Pregenerated sensors for DUX4 (Homo sapiens)
Ensembl gene IDs: ENSG00000260596Ensembl transcript IDs: ENST00000564366.1, ENST00000565211.1, ENST00000569241.5, ENST00000570263.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGAGAGGCCAGCGAGCTCCCTTGCACGTCAGCCGGGGTGCGCACTaGGCGCAGGTCTGCTGGTACCTGGGCCGGCTCTGGGATCCCCGG | + |
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Preference number: 1 (lower is better) Translates to: QRGQRAPLHVSRGAH*AQVCWYLGRLWDPR Trigger: CCGGGGATCCCAGAGCCGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGCTCGCTGGCCTCTCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR GCA 90 bp | CGAGCTCCCTTGCACGTCAGCCGGGGTGCGCACTGCGCGCAGGTCTaGTGGTACCTGGGCCGGCTCTGGGATCCCCGGGATGCCCAGGAA | + |
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Preference number: 1 (lower is better) Translates to: RAPLHVSRGAHCAQV*WYLGRLWDPRDAQE Trigger: TTCCTGGGCATCCCGGGGATCCCAGAGCCGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGCTCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR GCA 90 bp | AAGGGCACAGAGAGGCCAGCGAGCTCCCTTGCACGTCAGCCGGGGTaGGCACTGCGCGCAGGTCTGCTGGTACCTGGGCCGGCTCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: KGTERPASSLARQPG*ALRAGLLVPGPALG Trigger: TCCCAGAGCCGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGCTCGCTGGCCTCTCTGTGCCCTT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR CCA 90 bp | GCTCCCTTGCACGTCAGCCGGGGTGCGCACTGCGCGCAGGTCTGCTaGTACCTGGGCCGGCTCTGGGATCCCCGGGATGCCCAGGAAAGA | + |
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Preference number: 1 (lower is better) Translates to: APLHVSRGAHCAQVC*YLGRLWDPRDAQER Trigger: TCTTTCCTGGGCATCCCGGGGATCCCAGAGCCGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR GCA 90 bp | AATTTCACGGAAGAACAAGGGCACAGAGAGGCCAGCGAGCTCCCTTaGACGTCAGCCGGGGTGCGCACTGCGCGCAGGTCTGCTGGTACC | + |
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Preference number: 1 (lower is better) Translates to: NFTEEQGHREASELP*TSAGVRTARRSAGT Trigger: GGTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGCTCGCTGGCCTCTCTGTGCCCTTGTTCTTCCGTGAAATT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR CAA 90 bp | GAATTTCACGGAAGAACAAGGGCACAGAGAGGCCAGCGAGCTCCCTaGCACGTCAGCCGGGGTGCGCACTGCGCGCAGGTCTGCTGGTAC | + |
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Preference number: 2 (lower is better) Translates to: EFHGRTRAQRGQRAP*HVSRGAHCAQVCWY Trigger: GTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGCTCGCTGGCCTCTCTGTGCCCTTGTTCTTCCGTGAAATTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR CCA 72 bp | CACGTCAGCCGGGGTGCGCACTGCGCGCAGGTCTGCTaGTACCTGGGCCGGCTCTGGGATCCCCGGGATGCC | + |
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Preference number: 3 (lower is better) Translates to: HVSRGAHCAQVC*YLGRLWDPRDA Trigger: GGCATCCCGGGGATCCCAGAGCCGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGCTGACGTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR GCA 72 bp | GAGAGGCCAGCGAGCTCCCTTGCACGTCAGCCGGGGTaGGCACTGCGCGCAGGTCTGCTGGTACCTGGGCCG | + |
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Preference number: 3 (lower is better) Translates to: ERPASSLARQPG*ALRAGLLVPGP Trigger: CGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGCTCGCTGGCCTCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR CCA 72 bp | GCCGGGGTGCGCACTGCGCGCAGGTCTGCTGGTACCTaGGCCGGCTCTGGGATCCCCGGGATGCCCAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: AGVRTARRSAGT*AGSGIPGMPRK Trigger: TTTCCTGGGCATCCCGGGGATCCCAGAGCCGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCACCCCGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR GCA 72 bp | GAAGAACAAGGGCACAGAGAGGCCAGCGAGCTCCCTTaGACGTCAGCCGGGGTGCGCACTGCGCGCAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: EEQGHREASELP*TSAGVRTARRS Trigger: AGACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGCTCGCTGGCCTCTCTGTGCCCTTGTTCTTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| CDS-3UTR CCA 90 bp | GGTGCGCACTGCGCGCAGGTCTGCTGGTACCTGGGCCGGCTCTGGGATCCCCGGGACAGCGTCGGAAGGTaGGGGGAGACATTCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: GAHCAQVCWYLGRLWDPRDSVGR*GETFSQ Trigger: CTGGCTGAATGTCTCCCCCCACCTTCCGACGCTGTC...CCGGGGATCCCAGAGCCGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCACC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| CDS-3UTR CCA 90 bp | GTGCGCACTGCGCGCAGGTCTGCTGGTACCTGGGCCGGCTCTGGGATCCCCGGGGACAGCGTCGGAAGGTaGGGGGAGACATTCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: VRTARRSAGTWAGSGIPGDSVGR*GETFSQ Trigger: CTGGCTGAATGTCTCCCCCCACCTTCCGACGCTGTC...CCCGGGGATCCCAGAGCCGGCCCAGGTACCAGCAGACCTGCGCGCAGTGCGCAC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| 3UTR CAA 72 bp | GGAAGAACAAGGGCACAGAGAGGCCAGCGAGCTCCCTaGCACGTCAGCCGGGGTGCGCACTGCGCGCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GRTRAQRGQRAP*HVSRGAHCAQV Trigger: GACCTGCGCGCAGTGCGCACCCCGGCTGACGTGCAAGGGAGCTCGCTGGCCTCTCTGTGCCCTTGTTCTTCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| CDS-3UTR CCA 90 bp | AAGAACAAGGGCACAGAGAGGCCAGCGAGCTCCCTTGCACGTCAGCCGGGGTGCGACAGCGTCGGAAGGTaGGGGGAGACATTCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: KNKGTERPASSLARQPGCDSVGR*GETFSQ Trigger: CTGGCTGAATGTCTCCCCCCACCTTCCGACGCTGTC...GCACCCCGGCTGACGTGCAAGGGAGCTCGCTGGCCTCTCTGTGCCCTTGTTCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000565211.1 ENST00000569241.5 ENST00000570263.5 |
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| CDS GCA 72 bp | AAACATGTCTTAATAGCCCTCGCCATTGTGACATATTaGAGGAAACAAAATCCAGGTGATGTAACTCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: KHVLIALAIVTY*RKQNPGDVTLV Trigger: AACAAGAGTTACATCACCTGGATTTTGTTTCCTGCAATATGTCACAATGGCGAGGGCTATTAAGACATGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564366.1 |
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