATGGCTCTTaGCCTGTGGTACTCCCGAGCCAGAGTGTTCTTTGTGATTTTGGT +
Preference number: 5 (lower is better)
Translates to: EVVAPCAQVQAENGS*PVVLPSQSVLCDFG
Trigger: ACCAAAATCACAAAGAACACTCTGGCTCGGGAGTACCACAGGTCAAGAGCCATTCTCAGCCTGAACCTGAGCACAGGGAGCAACAACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CCA 90 bp TTGCTCCCTGTGCTCAGGTTCAGGCTGAGAATGGCTCTTGACCTGTaGTACTCCCGAGCCAGAGTGTTCTTTGTGATTTTGGTGTTCTTC +
Preference number: 5 (lower is better)
Translates to: LLPVLRFRLRMALDL*YSRARVFFVILVFF
Trigger: GAAGAACACCAAAATCACAAAGAACACTCTGGCTCGGGAGTACCACAGGTCAAGAGCCATTCTCAGCCTGAACCTGAGCACAGGGAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS TCA 90 bp GAATGGCTCTTGACCTGTGGTACTCCCGAGCCAGAGTGTTCTTTGTaGTTTTGGTGTTCTTCTTGGTATTGGAGCCAGAAGGGAGTCGGA +
Preference number: 5 (lower is better)
Translates to: EWLLTCGTPEPECSL*FWCSSWYWSQKGVG
Trigger: TCCGACTCCCTTCTGGCTCCAATACCAAGAAGAACACCAAAATCACAAAGAACACTCTGGCTCGGGAGTACCACAGGTCAAGAGCCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CCA 90 bp TCTCAGTGTGTCCCTTTGAGAGGGTCCCATTCAGCAAGCAGAGCCTaGCAGATCTCGTCCCACCTTTGCAAAATGTTCGATATGTCAAAC +
Preference number: 5 (lower is better)
Translates to: SQCVPLRGSHSASRA*QISSHLCKMFDMSN
Trigger: GTTTGACATATCGAACATTTTGCAAAGGTGGGACGAGATCTGCCAGGCTCTGCTTGCTGAATGGGACCCTCTCAAAGGGACACACTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS TCA 90 bp TGGCAGATCTCGTCCCACCTTTGCAAAATGTTCGATATGTCAAACTaGCCCAGATTTAGAGGTTGTTGCTCCCTGTGCTCAGGTTCAGGC +
Preference number: 5 (lower is better)
Translates to: WQISSHLCKMFDMSN*PRFRGCCSLCSGSG
Trigger: GCCTGAACCTGAGCACAGGGAGCAACAACCTCTAAATCTGGGTCAGTTTGACATATCGAACATTTTGCAAAGGTGGGACGAGATCTGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 90 bp CTGAGTGTGCCTACTGCTGCCACAAGTCTGTCTCAGTGTGTCCCTTaGAGAGGGTCCCATTCAGCAAGCAGAGCCTGGCAGATCTCGTCC +
Preference number: 6 (lower is better)
Translates to: LSVPTAATSLSQCVP*RGSHSASRAWQISS
Trigger: GGACGAGATCTGCCAGGCTCTGCTTGCTGAATGGGACCCTCTCAAAGGGACACACTGAGACAGACTTGTGGCAGCAGTAGGCACACTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 72 bp CCTACTGCTGCCACAAGTCTGTCTCAGTGTGTCCCTTaGAGAGGGTCCCATTCAGCAAGCAGAGCCTGGCAG +
Preference number: 6 (lower is better)
Translates to: PTAATSLSQCVP*RGSHSASRAWQ
Trigger: CTGCCAGGCTCTGCTTGCTGAATGGGACCCTCTCAAAGGGACACACTGAGACAGACTTGTGGCAGCAGTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS TCA 72 bp GCTCCCTGTGCTCAGGTTCAGGCTGAGAATGGCTCTTaGCCTGTGGTACTCCCGAGCCAGAGTGTTCTTTGT +
Preference number: 6 (lower is better)
Translates to: APCAQVQAENGS*PVVLPSQSVLC
Trigger: ACAAAGAACACTCTGGCTCGGGAGTACCACAGGTCAAGAGCCATTCTCAGCCTGAACCTGAGCACAGGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS TCA 72 bp CTACTGCTGCCACAAGTCTGTCTCAGTGTGTCCCTTTaGGAGGGTCCCATTCAGCAAGCAGAGCCTGGCAGA +
Preference number: 6 (lower is better)
Translates to: LLLPQVCLSVSL*EGPIQQAEPGR
Trigger: TCTGCCAGGCTCTGCTTGCTGAATGGGACCCTCTCAAAGGGACACACTGAGACAGACTTGTGGCAGCAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS TCA 72 bp CACATGGAACCTGAAGGGATCCCAAGGAGCCTGGGTTaGAGGAAGAACAGGTGGAAGAGTTTCATGCCCGCT +
Preference number: 6 (lower is better)
Translates to: HMEPEGIPRSLG*RKNRWKSFMPA
Trigger: AGCGGGCATGAAACTCTTCCACCTGTTCTTCCTTCAACCCAGGCTCCTTGGGATCCCTTCAGGTTCCATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CCA 72 bp TGGCTCACATGGAACCTGAAGGGATCCCAAGGAGCCTaGGTTGAAGGAAGAACAGGTGGAAGAGTTTCATGC +
Preference number: 6 (lower is better)
Translates to: WLTWNLKGSQGA*VEGRTGGRVSC
Trigger: GCATGAAACTCTTCCACCTGTTCTTCCTTCAACCCAGGCTCCTTGGGATCCCTTCAGGTTCCATGTGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CCA 72 bp GTCCCTTTGAGAGGGTCCCATTCAGCAAGCAGAGCCTaGCAGATCTCGTCCCACCTTTGCAAAATGTTCGAT +
Preference number: 6 (lower is better)
Translates to: VPLRGSHSASRA*QISSHLCKMFD
Trigger: ATCGAACATTTTGCAAAGGTGGGACGAGATCTGCCAGGCTCTGCTTGCTGAATGGGACCCTCTCAAAGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 90 bp GCTCTTGACCTGTGGTACTCCCGAGCCAGAGTGTTCTTTGTGATTTaGGTGTTCTTCTTGGTATTGGAGCCAGAAGGGAGTCGGAGTATC +
Preference number: 6 (lower is better)
Translates to: ALDLWYSRARVFFVI*VFFLVLEPEGSRSI
Trigger: GATACTCCGACTCCCTTCTGGCTCCAATACCAAGAAGAACACCAAAATCACAAAGAACACTCTGGCTCGGGAGTACCACAGGTCAAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CCA 72 bp ATAATGAGAGCTGTCTGTGGGGAGGAACAGGTTGATTaGATGCCACCCAACAGTTGCATCTGGTCTCTCATT +
Preference number: 6 (lower is better)
Translates to: IMRAVCGEEQVD*MPPNSCIWSLI
Trigger: AATGAGAGACCAGATGCAACTGTTGGGTGGCATCCAATCAACCTGTTCCTCCCCACAGACAGCTCTCATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 72 bp ATTGGAGCCAGAAGGGAGTCGGAGTATCTAAGTCCTTaGTCAGAATTGGCAGTGTCAGGAGGTGATTCGGAA +
Preference number: 6 (lower is better)
Translates to: IGARRESEYLSP*SELAVSGGDSE
Trigger: TTCCGAATCACCTCCTGACACTGCCAATTCTGACAAAGGACTTAGATACTCCGACTCCCTTCTGGCTCCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 72 bp CTGTGGTACTCCCGAGCCAGAGTGTTCTTTGTGATTTaGGTGTTCTTCTTGGTATTGGAGCCAGAAGGGAGT +
Preference number: 6 (lower is better)
Translates to: LWYSRARVFFVI*VFFLVLEPEGS
Trigger: ACTCCCTTCTGGCTCCAATACCAAGAAGAACACCAAAATCACAAAGAACACTCTGGCTCGGGAGTACCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 90 bp ATTGGAGCCAGAAGGGAGTCGGAGTATCTAAGTCCTTTGTCAGAATaGGCAGTGTCAGGAGGTGATTCGGAATTATCAGAGGCTGATCAG +
Preference number: 6 (lower is better)
Translates to: IGARRESEYLSPLSE*AVSGGDSELSEADQ
Trigger: CTGATCAGCCTCTGATAATTCCGAATCACCTCCTGACACTGCCAATTCTGACAAAGGACTTAGATACTCCGACTCCCTTCTGGCTCCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 90 bp CTTCTTGGTATTGGAGCCAGAAGGGAGTCGGAGTATCTAAGTCCTTaGTCAGAATTGGCAGTGTCAGGAGGTGATTCGGAATTATCAGAG +
Preference number: 6 (lower is better)
Translates to: LLGIGARRESEYLSP*SELAVSGGDSELSE
Trigger: CTCTGATAATTCCGAATCACCTCCTGACACTGCCAATTCTGACAAAGGACTTAGATACTCCGACTCCCTTCTGGCTCCAATACCAAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 72 bp TTGGATGCCACCCAACAGTTGCATCTGGTCTCTCATTaGGGTCGTCTACCAATAAATTCATGGGCTCCATTC +
Preference number: 6 (lower is better)
Translates to: LDATQQLHLVSH*GRLPINSWAPF
Trigger: GAATGGAGCCCATGAATTTATTGGTAGACGACCCAAATGAGAGACCAGATGCAACTGTTGGGTGGCATCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS TCA 72 bp TCGTCCCACCTTTGCAAAATGTTCGATATGTCAAACTaGCCCAGATTTAGAGGTTGTTGCTCCCTGTGCTCA +
Preference number: 6 (lower is better)
Translates to: SSHLCKMFDMSN*PRFRGCCSLCS
Trigger: TGAGCACAGGGAGCAACAACCTCTAAATCTGGGTCAGTTTGACATATCGAACATTTTGCAAAGGTGGGACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000633875.4
CDS CAA 72 bp AGAAGGGAGTCGGAGTATCTAAGTCCTTTGTCAGAATaGGCAGTGTCAGGAGGTGATTCGGAATTATCAGAG +
Preference number: 6 (lower is better)
Translates to: RRESEYLSPLSE*AVSGGDSELSE
Trigger: CTCTGATAATTCCGAATCACCTCCTGACACTGCCAATTCTGACAAAGGACTTAGATACTCCGACTCCCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000633875.4