RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DUSP6 (Homo sapiens)

Ensembl gene IDs: ENSG00000139318

Ensembl transcript IDs: ENST00000279488.8, ENST00000308385.6, ENST00000547140.1, ENST00000547291.1, ENST00000548755.1

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTaGATGGGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCC +
Preference number: 1 (lower is better)
Translates to: FGSTLCAWKSSNPSP*MGRLYTWVQSKPTA
Trigger: GGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 90 bp GTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATaGGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCCTGTA +
Preference number: 1 (lower is better)
Translates to: VLPYAPGSPRIPVPA*VGCTHGYRANLLPV
Trigger: TACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR TCA 90 bp TGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTaGTGCTGCCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGC +
Preference number: 1 (lower is better)
Translates to: CHFDTWGHTQRKQPS*CCQEKLLKGQTHSS
Trigger: GCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
3UTR CCA 90 bp AGAACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTaGAAGTCCTCGAATCCCAGTCCCTGCATGGGTAGGCTGTACACA +
Preference number: 1 (lower is better)
Translates to: RTHAPTLSFGSTLCA*KSSNPSPCMGRLYT
Trigger: TGTGTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 90 bp CAGCCTTACAAGGCCCTAAAGAACACATGCTCCTACCCTATCATTTaGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTG +
Preference number: 1 (lower is better)
Translates to: QPYKALKNTCSYPII*FYPMRLEVLESQSL
Trigger: CAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTGTAAGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 90 bp TGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTAGGCTGTACACATaGGTACAGAGCAAACCTACTGCCTGTATCTATACAGCATGTCCT +
Preference number: 1 (lower is better)
Translates to: WKSSNPSPCMGRLYT*VQSKPTACIYTACP
Trigger: AGGACATGCTGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 90 bp TTTAACTCTCCCTTCTTCACAATCAAATGCATTTCTCTTATCAAATaGGTACCCATGCTCACACACACACACTTCCAGTTTTATACAAAT +
Preference number: 1 (lower is better)
Translates to: FNSPFFTIKCISLIK*VPMLTHTHFQFYTN
Trigger: ATTTGTATAAAACTGGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGATTGTGAAGAAGGGAGAGTTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR TCA 90 bp ACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTAGGCTGTACAGAAAGCAGCCCAGCTaGTGCTGCCAAGAGAAACTG +
Preference number: 2 (lower is better)
Translates to: TLCAWKSSNPSPCMGRLYRKQPS*CCQEKL
Trigger: CAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCT...GTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR-3UTR CCA 90 bp AGAACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCATCCCAGTCCCTGCATaGGTAGGCTGTACACATGGG +
Preference number: 2 (lower is better)
Translates to: RTHAPTLSFGSTLCAWKSIPVPA*VGCTHG
Trigger: CCCATGTGTACAGCCTACCCATGCAGGGACTGGGAT...GGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CAA 90 bp ACAGCCTTACAAGGCCCTAAAGAACACATGCTCCTACCCTATCATTaGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCT +
Preference number: 2 (lower is better)
Translates to: TALQGPKEHMLLPYH*VLPYAPGSPRIPVP
Trigger: AGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTGTAAGGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR-3UTR TCA 90 bp ACATGTGGCTGTCATCTTGGTATTCTGCTACACCTCTCTGTGGTTAATATCCAACAGCTGGTGTCATTTTaGCACCTGGGGCCACACACA +
Preference number: 2 (lower is better)
Translates to: TCGCHLGILLHLSVVNIQQLVSF*HLGPHT
Trigger: TGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTG...TTGGATATTAACCACAGAGAGGTGTAGCAGAATACCAAGATGACAGCCACATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR CCA 90 bp GGAAGCTTAGATATGCCTTGCCATGCGCATGCTAGGGGAAAAAGTGGAGACATCTGTCATTTTGACACCTaGGGCCACACACAAAGAAAG +
Preference number: 2 (lower is better)
Translates to: GSLDMPCHAHARGKSGDICHFDT*GHTQRK
Trigger: CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACA...GATGTCTCCACTTTTTCCCCTAGCATGCGCATGGCAAGGCATATCTAAGCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR CCA 90 bp CATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATTCTAGTACAGACAGCTaGTGTCATTTTGACACCTGG +
Preference number: 2 (lower is better)
Translates to: HAPTLSFGSTLCAWKSSNSSTDS*CHFDTW
Trigger: CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA...ATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR-3UTR GCA 90 bp ATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCACAGAGCAAACCTACTaGCTGTATCTATACAGCATG +
Preference number: 2 (lower is better)
Translates to: MLLPYHLVLPYAPGSPRITEQTY*LYLYSM
Trigger: CATGCTGTATAGATACAGGCAGTAGGTTTGCTCTGT...GATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR-3UTR CCA 90 bp ACATGTGGCTGTCATCTTGGTATTCTGCTACACCTCTCTGTGGTTAATATCCAATCTACCCTATGCGCCTaGAAGTCCTCGAATCCCAGT +
Preference number: 2 (lower is better)
Translates to: TCGCHLGILLHLSVVNIQSTLCA*KSSNPS
Trigger: ACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGA...TTGGATATTAACCACAGAGAGGTGTAGCAGAATACCAAGATGACAGCCACATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR GCA 90 bp AGTCGGTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATATCGAATCCCAGTCCCTaGATGGGTAGGCTGTACACA +
Preference number: 2 (lower is better)
Translates to: SRSILGCHLYSWQTMNFISNPSP*MGRLYT
Trigger: TGTGTACAGCCTACCCATGCAGGGACTGGGATTCGA...TATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGACCGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR CCA 90 bp TCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACTTCCTCCTACCCTATCATTTaGTTCTACCCTATGCGCCTG +
Preference number: 2 (lower is better)
Translates to: SNAFLLSNGYPCSHTHTSSYPII*FYPMRL
Trigger: CAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGA...GGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR GCA 90 bp AGTCGGTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATAGCCCTAAAGAACACATaGTCCTACCCTATCATTTGG +
Preference number: 2 (lower is better)
Translates to: SRSILGCHLYSWQTMNFIALKNT*SYPIIW
Trigger: CCAAATGATAGGGTAGGAGCATGTGTTCTTTAGGGC...TATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGACCGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR TCA 90 bp GTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATAAACTGCCACAAATACAGAGCTaGAATCTCTCTTTGGCTCCT +
Preference number: 2 (lower is better)
Translates to: VHSRMSSLFVANDEFHKLPQIQS*NLSLAP
Trigger: AGGAGCCAAAGAGAGATTTCAGCTCTGTATTTGTGG...CAGTTTATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR GCA 90 bp GTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATAAACTGCCAGATTATCCCCTTTaGGACAACACAAGCAAAAAT +
Preference number: 2 (lower is better)
Translates to: VHSRMSSLFVANDEFHKLPDYPL*DNTSKN
Trigger: ATTTTTGCTTGTGTTGTCGCAAAGGGGATAATCTGG...CAGTTTATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR TCA 72 bp GACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTaGTGCTGCCAAGAGAAACTGCTGAAGGGCCAGACA +
Preference number: 3 (lower is better)
Translates to: DTWGHTQRKQPS*CCQEKLLKGQT
Trigger: TGTCTGGCCCTTCAGCAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
3UTR GCA 72 bp ACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTaGATGGGTAGGCTGTACACATGGGTACAGAGCAAA +
Preference number: 3 (lower is better)
Translates to: TLCAWKSSNPSP*MGRLYTWVQSK
Trigger: TTTGCTCTGTACCCATGTGTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 72 bp GCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTaGAAGTCCTCGAATCCCAGTCCCTGCATGGGTAGG +
Preference number: 3 (lower is better)
Translates to: APTLSFGSTLCA*KSSNPSPCMGR
Trigger: CCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 72 bp TATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATaGGTAGGCTGTACACATGGGTACAGAGCAAACCTA +
Preference number: 3 (lower is better)
Translates to: YAPGSPRIPVPA*VGCTHGYRANL
Trigger: TAGGTTTGCTCTGTACCCATGTGTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR GCA 72 bp ACACATGCTCCTACCCTATCATTTGGTTCTACCCTATaGGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATG +
Preference number: 3 (lower is better)
Translates to: THAPTLSFGSTL*AWKSSNPSPCM
Trigger: CATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 72 bp TCGAATCCCAGTCCCTGCATGGGTAGGCTGTACACATaGGTACAGAGCAAACCTACTGCCTGTATCTATACA +
Preference number: 3 (lower is better)
Translates to: SNPSPCMGRLYT*VQSKPTACIYT
Trigger: TGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACCCATGCAGGGACTGGGATTCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 72 bp AAGGCCCTAAAGAACACATGCTCCTACCCTATCATTTaGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCC +
Preference number: 3 (lower is better)
Translates to: KALKNTCSYPII*FYPMRLEVLES
Trigger: GGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCTTTAGGGCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR-3UTR CAA 90 bp GGAAGCTTAGATATGCCTTGCCATGCGCATGCTAGGGGAAAAAGTGGAGACATCTATCTGCAGGTAGAATaGCCCATGACAACAGACTGG +
Preference number: 3 (lower is better)
Translates to: GSLDMPCHAHARGKSGDIYLQVE*PMTTDW
Trigger: CCAGTCTGTTGTCATGGGCAATTCTACCTGCAGATA...GATGTCTCCACTTTTTCCCCTAGCATGCGCATGGCAAGGCATATCTAAGCTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR CCA 72 bp ATTCCGCACTTGGTAACCTTGTCTAGTACAGACAGCTaGTGTCATTTTGACACCTGGGGCCACACACAAAGA +
Preference number: 3 (lower is better)
Translates to: IPHLVTLSSTDS*CHFDTWGHTQR
Trigger: TCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
3UTR-3UTR CAA 90 bp GGAAGCTTAGATATGCCTTGCCATGCGCATGCTAGGGGAAAAAGTGGAGACATCCCCAGATTATCCCCTTaGCGACAACACAAGCAAAAA +
Preference number: 3 (lower is better)
Translates to: GSLDMPCHAHARGKSGDIPRLSP*RQHKQK
Trigger: TTTTTGCTTGTGTTGTCGCAAAGGGGATAATCTGGG...GATGTCTCCACTTTTTCCCCTAGCATGCGCATGGCAAGGCATATCTAAGCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR CAA 90 bp TCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACTTCCCCGCACTTGGTAACCTaGTCTAGTACAGACAGCTGG +
Preference number: 3 (lower is better)
Translates to: SNAFLLSNGYPCSHTHTSPHLVT*SSTDSW
Trigger: CCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG...GGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR GCA 72 bp AAAAGGAAACAGCCTTACAAGGCCCTAAAGAACACATaGTCCTACCCTATCATTTGGTTCTACCCTATGCGC +
Preference number: 3 (lower is better)
Translates to: KRKQPYKALKNT*SYPIIWFYPMR
Trigger: GCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTGTAAGGCTGTTTCCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CCA 72 bp GTGGCTGTCATCTTGGTATTCTGCTACACCTCTCTGTaGTTAATATCCAAATTGTATTCCTCAGCAAGCTAT +
Preference number: 3 (lower is better)
Translates to: VAVILVFCYTSL*LISKLYSSASY
Trigger: ATAGCTTGCTGAGGAATACAATTTGGATATTAACCACAGAGAGGTGTAGCAGAATACCAAGATGACAGCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR CCA 72 bp GGATATCTGCAGGTAGAATTGCCCATGACAACAGACTaGAAAAAGAATTATCCCTACTTCCTCTTTGGCATT +
Preference number: 3 (lower is better)
Translates to: GYLQVELPMTTD*KKNYPYFLFGI
Trigger: AATGCCAAAGAGGAAGTAGGGATAATTCTTTTTCCAGTCTGTTGTCATGGGCAATTCTACCTGCAGATATCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR-3UTR CAA 90 bp AGTCGGTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATAAAGCTTAAAAGAACCTaGCCCTACTATGCCTACAAG +
Preference number: 3 (lower is better)
Translates to: SRSILGCHLYSWQTMNFIKLKRT*PYYAYK
Trigger: CTTGTAGGCATAGTAGGGCAAGGTTCTTTTAAGCTT...TATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGACCGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR GCA 72 bp CAATCAAATGCATTTCTCTTATCAAATGGGTACCCATaGTCACACACACACACTTCCAGTTTTATACAAATT +
Preference number: 3 (lower is better)
Translates to: QSNAFLLSNGYP*SHTHTSSFIQI
Trigger: AATTTGTATAAAACTGGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGATTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp ACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTAGGCTGTACCACCGCGCGCGAAGCTaGCGCTCTCGGAGCGGGGTT +
Preference number: 4 (lower is better)
Translates to: TLCAWKSSNPSPCMGRLYHRARS*RSRSGV
Trigger: AACCCCGCTCCGAGAGCGGCAGCTTCGCGCGCGGTG...GTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp ACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGGGTCCTCGCCGCGCGTaGAGAGCGCGCGCACCGGCA +
Preference number: 4 (lower is better)
Translates to: THAPTLSFGSTLCAWKSSGPRRA*RARAPA
Trigger: TGCCGGTGCGCGCGCTCTTCACGCGCGGCGAGGACC...CGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCGGTCCTCGCCGCGCGTaGAGAGCGCGCGCACCGGCA +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSGPRRA*RARAPA
Trigger: TGCCGGTGCGCGCGCTCTTCACGCGCGGCGAGGACC...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTTGCCACAGCGCCGGGTaGAGCGGTCCCGGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPACHSAG*SGPGPR
Trigger: GCGAGGACCGGGACCGCTTCACCCGGCGCTGTGGCA...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp ATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCTGCCACAGCGCCGGGTaGAGCGGTCCCGGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: MLLPYHLVLPYAPGSPRICHSAG*SGPGPR
Trigger: GCGAGGACCGGGACCGCTTCACCCGGCGCTGTGGCA...GATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp CATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCGGGAGAGGGCGGGGTaGCTACCAGACGCCCCTCGG +
Preference number: 4 (lower is better)
Translates to: HAPTLSFGSTLCAWKSSNRERAG*LPDAPR
Trigger: CCGAGGGGCGTCTGGTAGGCACCCCGCCCTCTCCCG...ATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCCGAGCCCCAGCACTaGCAACGGCGGCGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSPEPQH*QRRRAA
Trigger: AGCAGCTCGCCGCCGTTGCCAGTGCTGGGGCTCGGG...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR GCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGCCGGAGGTTCTCTCTaGACCCAGCTGCAGCCGCTG +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPAAGGSL*TQLQPL
Trigger: CAGCGGCTGCAGCTGGGTGCAGAGAGAACCTCCGGC...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp AGAACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCCACCGCGCGCGAAGCTaGCGCTCTCGGAGCGGGGTT +
Preference number: 4 (lower is better)
Translates to: RTHAPTLSFGSTLCAWKSHRARS*RSRSGV
Trigger: AACCCCGCTCCGAGAGCGGCAGCTTCGCGCGCGGTG...GGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp TTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTTTGCCCAGCTCCAGCTaGTCGTTGAGCCACGCCACC +
Preference number: 4 (lower is better)
Translates to: FGSTLCAWKSSNPSPCMGLPSSS*SLSHAT
Trigger: GGTGGCGTGGCTCAACGAGCAGCTGGAGCTGGGCAA...ACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp ACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTAGGCTGTACCGTTCCAGTCGCTGCTaGTCTCGTCGTAGAGCACCA +
Preference number: 4 (lower is better)
Translates to: TLCAWKSSNPSPCMGRLYRSSRC*SRRRAP
Trigger: TGGTGCTCTACGACGAGAGCAGCAGCGACTGGAACG...GTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCGAGCCCCAGCACTaGCAACGGCGGCGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQPEPQH*QRRRAA
Trigger: AGCAGCTCGCCGCCGTTGCCAGTGCTGGGGCTCGGG...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR TCA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGACGCCACCGTCTTGCTaGTCGCCATTTCCGACGCGA +
Preference number: 4 (lower is better)
Translates to: ILTPGATHKESSPADAAKTPPSC*SPFPTR
Trigger: TCGCGTCGGAAATGGCGATCAGCAAGACGGTGGCGT...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp ACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAGCTCCAGCTGCTCGTTaGGCCACGCCACCGTCTTGC +
Preference number: 4 (lower is better)
Translates to: TLSSTDSWCHFDTWGHTQAPAAR*ATPPSC
Trigger: GCAAGACGGTGGCGTGGCTCAACGAGCAGCTGGAGC...TTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTCAGCTGGTGTCATTTTaGCACCTGGGGCCACACACA +
Preference number: 4 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGQLVSF*HLGPHT
Trigger: TGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTG...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR TCA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACAAGGAAGAGTCAGAGCTaGTCCGCAGGCCCCCGAGCC +
Preference number: 4 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTRKSQS*SAGPRA
Trigger: GGCTCGGGGGCCTGCGGATCAGCTCTGACTCTTCCT...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR TCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCAGGAAGAGTCAGAGCTaGTCCGCAGGCCCCCGAGCC +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGRKSQS*SAGPRA
Trigger: GGCTCGGGGGCCTGCGGATCAGCTCTGACTCTTCCT...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CCA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGGCCGAGGCTAGCGGTTaGGGCAGACGAGACAGAAGT +
Preference number: 4 (lower is better)
Translates to: ILTPGATHKESSPADAAKAEASG*GRRDRS
Trigger: ACTTCTGTCTCGTCTGCCCCAACCGCTAGCCTCGGC...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp GGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCGAGGCTAGCGGTTaGGGCAGACGAGACAGAAGT +
Preference number: 4 (lower is better)
Translates to: GVILTPGATHKESSPADAAEASG*GRRDRS
Trigger: ACTTCTGTCTCGTCTGCCCCAACCGCTAGCCTCGGC...AGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp TCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACTTCCCGGGAGAGGGCGGGGTaGCTACCAGACGCCCCTCGG +
Preference number: 4 (lower is better)
Translates to: SNAFLLSNGYPCSHTHTSRERAG*LPDAPR
Trigger: CCGAGGGGCGTCTGGTAGGCACCCCGCCCTCTCCCG...GGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGCAACGGCGGCGAGCTaGTGCTACACGAGCCGTCTA +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWATAAS*CYTSRL
Trigger: TAGACGGCTCGTGTAGCAGCAGCTCGCCGCCGTTGC...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR GCA 90 bp ACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAGCAACGGCGGCGAGCTaGTGCTACACGAGCCGTCTA +
Preference number: 4 (lower is better)
Translates to: TLSSTDSWCHFDTWGHTQATAAS*CYTSRL
Trigger: TAGACGGCTCGTGTAGCAGCAGCTCGCCGCCGTTGC...TTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CCA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTTCTACCCTATGCGCCTaGAAGTCCTCGAATCCCAGT +
Preference number: 4 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGSTLCA*KSSNPS
Trigger: ACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGA...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTACACGTCCAAGTTGGTaGAGTCTTTGGCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGTRPSW*SLWHSP
Trigger: TGGGCTGTGCCAAAGACTCCACCAACTTGGACGTGT...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR TCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTCACAGTCACAGTGACTaGGCGGCTAATGCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPAHSHSD*AANASQ
Trigger: TTGGCTGGCATTAGCCGCTCAGTCACTGTGACTGTG...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR TCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGTGTCACATGGGCTGCTaGGTCCCAGCGTCCTCTCGA +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWCHMGC*VPASSR
Trigger: TCGAGAGGACGCTGGGACTCAGCAGCCCATGTGACA...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR TCA 90 bp TTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTAGAAAGCAGCCCAGCTaGTGCTGCCAAGAGAAACTG +
Preference number: 4 (lower is better)
Translates to: FGSTLCAWKSSNPSPCMGRKQPS*CCQEKL
Trigger: CAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCT...ACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTCGGCTTGGAACTTACTaGAGCCACCTGCCAGAACGA +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPARLGTY*SHLPER
Trigger: TCGTTCTGGCAGGTGGCTTCAGTAAGTTCCAAGCCG...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000547291.1
CDS-3UTR GCA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGTTGCCCAGCTCCAGCTaGTCGTTGAGCCACGCCACC +
Preference number: 4 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKLPSSS*SLSHAT
Trigger: GGTGGCGTGGCTCAACGAGCAGCTGGAGCTGGGCAA...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCACGGCGGCGAGCTGCTaGTACACGAGCCGTCTAGAT +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGTAASC*YTSRLD
Trigger: ATCTAGACGGCTCGTGTAGCAGCAGCTCGCCGCCGT...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR GCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGACGGCGGCGAGCTGCTaGTACACGAGCCGTCTAGAT +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWTAASC*YTSRLD
Trigger: ATCTAGACGGCTCGTGTAGCAGCAGCTCGCCGCCGT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CCA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGATCCCAGTCCCTGCATaGGTAGGCTGTACACATGGG +
Preference number: 4 (lower is better)
Translates to: ILTPGATHKESSPADAAKIPVPA*VGCTHG
Trigger: CCCATGTGTACAGCCTACCCATGCAGGGACTGGGAT...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp TTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTTCTACCCTATGCGCCTaGAAGTCCTCGAATCCCAGT +
Preference number: 4 (lower is better)
Translates to: FGSTLCAWKSSNPSPCMGSTLCA*KSSNPS
Trigger: ACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGA...ACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCAGCTGGTGTCATTTTaGCACCTGGGGCCACACACA +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSQLVSF*HLGPHT
Trigger: TGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTG...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR GCA 90 bp GGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCCTGTATCTATACAGCAGACTCGTATAGCTCCTaGGGCCGGCAGTCCATCAGC +
Preference number: 4 (lower is better)
Translates to: GRLYTWVQSKPTACIYTADSYSS*GRQSIS
Trigger: GCTGATGGACTGCCGGCCGCAGGAGCTATACGAGTC...TGCTGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGGGCAGGTTACCCTTCTaGAGGCGCCGCAGCATGATG +
Preference number: 4 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKGRLPF*RRRSMM
Trigger: CATCATGCTGCGGCGCCTGCAGAAGGGTAACCTGCC...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCGTTCCAGTCGCTGCTaGTCTCGTCGTAGAGCACCA +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQRSSRC*SRRRAP
Trigger: TGGTGCTCTACGACGAGAGCAGCAGCGACTGGAACG...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp GGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTAGATTGGTCTCGCAATaGAGGGAGAACTCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: GVILTPGATHKESSPADARLVSQ*RENSAW
Trigger: CCAAGCCGAGTTCTCCCTGCATTGCGAGACCAATCT...AGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CCA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGCAGCAAGGAGGGGTGTaGGGTCTTTCACGTAGATTG +
Preference number: 4 (lower is better)
Translates to: ILTPGATHKESSPADAAKQQGGV*GLSRRL
Trigger: CAATCTACGTGAAAGACCCCACACCCCTCCTTGCTG...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp GGAAGCTTAGATATGCCTTGCCATGCGCATGCTAGGGGAAAAAGTGGAGACATCAGGAAGGCTGGCTGTTaGACAGCGGACTACCATCCG +
Preference number: 4 (lower is better)
Translates to: GSLDMPCHAHARGKSGDIRKAGC*TADYHP
Trigger: CGGATGGTAGTCCGCTGTCCAACAGCCAGCCTTCCT...GATGTCTCCACTTTTTCCCCTAGCATGCGCATGGCAAGGCATATCTAAGCTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp ACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGGAAGGCTGGCTGTTaGACAGCGGACTACCATCCG +
Preference number: 4 (lower is better)
Translates to: TLSSTDSWCHFDTWGHTQRKAGC*TADYHP
Trigger: CGGATGGTAGTCCGCTGTCCAACAGCCAGCCTTCCT...TTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCACTGGGAAGGAAGGCTaGCTGTTGGACAGCGGACTA +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSTGKEG*LLDSGL
Trigger: TAGTCCGCTGTCCAACAGCCAGCCTTCCTTCCCAGT...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR TCA 90 bp ACATGTGGCTGTCATCTTGGTATTCTGCTACACCTCTCTGTGGTTAATATCCAAGCTCCAGCTGCTCGTTaGGCCACGCCACCGTCTTGC +
Preference number: 4 (lower is better)
Translates to: TCGCHLGILLHLSVVNIQAPAAR*ATPPSC
Trigger: GCAAGACGGTGGCGTGGCTCAACGAGCAGCTGGAGC...TTGGATATTAACCACAGAGAGGTGTAGCAGAATACCAAGATGACAGCCACATGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACAGTCACAGTGACTaGGCGGCTAATGCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGHSHSD*AANASQ
Trigger: TTGGCTGGCATTAGCCGCTCAGTCACTGTGACTGTG...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR GCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGATGGCCGACTCGATGTaGGACGACTCGTATAGCTCC +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQMADSM*DDSYSS
Trigger: GGAGCTATACGAGTCGTCGCACATCGAGTCGGCCAT...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGTCTCGTTCCAGTCGCTaGTGCTCTCGTCGTAGAGCA +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQSRSSR*CSRRRA
Trigger: TGCTCTACGACGAGAGCAGCAGCGACTGGAACGAGA...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTGTCTTTCACGTAGATTaGAGAGAGTCCACCTGGTAT +
Preference number: 4 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGVFHVD*RESTWY
Trigger: ATACCAGGTGGACTCTCTGCAATCTACGTGAAAGAC...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR GCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCTCGAATCCCAGTCCCTaGATGGGTAGGCTGTACACA +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSSNPSP*MGRLYT
Trigger: TGTGTACAGCCTACCCATGCAGGGACTGGGATTCGA...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTGCCCTAAAGAACACATaGTCCTACCCTATCATTTGG +
Preference number: 4 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGALKNT*SYPIIW
Trigger: CCAAATGATAGGGTAGGAGCATGTGTTCTTTAGGGC...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCAGATTGGTCTCGCAATaGAGGGAGAACTCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSRLVSQ*RENSAW
Trigger: CCAAGCCGAGTTCTCCCTGCATTGCGAGACCAATCT...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR GCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCACCATCCGAGTCTGTTaGACTATTGGGGTCTCGGTC +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSTIRVC*TIGVSV
Trigger: GACCGAGACCCCAATAGTGCAACAGACTCGGATGGT...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR GCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTAGCTTAGATATGCCTTaGCATGCGCATGCTAGGGGA +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPASLDMP*HAHARG
Trigger: TCCCCTAGCATGCGCATGGCAAGGCATATCTAAGCT...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCCAGCTGCAGCCGCTaGCTCTTAGTGTCAATGAAT +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSPSCSR*LLVSMN
Trigger: ATTCATTGACACTAAGAGCCAGCGGCTGCAGCTGGG...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTATACAGCTGCTGTGCTaGAACCCTGTTGTCACATGG +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPAIQLLC*NPVVTW
Trigger: CCATGTGACAACAGGGTTCCAGCACAGCAGCTGTAT...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTTGTCATTTTGACACCTaGGGCCACACACAAAGAAAG +
Preference number: 4 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGCHFDT*GHTQRK
Trigger: CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACA...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTAGTCTGTTGCACTATTaGGGTCTCGGTCAAGGTCAG +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPASLLHY*GLGQGQ
Trigger: CTGACCTTGACCGAGACCCCAATAGTGCAACAGACT...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCACTGGGAAGGAAGGCTaGCTGTTGGACAGCGGACTA +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGTGKEG*LLDSGL
Trigger: TAGTCCGCTGTCCAACAGCCAGCCTTCCTTCCCAGT...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR TCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCAGAAAGCAGCCCAGCTaGTGCTGCCAAGAGAAACTG +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGRKQPS*CCQEKL
Trigger: CAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCT...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR TCA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACAAGAAAGCAGCCCAGCTaGTGCTGCCAAGAGAAACTG +
Preference number: 4 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTRKQPS*CCQEKL
Trigger: CAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCT...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR TCA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCTGGTGTCATTTTaGCACCTGGGGCCACACACA +
Preference number: 4 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKQLVSF*HLGPHT
Trigger: TGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTG...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR TCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCGGCTTGGAACTTACTaGAGCCACCTTCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQRLGTY*SHLPGR
Trigger: TCTACCTGGAAGGTGGCTTCAGTAAGTTCCAAGCCG...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACCCGGGCTTCATCTATaGAAGAAATGGCCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTPGLHL*KKWPQG
Trigger: TCCCTGAGGCCATTTCTTTCATAGATGAAGCCCGGG...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR GCA 90 bp ATGCAAAAGGAAACAGCCTTACAAGGCCCTAAAGAACACATGCTCCTACCCTATGACTCGTATAGCTCCTaGGGCCGGCAGTCCATCAGC +
Preference number: 4 (lower is better)
Translates to: MQKETALQGPKEHMLLPYDSYSS*GRQSIS
Trigger: GCTGATGGACTGCCGGCCGCAGGAGCTATACGAGTC...ATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTGTAAGGCTGTTTCCTTTTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGTCGAATCCCAGTCCCTaGATGGGTAGGCTGTACACA +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWSNPSP*MGRLYT
Trigger: TGTGTACAGCCTACCCATGCAGGGACTGGGATTCGA...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp TTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTGCCCTAAAGAACACATaGTCCTACCCTATCATTTGG +
Preference number: 4 (lower is better)
Translates to: FGSTLCAWKSSNPSPCMGALKNT*SYPIIW
Trigger: CCAAATGATAGGGTAGGAGCATGTGTTCTTTAGGGC...ACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp ACAATCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACGCCTCGCACACCCCCTaGGCGAGGCAGCTCCTCAAT +
Preference number: 4 (lower is better)
Translates to: TIKCISLIKWVPMLTHTHASHTP*ARQLLN
Trigger: ATTGAGGAGCTGCCTCGCGCAGGGGGTGTGCGAGGC...GTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGATTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCACCATCCGAGTCTGTTaGACTATTGGGGTCTCGGTC +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGTIRVC*TIGVSV
Trigger: GACCGAGACCCCAATAGTGCAACAGACTCGGATGGT...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCCCAGCTGCAGCCGCTaGCTCTTAGTGTCAATGAAT +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGPSCSR*LLVSMN
Trigger: ATTCATTGACACTAAGAGCCAGCGGCTGCAGCTGGG...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCATACAGCTGCTGTGCTaGAACCCTGTTGTCACATGG +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSIQLLC*NPVVTW
Trigger: CCATGTGACAACAGGGTTCCAGCACAGCAGCTGTAT...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCAGCAAGGAGGGGTGTaGGGTCTTTCACGTAGATTG +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQQQGGV*GLSRRL
Trigger: CAATCTACGTGAAAGACCCCACACCCCTCCTTGCTG...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGACGAGCCGTCTAGATTaGTCTCGCAATGCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWTSRLD*SRNAGR
Trigger: TCTCCCTGCATTGCGAGACCAATCTAGACGGCTCGT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR TCA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGCCACAAATACAGAGCTaGAATCTCTCTTTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: ILTPGATHKESSPADAAKPQIQS*NLSLAP
Trigger: AGGAGCCAAAGAGAGATTTCAGCTCTGTATTTGTGG...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp ACATGTGGCTGTCATCTTGGTATTCTGCTACACCTCTCTGTGGTTAATATCCAAGGCAGGTTACCCTTCTaGAGGCGCCGCAGCATGATG +
Preference number: 4 (lower is better)
Translates to: TCGCHLGILLHLSVVNIQGRLPF*RRRSMM
Trigger: CATCATGCTGCGGCGCCTGCAGAAGGGTAACCTGCC...TTGGATATTAACCACAGAGAGGTGTAGCAGAATACCAAGATGACAGCCACATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp GGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTAAAATACAGCTGCTGTaGTGGAACCCTGTTGTCACA +
Preference number: 4 (lower is better)
Translates to: GVILTPGATHKESSPADAKIQLL*WNPVVT
Trigger: TGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTT...AGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR GCA 90 bp ACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGGTGGTAAAATACAGCTaGTGTGCTGGAACCCTGTTG +
Preference number: 4 (lower is better)
Translates to: THAPTLSFGSTLCAWKSSVVKYS*CAGTLL
Trigger: CAACAGGGTTCCAGCACAGCAGCTGTATTTTACCAC...CGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTTCCGAGATGGGGATTTaGTTGTATTTAAACTCTCCT +
Preference number: 4 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGSEMGI*LYLNSP
Trigger: AGGAGAGTTTAAATACAAGCAAATCCCCATCTCGGA...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTTCTAGTACAGACAGCTaGTGTCATTTTGACACCTGG +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPASSTDS*CHFDTW
Trigger: CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
3UTR CAA 72 bp CAAGGCCCTAAAGAACACATGCTCCTACCCTATCATTaGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATC +
Preference number: 4 (lower is better)
Translates to: QGPKEHMLLPYH*VLPYAPGSPRI
Trigger: GATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp CATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCATATCCTGACACGGTaGGGAAGCTTAGATATGCCT +
Preference number: 4 (lower is better)
Translates to: HAPTLSFGSTLCAWKSSNHILTR*GSLDMP
Trigger: AGGCATATCTAAGCTTCCTCACCGTGTCAGGATATG...ATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGTGGTAAAATACAGCTaGTGTGCTGGAACCCTGTTG +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWVVKYS*CAGTLL
Trigger: CAACAGGGTTCCAGCACAGCAGCTGTATTTTACCAC...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR GCA 90 bp ACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAGTGGTAAAATACAGCTaGTGTGCTGGAACCCTGTTG +
Preference number: 4 (lower is better)
Translates to: TLSSTDSWCHFDTWGHTQVVKYS*CAGTLL
Trigger: CAACAGGGTTCCAGCACAGCAGCTGTATTTTACCAC...TTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR GCA 90 bp ACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGGTCTTTCACGTAGATTaGAGAGAGTCCACCTGGTAT +
Preference number: 4 (lower is better)
Translates to: THAPTLSFGSTLCAWKSSVFHVD*RESTWY
Trigger: ATACCAGGTGGACTCTCTGCAATCTACGTGAAAGAC...CGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGACAGAGCAAACCTACTaGCTGTATCTATACAGCATG +
Preference number: 4 (lower is better)
Translates to: ILTPGATHKESSPADAAKTEQTY*LYLYSM
Trigger: CATGCTGTATAGATACAGGCAGTAGGTTTGCTCTGT...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp ACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAATTTGGTTCTACCCTATaGGCCTGGAAGTCCTCGAAT +
Preference number: 4 (lower is better)
Translates to: TLSSTDSWCHFDTWGHTQFGSTL*AWKSSN
Trigger: ATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAA...TTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp TTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTCCAGATTATCCCCTTTaGGACAACACAAGCAAAAAT +
Preference number: 4 (lower is better)
Translates to: FGSTLCAWKSSNPSPCMGPDYPL*DNTSKN
Trigger: ATTTTTGCTTGTGTTGTCGCAAAGGGGATAATCTGG...ACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCCCCTCCCTCCAAGGCTaGACCTCAAATCTACCCGGG +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLPSLQG*TSNLPG
Trigger: CCCGGGTAGATTTGAGGTGCAGCCTTGGAGGGAGGG...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACATCAAATGGGTACCCATaGTCACACACACACACTTCC +
Preference number: 4 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTSNGYP*SHTHTS
Trigger: GGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGA...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCTGCAGAGAGTCCACCTaGTATACATTCTGGTTGGAA +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSCREST*YTFWLE
Trigger: TTCCAACCAGAATGTATACCAGGTGGACTCTCTGCA...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCTGTCATTTTGACACCTaGGGCCACACACAAAGAAAG +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSCHFDT*GHTQRK
Trigger: CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACA...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCTCTAGTACAGACAGCTaGTGTCATTTTGACACCTGG +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSSSTDS*CHFDTW
Trigger: CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp ATGCAAAAGGAAACAGCCTTACAAGGCCCTAAAGAACACATGCTCCTACCCTATATCCCAGTCCCTGCATaGGTAGGCTGTACACATGGG +
Preference number: 4 (lower is better)
Translates to: MQKETALQGPKEHMLLPYIPVPA*VGCTHG
Trigger: CCCATGTGTACAGCCTACCCATGCAGGGACTGGGAT...ATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTGTAAGGCTGTTTCCTTTTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGTCCTACCCTATCATTTaGTTCTACCCTATGCGCCTG +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQSYPII*FYPMRL
Trigger: CAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGA...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp GGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTAGTGAGCCCATGATTTaGTGTCTTTCCCAGATTATC +
Preference number: 4 (lower is better)
Translates to: GVILTPGATHKESSPADASEPMI*CLSQII
Trigger: GATAATCTGGGAAAGACACCAAATCATGGGCTCACT...AGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTAGTGAGCCCATGATTTaGTGTCTTTCCCAGATTATC +
Preference number: 4 (lower is better)
Translates to: TAGVILTPGATHKESSPASEPMI*CLSQII
Trigger: GATAATCTGGGAAAGACACCAAATCATGGGCTCACT...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGAGGGAGAACTCGGCTTaGAACTTACTGAAGCCACCT +
Preference number: 4 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKRENSA*NLLKPP
Trigger: AGGTGGCTTCAGTAAGTTCCAAGCCGAGTTCTCCCT...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR TCA 90 bp GTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTGTCGAAGGGCACGGGTCTaGGCGTATCTATCATGGGGG +
Preference number: 4 (lower is better)
Translates to: VSIQHVLLFQREWSKSLCRRARV*AYLSWG
Trigger: CCCCCATGATAGATACGCTCAGACCCGTGCCCTTCG...ACAGAGAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp TCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACTTCCCACAGTCACAGTGACTaGGCGGCTAATGCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: SNAFLLSNGYPCSHTHTSHSHSD*AANASQ
Trigger: TTGGCTGGCATTAGCCGCTCAGTCACTGTGACTGTG...GGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp AGTCGGTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATATGTCACATGGGCTGCTaGGTCCCAGCGTCCTCTCGA +
Preference number: 4 (lower is better)
Translates to: SRSILGCHLYSWQTMNFICHMGC*VPASSR
Trigger: TCGAGAGGACGCTGGGACTCAGCAGCCCATGTGACA...TATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGACCGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGTCTTTCACGTAGATTaGAGAGAGTCCACCTGGTAT +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWVFHVD*RESTWY
Trigger: ATACCAGGTGGACTCTCTGCAATCTACGTGAAAGAC...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR GCA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGGTATTTAAACTCTCCTaGGTTCTCAAAGAGATTCGG +
Preference number: 4 (lower is better)
Translates to: ILTPGATHKESSPADAAKVFKLS*VLKEIR
Trigger: CCGAATCTCTTTGAGAACGCAGGAGAGTTTAAATAC...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR GCA 90 bp GGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGTATTTAAACTCTCCTaGGTTCTCAAAGAGATTCGG +
Preference number: 4 (lower is better)
Translates to: GVILTPGATHKESSPADAVFKLS*VLKEIR
Trigger: CCGAATCTCTTTGAGAACGCAGGAGAGTTTAAATAC...AGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR GCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGCTTACTGAAGCCACCTaGCAGAACGAGAAAAGCAAT +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWLTEAT*QNEKSN
Trigger: ATTGCTTTTCTCGTTCTGGCAGGTGGCTTCAGTAAG...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000547291.1
CDS-3UTR CCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCTGCAGAGAGTCCACCTaGTATACATTCTGGTTGGAA +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGCREST*YTFWLE
Trigger: TTCCAACCAGAATGTATACCAGGTGGACTCTCTGCA...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACATGTCATTTTGACACCTaGGGCCACACACAAAGAAAG +
Preference number: 4 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTCHFDT*GHTQRK
Trigger: CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACA...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp GGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCCTGTATCTATACAGCATCCTACCCTATCATTTaGTTCTACCCTATGCGCCTG +
Preference number: 4 (lower is better)
Translates to: GRLYTWVQSKPTACIYTASYPII*FYPMRL
Trigger: CAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGA...TGCTGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGATGTGGCTGTCATCTTaGTATTCTGCTACACCTCTC +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWMWLSS*YSATPL
Trigger: GAGAGGTGTAGCAGAATACCAAGATGACAGCCACAT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGTTCCTCCCCAGTGAATaGAATCCAATTAATTCGGAC +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQFLPSE*NPINSD
Trigger: GTCCGAATTAATTGGATTTCATTCACTGGGGAGGAA...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp GTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATAAACTGACGCCACCGTCTTGCTaGTCGCCATTTCCGACGCGA +
Preference number: 4 (lower is better)
Translates to: VHSRMSSLFVANDEFHKLTPPSC*SPFPTR
Trigger: TCGCGTCGGAAATGGCGATCAGCAAGACGGTGGCGT...CAGTTTATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp TATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTGTTTGTCACATGGGCTGCTaGGTCCCAGCGTCCTCTCGA +
Preference number: 4 (lower is better)
Translates to: YLYSMSCYSKENGANLSVCHMGC*VPASSR
Trigger: TCGAGAGGACGCTGGGACTCAGCAGCCCATGTGACA...AACAGAGAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGTTTAAAGTGAGCCCATaGTTTGGTGTCTTTCCCAGA +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQFKVSP*FGVFPR
Trigger: TCTGGGAAAGACACCAAATCATGGGCTCACTTTAAA...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGACATTACAACAGGGATaGCAAAGTTGCCTCCTAAGT +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWTLQQG*QSCLLS
Trigger: ACTTAGGAGGCAACTTTGTCATCCCTGTTGTAATGT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp ACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGCAATCATCTAACCTaGGAAGCCGTAGTAGTTTTC +
Preference number: 4 (lower is better)
Translates to: TLSSTDSWCHFDTWGHTQSNHLT*EAVVVF
Trigger: GAAAACTACTACGGCTTCTCAGGTTAGATGATTGCT...TTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000547291.1
CDS-3UTR GCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTCGTTCCAGTCGCTaGTGCTCTCGTCGTAGAGCA +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLSRSSR*CSRRRA
Trigger: TGCTCTACGACGAGAGCAGCAGCGACTGGAACGAGA...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGAAAATACAGCTGCTGTaGTGGAACCCTGTTGTCACA +
Preference number: 4 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKKIQLL*WNPVVT
Trigger: TGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTT...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR GCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGACAGAGCAAACCTACTaGCTGTATCTATACAGCATG +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWTEQTY*LYLYSM
Trigger: CATGCTGTATAGATACAGGCAGTAGGTTTGCTCTGT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR GCA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCGTCATCTTGGTATTCTaGTACACCTCTCTGTGGTTA +
Preference number: 4 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGVILVF*YTSLWL
Trigger: TAACCACAGAGAGGTGTAGCAGAATACCAAGATGAC...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp ATGCAAAAGGAAACAGCCTTACAAGGCCCTAAAGAACACATGCTCCTACCCTATAGTCTGTTGCACTATTaGGGTCTCGGTCAAGGTCAG +
Preference number: 4 (lower is better)
Translates to: MQKETALQGPKEHMLLPYSLLHY*GLGQGQ
Trigger: CTGACCTTGACCGAGACCCCAATAGTGCAACAGACT...ATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTGTAAGGCTGTTTCCTTTTGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp ACATGTGGCTGTCATCTTGGTATTCTGCTACACCTCTCTGTGGTTAATATCCAAACACGTCCAAGTTGGTaGAGTCTTTGGCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: TCGCHLGILLHLSVVNIQTRPSW*SLWHSP
Trigger: TGGGCTGTGCCAAAGACTCCACCAACTTGGACGTGT...TTGGATATTAACCACAGAGAGGTGTAGCAGAATACCAAGATGACAGCCACATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGATGAATCTCTCTCAATaGAGCTGCCCAGATAGTTTT +
Preference number: 4 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQMNLSQ*SCPDSF
Trigger: AAAACTATCTGGGCAGCTTCATTGAGAGAGATTCAT...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp AGAACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCATGAATCTCTCTCAATaGAGCTGCCCAGATAGTTTT +
Preference number: 4 (lower is better)
Translates to: RTHAPTLSFGSTLCAWKSMNLSQ*SCPDSF
Trigger: AAAACTATCTGGGCAGCTTCATTGAGAGAGATTCAT...GGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR TCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCCCCGGGCTTCATCTATaGAAGAAATGGCCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLPGLHL*KKWPQG
Trigger: TCCCTGAGGCCATTTCTTTCATAGATGAAGCCCGGG...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp GGAAGCTTAGATATGCCTTGCCATGCGCATGCTAGGGGAAAAAGTGGAGACATCGTGTATTTTTACATTTaGGGTAAGGAGAGGGTAGGT +
Preference number: 4 (lower is better)
Translates to: GSLDMPCHAHARGKSGDIVYFYI*GKERVG
Trigger: ACCTACCCTCTCCTTACCTCAAATGTAAAAATACAC...GATGTCTCCACTTTTTCCCCTAGCATGCGCATGGCAAGGCATATCTAAGCTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCAGACACCACAGTTCTTaGCCCGGGCTTCATCTTCCA +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLRHHSS*PGLHLP
Trigger: TGGAAGATGAAGCCCGGGGCAAGAACTGTGGTGTCT...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000308385.6
CDS-3UTR GCA 90 bp ACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAACCAGATTATCCCCTTTaGGACAACACAAGCAAAAAT +
Preference number: 4 (lower is better)
Translates to: TLSSTDSWCHFDTWGHTQPDYPL*DNTSKN
Trigger: ATTTTTGCTTGTGTTGTCGCAAAGGGGATAATCTGG...TTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGACCTGGTATACATTCTaGTTGGAAGGGGTGGTAAAA +
Preference number: 4 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKTWYTF*LEGVVK
Trigger: TTTTACCACCCCTTCCAACCAGAATGTATACCAGGT...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCACGAGCCGTCTAGATTaGTCTCGCAATGCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLTSRLD*SRNAGR
Trigger: TCTCCCTGCATTGCGAGACCAATCTAGACGGCTCGT...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp ACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAATTTCTCTTATCAAATaGGTACCCATGCTCACACAC +
Preference number: 4 (lower is better)
Translates to: TLSSTDSWCHFDTWGHTQISLIK*VPMLTH
Trigger: GTGTGTGAGCATGGGTACCCATTTGATAAGAGAAAT...TTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp CATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCATGACAACAGACTaGAAAAAGAATTATCCCTAC +
Preference number: 4 (lower is better)
Translates to: HAPTLSFGSTLCAWKSSNPMTTD*KKNYPY
Trigger: GTAGGGATAATTCTTTTTCCAGTCTGTTGTCATGGG...ATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGTTCCTCAGCAAGCTATaGTCTATAGGTTCATTTTTC +
Preference number: 4 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWFLSKL*SIGSFF
Trigger: GAAAAATGAACCTATAGAGCATAGCTTGCTGAGGAA...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCAGGGAGAACTCGGCTTaGAACTTACTGAAGCCACCT +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLRENSA*NLLKPP
Trigger: AGGTGGCTTCAGTAAGTTCCAAGCCGAGTTCTCCCT...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCTGCTACACCTCTCTGTaGTTAATATCCAAATTGTAT +
Preference number: 4 (lower is better)
Translates to: VQTAGVILTPGATHKESSCYTSL*LISKLY
Trigger: ATACAATTTGGATATTAACCACAGAGAGGTGTAGCA...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTTCAATAAGGGTTTCTaGCCCACATCCCAAGCCAGT +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLFNKGF*PTSQAS
Trigger: ACTGGCTTGGGATGTGGGTCAGAAACCCTTATTGAA...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp CTGGAAAAAGAATTATCCCTACTTCCTCTTTGGCATTATCTCAGCATTATAAAGATGGCCGACTCGATGTaGGACGACTCGTATAGCTCC +
Preference number: 4 (lower is better)
Translates to: LEKELSLLPLWHYLSIIKMADSM*DDSYSS
Trigger: GGAGCTATACGAGTCGTCGCACATCGAGTCGGCCAT...CTTTATAATGCTGAGATAATGCCAAAGAGGAAGTAGGGATAATTCTTTTTCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp CTGGAAAAAGAATTATCCCTACTTCCTCTTTGGCATTATCTCAGCATTATAAAGAACCCTGTTGTCACATaGGCTGCTGAGTCCCAGCGT +
Preference number: 4 (lower is better)
Translates to: LEKELSLLPLWHYLSIIKNPVVT*AAESQR
Trigger: ACGCTGGGACTCAGCAGCCCATGTGACAACAGGGTT...CTTTATAATGCTGAGATAATGCCAAAGAGGAAGTAGGGATAATTCTTTTTCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp GTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATAAACTGCGATTTGCTATCTCTTaGACTCAGCCTCGCACACCC +
Preference number: 4 (lower is better)
Translates to: VHSRMSSLFVANDEFHKLRFAIS*TQPRTP
Trigger: GGGTGTGCGAGGCTGAGTCCAAGAGATAGCAAATCG...CAGTTTATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp TCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACTTCCTTCCTCCCCAGTGAATaGAATCCAATTAATTCGGAC +
Preference number: 4 (lower is better)
Translates to: SNAFLLSNGYPCSHTHTSFLPSE*NPINSD
Trigger: GTCCGAATTAATTGGATTTCATTCACTGGGGAGGAA...GGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCAAAATACAGCTGCTGTaGTGGAACCCTGTTGTCACA +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLKIQLL*WNPVVT
Trigger: TGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTT...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CCA 90 bp ACATGTGGCTGTCATCTTGGTATTCTGCTACACCTCTCTGTGGTTAATATCCAAACCTGGTATACATTCTaGTTGGAAGGGGTGGTAAAA +
Preference number: 4 (lower is better)
Translates to: TCGCHLGILLHLSVVNIQTWYTF*LEGVVK
Trigger: TTTTACCACCCCTTCCAACCAGAATGTATACCAGGT...TTGGATATTAACCACAGAGAGGTGTAGCAGAATACCAAGATGACAGCCACATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTGCAGAGAGTCCACCTaGTATACATTCTGGTTGGAA +
Preference number: 4 (lower is better)
Translates to: CLYLYSMSCYSKENGANLCREST*YTFWLE
Trigger: TTCCAACCAGAATGTATACCAGGTGGACTCTCTGCA...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
3UTR CAA 72 bp TTCAGCATTCTCACACTAGGATATCTGCAGGTAGAATaGCCCATGACAACAGACTGGAAAAAGAATTATCCC +
Preference number: 4 (lower is better)
Translates to: FSILTLGYLQVE*PMTTDWKKNYP
Trigger: GGGATAATTCTTTTTCCAGTCTGTTGTCATGGGCAATTCTACCTGCAGATATCCTAGTGTGAGAATGCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp ACAATCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACGTATTGCATTTGAGGTaGCACTCCCTGAAGAATTTT +
Preference number: 4 (lower is better)
Translates to: TIKCISLIKWVPMLTHTHVLHLR*HSLKNF
Trigger: AAAATTCTTCAGGGAGTGTCACCTCAAATGCAATAC...GTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp ACAATCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACAGCTTAAAAGAACCTTaGCCTACTATGCCTACAAGT +
Preference number: 4 (lower is better)
Translates to: TIKCISLIKWVPMLTHTHSLKEP*PTMPTS
Trigger: ACTTGTAGGCATAGTAGGGCAAGGTTCTTTTAAGCT...GTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR TCA 90 bp CTGGAAAAAGAATTATCCCTACTTCCTCTTTGGCATTATCTCAGCATTATAAAGCCACAAATACAGAGCTaGAATCTCTCTTTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: LEKELSLLPLWHYLSIIKPQIQS*NLSLAP
Trigger: AGGAGCCAAAGAGAGATTTCAGCTCTGTATTTGTGG...CTTTATAATGCTGAGATAATGCCAAAGAGGAAGTAGGGATAATTCTTTTTCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp ACAATCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACAACCTTGCCCTACTATaGCTACAAGTCAAAATCAAT +
Preference number: 4 (lower is better)
Translates to: TIKCISLIKWVPMLTHTHNLALL*LQVKIN
Trigger: ATTGATTTTGACTTGTAGGCATAGTAGGGCAAGGTT...GTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGATTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp CTGGAAAAAGAATTATCCCTACTTCCTCTTTGGCATTATCTCAGCATTATAAAGTCTAGTACAGACAGCTaGTGTCATTTTGACACCTGG +
Preference number: 4 (lower is better)
Translates to: LEKELSLLPLWHYLSIIKSSTDS*CHFDTW
Trigger: CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA...CTTTATAATGCTGAGATAATGCCAAAGAGGAAGTAGGGATAATTCTTTTTCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp TATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTGTTTCCGAGATGGGGATTTaGTTGTATTTAAACTCTCCT +
Preference number: 4 (lower is better)
Translates to: YLYSMSCYSKENGANLSVSEMGI*LYLNSP
Trigger: AGGAGAGTTTAAATACAAGCAAATCCCCATCTCGGA...AACAGAGAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR GCA 90 bp GTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTGTAAGTTGCCTCCTAAGTaGCAATGTAAAATTCTAAAG +
Preference number: 4 (lower is better)
Translates to: VSIQHVLLFQREWSKSLCKLPPK*QCKILK
Trigger: CTTTAGAATTTTACATTGGCACTTAGGAGGCAACTT...ACAGAGAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CCA 90 bp TATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTGTTTCCCTACTTCCTCTTTaGCATTATCTCAGCATTATA +
Preference number: 4 (lower is better)
Translates to: YLYSMSCYSKENGANLSVSLLPL*HYLSII
Trigger: TATAATGCTGAGATAATGCCAAAGAGGAAGTAGGGA...AACAGAGAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
3UTR CAA 72 bp TTAGTGATAATAGTGTCCGTAAAGATGTCATCAGAATaGGTAAAGTCAAGCATGCTGCAAATATACCCTTTG +
Preference number: 4 (lower is better)
Translates to: LVIIVSVKMSSE*VKSSMLQIYPL
Trigger: CAAAGGGTATATTTGCAGCATGCTTGACTTTACCAATTCTGATGACATCTTTACGGACACTATTATCACTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS GCA 90 bp GCCCGAGCACCGACTCGCCGCCCGTATTCTCGTTCCAGTCGCTGCTaGTCTCGTCGTAGAGCACCACTGTGTCGGTGCCACAGCGCCGGG +
Preference number: 5 (lower is better)
Translates to: ARAPTRRPYSRSSRC*SRRRAPLCRCHSAG
Trigger: CCCGGCGCTGTGGCACCGACACAGTGGTGCTCTACGACGAGAGCAGCAGCGACTGGAACGAGAATACGGGCGGCGAGTCGGTGCTCGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000548755.1
CDS GCA 90 bp GCAGCCCGAGCACCGACTCGCCGCCCGTATTCTCGTTCCAGTCGCTaGTGCTCTCGTCGTAGAGCACCACTGTGTCGGTGCCACAGCGCC +
Preference number: 5 (lower is better)
Translates to: AARAPTRRPYSRSSR*CSRRRAPLCRCHSA
Trigger: GGCGCTGTGGCACCGACACAGTGGTGCTCTACGACGAGAGCAGCAGCGACTGGAACGAGAATACGGGCGGCGAGTCGGTGCTCGGGCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS GCA 90 bp GGCCGGCAGTCCATCAGCAGCAGCCGCTCGTTGCCCAGCTCCAGCTaGTCGTTGAGCCACGCCACCGTCTTGCTGATCGCCATTTCCGAC +
Preference number: 5 (lower is better)
Translates to: GRQSISSSRSLPSSS*SLSHATVLLIAISD
Trigger: GTCGGAAATGGCGATCAGCAAGACGGTGGCGTGGCTCAACGAGCAGCTGGAGCTGGGCAACGAGCGGCTGCTGCTGATGGACTGCCGGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000548755.1
CDS CCA 90 bp CGGGGTTTAATTCCGCCTCGCCTTACCCAAGCCGAGGCTAGCGGTTaGGGCAGACGAGACAGAAGTAAAGCCGGAGGTTCTCTCTGCACC +
Preference number: 5 (lower is better)
Translates to: RGLIPPRLTQAEASG*GRRDRSKAGGSLCT
Trigger: GGTGCAGAGAGAACCTCCGGCTTTACTTCTGTCTCGTCTGCCCCAACCGCTAGCCTCGGCTTGGGTAAGGCGAGGCGGAATTAAACCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp ACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTAGGCTGTACTCGTCCTTGAGCTTCTaGAGCAGCAGCCCGAGCACC +
Preference number: 5 (lower is better)
Translates to: TLCAWKSSNPSPCMGRLYSSLSF*SSSPST
Trigger: GGTGCTCGGGCTGCTGCTCAAGAAGCTCAAGGACGA...GTACAGCCTACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGAGCAGCAGCCGCTCGTaGCCCAGCTCCAGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQSSSRS*PSSSCS
Trigger: CGAGCAGCTGGAGCTGGGCAACGAGCGGCTGCTGCT...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTCACGAGCCGTCTAGATaGGTCTCGCAATGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGHEPSR*VSQCRE
Trigger: CTCCCTGCATTGCGAGACCAATCTAGACGGCTCGTG...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS GCA 90 bp AGCGGTTGGGGCAGACGAGACAGAAGTAAAGCCGGAGGTTCTCTCTaGACCCAGCTGCAGCCGCTGGCTCTTAGTGTCAATGAATCTCTC +
Preference number: 5 (lower is better)
Translates to: SGWGRRDRSKAGGSL*TQLQPLALSVNESL
Trigger: GAGAGATTCATTGACACTAAGAGCCAGCGGCTGCAGCTGGGTGCAGAGAGAACCTCCGGCTTTACTTCTGTCTCGTCTGCCCCAACCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS GCA 90 bp GAAGGAAGGCTGGCTGTTGGACAGCGGACTACCATCCGAGTCTGTTaGACTATTGGGGTCTCGGTCAAGGTCAGACTCGATGTCCGAGGA +
Preference number: 5 (lower is better)
Translates to: EGRLAVGQRTTIRVC*TIGVSVKVRLDVRG
Trigger: TCCTCGGACATCGAGTCTGACCTTGACCGAGACCCCAATAGTGCAACAGACTCGGATGGTAGTCCGCTGTCCAACAGCCAGCCTTCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS CCA 90 bp GCTGGCTGTTGGACAGCGGACTACCATCCGAGTCTGTTGCACTATTaGGGTCTCGGTCAAGGTCAGACTCGATGTCCGAGGAAGAGTCAG +
Preference number: 5 (lower is better)
Translates to: AGCWTADYHPSLLHY*GLGQGQTRCPRKSQ
Trigger: CTGACTCTTCCTCGGACATCGAGTCTGACCTTGACCGAGACCCCAATAGTGCAACAGACTCGGATGGTAGTCCGCTGTCCAACAGCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS-3UTR CAA 90 bp ACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAGCTCCAGCTGCTCGTaGAGCCACGCCACCGTCTTG +
Preference number: 5 (lower is better)
Translates to: THAPTLSFGSTLCAWKSSSSSCS*SHATVL
Trigger: CAAGACGGTGGCGTGGCTCAACGAGCAGCTGGAGCT...CGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS CCA 90 bp GGCGTCTTTCTCCCCGGATTATTTAAGACTCGATTTGCTATCTCTTaGACTCAGCCTCGCACACCCCCTGCGCGAGGCAGCTCCTCAATG +
Preference number: 5 (lower is better)
Translates to: GVFLPGLFKTRFAIS*TQPRTPPARGSSSM
Trigger: CATTGAGGAGCTGCCTCGCGCAGGGGGTGTGCGAGGCTGAGTCCAAGAGATAGCAAATCGAGTCTTAAATAATCCGGGGAGAAAGACGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS CCA 90 bp AGTAGAGGAAGGGCAAGATCTCCACTGGGAAGGAAGGCTGGCTGTTaGACAGCGGACTACCATCCGAGTCTGTTGCACTATTGGGGTCTC +
Preference number: 5 (lower is better)
Translates to: SRGRARSPLGRKAGC*TADYHPSLLHYWGL
Trigger: GAGACCCCAATAGTGCAACAGACTCGGATGGTAGTCCGCTGTCCAACAGCCAGCCTTCCTTCCCAGTGGAGATCTTGCCCTTCCTCTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS-3UTR CAA 90 bp GTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCAGCCACGCCACCGTCTaGCTGATCGCCATTTCCGAC +
Preference number: 5 (lower is better)
Translates to: VQTAGVILTPGATHKESSSHATV*LIAISD
Trigger: GTCGGAAATGGCGATCAGCAAGACGGTGGCGTGGCT...GCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGCGGCAGCCCTCGTCCTaGAGCTTCTTGAGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWRQPSS*SFLSSS
Trigger: GCTGCTGCTCAAGAAGCTCAAGGACGAGGGCTGCCG...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTAAGGAAGGCTGGCTGTaGGACAGCGGACTACCATCC +
Preference number: 5 (lower is better)
Translates to: TAGVILTPGATHKESSPAKEGWL*DSGLPS
Trigger: GGATGGTAGTCCGCTGTCCAACAGCCAGCCTTCCTT...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGAGCCACGCCACCGTCTaGCTGATCGCCATTTCCGAC +
Preference number: 5 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWSHATV*LIAISD
Trigger: GTCGGAAATGGCGATCAGCAAGACGGTGGCGTGGCT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp GGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCCTGTATCTATACAGCAAGCTCCAGCTGCTCGTaGAGCCACGCCACCGTCTTG +
Preference number: 5 (lower is better)
Translates to: GRLYTWVQSKPTACIYTASSSCS*SHATVL
Trigger: CAAGACGGTGGCGTGGCTCAACGAGCAGCTGGAGCT...TGCTGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGTCGTCCTTGAGCTTCTaGAGCAGCAGCCCGAGCACC +
Preference number: 5 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQSSLSF*SSSPST
Trigger: GGTGCTCGGGCTGCTGCTCAAGAAGCTCAAGGACGA...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp GGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCCTGTATCTATACAGCACGGCAGCCCTCGTCCTaGAGCTTCTTGAGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: GRLYTWVQSKPTACIYTARQPSS*SFLSSS
Trigger: GCTGCTGCTCAAGAAGCTCAAGGACGAGGGCTGCCG...TGCTGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGCAGGGAGAACTCGGCTaGGAACTTACTGAAGCCACC +
Preference number: 5 (lower is better)
Translates to: ILTPGATHKESSPADAAKQGELG*ELTEAT
Trigger: GGTGGCTTCAGTAAGTTCCAAGCCGAGTTCTCCCTG...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS GCA 90 bp TCCACCTGGTATACATTCTGGTTGGAAGGGGTGGTAAAATACAGCTaGTGTGCTGGAACCCTGTTGTCACATGGGCTGCTGAGTCCCAGC +
Preference number: 5 (lower is better)
Translates to: STWYTFWLEGVVKYS*CAGTLLSHGLLSPS
Trigger: GCTGGGACTCAGCAGCCCATGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTTACCACCCCTTCCAACCAGAATGTATACCAGGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CCA 90 bp GTATACATTCTGGTTGGAAGGGGTGGTAAAATACAGCTGCTGTGCTaGAACCCTGTTGTCACATGGGCTGCTGAGTCCCAGCGTCCTCTC +
Preference number: 5 (lower is better)
Translates to: VYILVGRGGKIQLLC*NPVVTWAAESQRPL
Trigger: GAGAGGACGCTGGGACTCAGCAGCCCATGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTTACCACCCCTTCCAACCAGAATGTATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CAA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTCCGCACTTGGTAACCTaGTCTAGTACAGACAGCTGG +
Preference number: 5 (lower is better)
Translates to: TAGVILTPGATHKESSPAPHLVT*SSTDSW
Trigger: CCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CAA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGAGTCTGTTGCACTATaGGGGTCTCGGTCAAGGTCA +
Preference number: 5 (lower is better)
Translates to: TAGVILTPGATHKESSPAESVAL*GSRSRS
Trigger: TGACCTTGACCGAGACCCCAATAGTGCAACAGACTC...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGAAGGAAGGCTGGCTGTaGGACAGCGGACTACCATCC +
Preference number: 5 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWKEGWL*DSGLPS
Trigger: GGATGGTAGTCCGCTGTCCAACAGCCAGCCTTCCTT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGAAGACACCACAGTTCTaGCCCCGGGCTTCATCTATG +
Preference number: 5 (lower is better)
Translates to: ILTPGATHKESSPADAAKKTPQF*PRASSM
Trigger: CATAGATGAAGCCCGGGGCAAGAACTGTGGTGTCTT...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp CCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTTATCTGCAGGTAGAATaGCCCATGACAACAGACTGG +
Preference number: 5 (lower is better)
Translates to: PRETAEGPDTFQQGGVWGYLQVE*PMTTDW
Trigger: CCAGTCTGTTGTCATGGGCAATTCTACCTGCAGATA...ACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCTGTGCTGGAACCCTGTaGTCACATGGGCTGCTGAGT +
Preference number: 5 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGCAGTL*SHGLLS
Trigger: ACTCAGCAGCCCATGTGACAACAGGGTTCCAGCACA...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CAA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGGTCTTTCACGTAGATaGCAGAGAGTCCACCTGGTA +
Preference number: 5 (lower is better)
Translates to: TAGVILTPGATHKESSPAGLSRR*QRVHLV
Trigger: TACCAGGTGGACTCTCTGCAATCTACGTGAAAGACC...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CAA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTCTCCTACCCTATCATTaGGTTCTACCCTATGCGCCT +
Preference number: 5 (lower is better)
Translates to: TAGVILTPGATHKESSPALLPYH*VLPYAP
Trigger: AGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAG...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp GGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCCTGTATCTATACAGCACACGAGCCGTCTAGATaGGTCTCGCAATGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: GRLYTWVQSKPTACIYTAHEPSR*VSQCRE
Trigger: CTCCCTGCATTGCGAGACCAATCTAGACGGCTCGTG...TGCTGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp ACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGGAGTCTGTTGCACTATaGGGGTCTCGGTCAAGGTCA +
Preference number: 5 (lower is better)
Translates to: THAPTLSFGSTLCAWKSSESVAL*GSRSRS
Trigger: TGACCTTGACCGAGACCCCAATAGTGCAACAGACTC...CGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTAAACTGGGACAGGTTTaGGCTCCAGTGATCCGAGAT +
Preference number: 5 (lower is better)
Translates to: TAGVILTPGATHKESSPAKLGQV*APVIRD
Trigger: ATCTCGGATCACTGGAGCCAAAACCTGTCCCAGTTT...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS CCA 90 bp AGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTaGGGTCTTTCACGTAGATTGCAGAGAGTCCACCTGGTATACATT +
Preference number: 5 (lower is better)
Translates to: RETAEGPDTFQQGGV*GLSRRLQRVHLVYI
Trigger: AATGTATACCAGGTGGACTCTCTGCAATCTACGTGAAAGACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CAA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGAAGACACCACAGTTCTaGCCCCGGGCTTCATCTTCC +
Preference number: 5 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKKTPQF*PRASSS
Trigger: GGAAGATGAAGCCCGGGGCAAGAACTGTGGTGTCTT...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000308385.6
CDS-3UTR CAA 90 bp GGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCCTGTATCTATACAGCATGTGCTGGAACCCTGTaGTCACATGGGCTGCTGAGT +
Preference number: 5 (lower is better)
Translates to: GRLYTWVQSKPTACIYTACAGTL*SHGLLS
Trigger: ACTCAGCAGCCCATGTGACAACAGGGTTCCAGCACA...TGCTGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACCGCACTTGGTAACCTaGTCTAGTACAGACAGCTGG +
Preference number: 5 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTPHLVT*SSTDSW
Trigger: CCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CAA 90 bp CACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCTCCAACACGTCCAAGTaGGTGGAGTCTTTGGCACAG +
Preference number: 5 (lower is better)
Translates to: HLVTLSSTDSWCHFDTWGSNTSK*VESLAQ
Trigger: CTGTGCCAAAGACTCCACCAACTTGGACGTGTTGGA...GCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp TTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATCCCAGTCCCTGCATGGGTACGTTCAAGATGTACTaGATGCCGAATTCCTCCAAC +
Preference number: 5 (lower is better)
Translates to: FGSTLCAWKSSNPSPCMGTFKMY*MPNSSN
Trigger: GTTGGAGGAATTCGGCATCAAGTACATCTTGAACGT...ACCCATGCAGGGACTGGGATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACAAAGACACCACAGTTCTaGCCCCGGGCTTCATCTATG +
Preference number: 5 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTKTPQF*PRASSM
Trigger: CATAGATGAAGCCCGGGGCAAGAACTGTGGTGTCTT...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp ATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGCATGTGGCTGTCATCTaGGTATTCTGCTACACCTCT +
Preference number: 5 (lower is better)
Translates to: ILTPGATHKESSPADAAKHVAVI*VFCYTS
Trigger: AGAGGTGTAGCAGAATACCAAGATGACAGCCACATG...CTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACTCCTACCCTATCATTaGGTTCTACCCTATGCGCCT +
Preference number: 5 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTLLPYH*VLPYAP
Trigger: AGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAG...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGTACCATCCGAGTCTGTaGCACTATTGGGGTCTCGGT +
Preference number: 5 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKYHPSL*HYWGLG
Trigger: ACCGAGACCCCAATAGTGCAACAGACTCGGATGGTA...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS TCA 90 bp CCCAGCTGCAGCCGCTGGCTCTTAGTGTCAATGAATCTCTCTCAATaGAGCTGCCCAGATAGTTTTTGTTCCTCCCCAGTGAATGAAATC +
Preference number: 5 (lower is better)
Translates to: PSCSRWLLVSMNLSQ*SCPDSFCSSPVNEI
Trigger: GATTTCATTCACTGGGGAGGAACAAAAACTATCTGGGCAGCTTCATTGAGAGAGATTCATTGACACTAAGAGCCAGCGGCTGCAGCTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS TCA 90 bp CTTACTGAAGCCACCTGCCAGAACGAGAAAAGCAATCATCTAACCTaGGAAGCCGTAGTAGTTTTCACAGCTTGTAAGAACCGCAGCCCG +
Preference number: 5 (lower is better)
Translates to: LTEATCQNEKSNHLT*EAVVVFTACKNRSP
Trigger: CGGGCTGCGGTTCTTACAAGCTGTGAAAACTACTACGGCTTCTCAGGTTAGATGATTGCTTTTCTCGTTCTGGCAGGTGGCTTCAGTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000547291.1
CDS-3UTR CAA 90 bp CATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGAATAAGAGATTCGGCAAATaGGGGGTGACGTTCAAGATG +
Preference number: 5 (lower is better)
Translates to: HAPTLSFGSTLCAWKSSNKRFGK*GVTFKM
Trigger: CATCTTGAACGTCACCCCCAATTTGCCGAATCTCTT...ATTCGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGAAGAGATTCGGCAAATaGGGGGTGACGTTCAAGATG +
Preference number: 5 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWKRFGK*GVTFKM
Trigger: CATCTTGAACGTCACCCCCAATTTGCCGAATCTCTT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp ACACATGCTCCTACCCTATCATTTGGTTCTACCCTATGCGCCTGGAAGTCCTCGTGGTATACATTCTGGTaGGAAGGGGTGGTAAAATAC +
Preference number: 5 (lower is better)
Translates to: THAPTLSFGSTLCAWKSSWYTFW*EGVVKY
Trigger: GTATTTTACCACCCCTTCCAACCAGAATGTATACCA...CGAGGACTTCCAGGCGCATAGGGTAGAACCAAATGATAGGGTAGGAGCATGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp ATGCAAAAGGAAACAGCCTTACAAGGCCCTAAAGAACACATGCTCCTACCCTATTCCAACACGTCCAAGTaGGTGGAGTCTTTGGCACAG +
Preference number: 5 (lower is better)
Translates to: MQKETALQGPKEHMLLPYSNTSK*VESLAQ
Trigger: CTGTGCCAAAGACTCCACCAACTTGGACGTGTTGGA...ATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTGTAAGGCTGTTTCCTTTTGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACAACGTTCAAGATGTACTaGATGCCGAATTCCTCCAAC +
Preference number: 5 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTTFKMY*MPNSSN
Trigger: GTTGGAGGAATTCGGCATCAAGTACATCTTGAACGT...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp ACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTATCCCTACTTCCTCTTaGGCATTATCTCAGCATTAT +
Preference number: 5 (lower is better)
Translates to: TAGVILTPGATHKESSPAIPTSS*ALSQHY
Trigger: ATAATGCTGAGATAATGCCAAAGAGGAAGTAGGGAT...AGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp AGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGTGGTATACATTCTGGTaGGAAGGGGTGGTAAAATAC +
Preference number: 5 (lower is better)
Translates to: STDSWCHFDTWGHTQRKQWYTFW*EGVVKY
Trigger: GTATTTTACCACCCCTTCCAACCAGAATGTATACCA...CTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CAA 90 bp ATGCAAAAGGAAACAGCCTTACAAGGCCCTAAAGAACACATGCTCCTACCCTATGGTCTTTCACGTAGATaGCAGAGAGTCCACCTGGTA +
Preference number: 5 (lower is better)
Translates to: MQKETALQGPKEHMLLPYGLSRR*QRVHLV
Trigger: TACCAGGTGGACTCTCTGCAATCTACGTGAAAGACC...ATAGGGTAGGAGCATGTGTTCTTTAGGGCCTTGTAAGGCTGTTTCCTTTTGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCCCAGATTATCCCCTTaGCGACAACACAAGCAAAAA +
Preference number: 5 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKPRLSP*RQHKQK
Trigger: TTTTTGCTTGTGTTGTCGCAAAGGGGATAATCTGGG...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGATCCGAGATGGGGATTaGCTTGTATTTAAACTCTCC +
Preference number: 5 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWIRDGD*LVFKLS
Trigger: GGAGAGTTTAAATACAAGCAAATCCCCATCTCGGAT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGTGGTATACATTCTGGTaGGAAGGGGTGGTAAAATAC +
Preference number: 5 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKWYTFW*EGVVKY
Trigger: GTATTTTACCACCCCTTCCAACCAGAATGTATACCA...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS-3UTR CAA 90 bp CCGCACTTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGAAGATGTCATCAGAATaGGTAAAGTCAAGCATGCTG +
Preference number: 5 (lower is better)
Translates to: PHLVTLSSTDSWCHFDTWKMSSE*VKSSML
Trigger: CAGCATGCTTGACTTTACCAATTCTGATGACATCTT...CCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp GTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACATATTTAAGACTCGATTaGCTATCTCTTGGACTCAGC +
Preference number: 5 (lower is better)
Translates to: VTLSSTDSWCHFDTWGHTYLRLD*LSLGLS
Trigger: GCTGAGTCCAAGAGATAGCAAATCGAGTCTTAAATA...TGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp AGTCGGTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATACAGGGAGAACTCGGCTaGGAACTTACTGAAGCCACC +
Preference number: 5 (lower is better)
Translates to: SRSILGCHLYSWQTMNFIQGELG*ELTEAT
Trigger: GGTGGCTTCAGTAAGTTCCAAGCCGAGTTCTCCCTG...TATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGACCGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp TGCCTGTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTACCATCCGAGTCTGTaGCACTATTGGGGTCTCGGT +
Preference number: 5 (lower is better)
Translates to: CLYLYSMSCYSKENGANLYHPSL*HYWGLG
Trigger: ACCGAGACCCCAATAGTGCAACAGACTCGGATGGTA...GAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATACAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp TCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGATCCGAGATGGGGATTaGCTTGTATTTAAACTCTCC +
Preference number: 5 (lower is better)
Translates to: SSTDSWCHFDTWGHTQRKIRDGD*LVFKLS
Trigger: GGAGAGTTTAAATACAAGCAAATCCCCATCTCGGAT...CTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000547291.1
CDS-3UTR CAA 90 bp GTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTGTCCGCACTTGGTAACCTaGTCTAGTACAGACAGCTGG +
Preference number: 5 (lower is better)
Translates to: VSIQHVLLFQREWSKSLCPHLVT*SSTDSW
Trigger: CCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGG...ACAGAGAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp GGTAGGCTGTACACATGGGTACAGAGCAAACCTACTGCCTGTATCTATACAGCAAAGATGTCATCAGAATaGGTAAAGTCAAGCATGCTG +
Preference number: 5 (lower is better)
Translates to: GRLYTWVQSKPTACIYTAKMSSE*VKSSML
Trigger: CAGCATGCTTGACTTTACCAATTCTGATGACATCTT...TGCTGTATAGATACAGGCAGTAGGTTTGCTCTGTACCCATGTGTACAGCCTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp GTATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTGTGGTCTTTCACGTAGATaGCAGAGAGTCCACCTGGTA +
Preference number: 5 (lower is better)
Translates to: VSIQHVLLFQREWSKSLCGLSRR*QRVHLV
Trigger: TACCAGGTGGACTCTCTGCAATCTACGTGAAAGACC...ACAGAGAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS-3UTR CAA 90 bp GTCCATTCTAGGATGTCATCTTTATTCGTGGCAAACGATGAATTTCATAAACTGTCGATTTGCTATCTCTaGGACTCAGCCTCGCACACC +
Preference number: 5 (lower is better)
Translates to: VHSRMSSLFVANDEFHKLSICYL*DSASHT
Trigger: GGTGTGCGAGGCTGAGTCCAAGAGATAGCAAATCGA...CAGTTTATGAAATTCATCGTTTGCCACGAATAAAGATGACATCCTAGAATGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp TCAAATGCATTTCTCTTATCAAATGGGTACCCATGCTCACACACACACACTTCCAAGCTTAAAAGAACCTaGCCCTACTATGCCTACAAG +
Preference number: 5 (lower is better)
Translates to: SNAFLLSNGYPCSHTHTSKLKRT*PYYAYK
Trigger: CTTGTAGGCATAGTAGGGCAAGGTTCTTTTAAGCTT...GGAAGTGTGTGTGTGTGAGCATGGGTACCCATTTGATAAGAGAAATGCATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS-3UTR CAA 90 bp TATCTATACAGCATGTCCTGTTATTCCAAAGAGAATGGAGCAAATCTCTCTGTTCCCAGATTATCCCCTTaGCGACAACACAAGCAAAAA +
Preference number: 5 (lower is better)
Translates to: YLYSMSCYSKENGANLSVPRLSP*RQHKQK
Trigger: TTTTTGCTTGTGTTGTCGCAAAGGGGATAATCTGGG...AACAGAGAGATTTGCTCCATTCTCTTTGGAATAACAGGACATGCTGTATAGATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS TCA 72 bp GTCCCTAGGCGGGCAGCGCGGCTCCGAAGCTCCAGCTaGGCGGAGCAGAGGTATTTTCAATCCACGCGCCCC +
Preference number: 6 (lower is better)
Translates to: VPRRAARLRSSS*AEQRYFQSTRP
Trigger: GGGGCGCGTGGATTGAAAATACCTCTGCTCCGCTCAGCTGGAGCTTCGGAGCCGCGCTGCCCGCCTAGGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000547140.1
CDS GCA 72 bp GGCCCCCGAGCCCCAGCACTGGCAACGGCGGCGAGCTaGTGCTACACGAGCCGTCTAGATTGGTCTCGCAAT +
Preference number: 6 (lower is better)
Translates to: GPRAPALATAAS*CYTSRLDWSRN
Trigger: ATTGCGAGACCAATCTAGACGGCTCGTGTAGCAGCAGCTCGCCGCCGTTGCCAGTGCTGGGGCTCGGGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS CAA 72 bp CCCAGCTCCAGCTGCTCGTTGAGCCACGCCACCGTCTaGCTGATCGCCATTTCCGACGCGAAGGGCACGGGT +
Preference number: 6 (lower is better)
Translates to: PSSSCSLSHATV*LIAISDAKGTG
Trigger: ACCCGTGCCCTTCGCGTCGGAAATGGCGATCAGCAAGACGGTGGCGTGGCTCAACGAGCAGCTGGAGCTGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000548755.1
CDS CAA 90 bp CGCTCGTTGCCCAGCTCCAGCTGCTCGTTGAGCCACGCCACCGTCTaGCTGATCGCCATTTCCGACGCGAAGGGCACGGGTCTGAGCGTA +
Preference number: 6 (lower is better)
Translates to: RSLPSSSCSLSHATV*LIAISDAKGTGLSV
Trigger: TACGCTCAGACCCGTGCCCTTCGCGTCGGAAATGGCGATCAGCAAGACGGTGGCGTGGCTCAACGAGCAGCTGGAGCTGGGCAACGAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000548755.1
CDS GCA 72 bp CCGACTCGCCGCCCGTATTCTCGTTCCAGTCGCTGCTaGTCTCGTCGTAGAGCACCACTGTGTCGGTGCCAC +
Preference number: 6 (lower is better)
Translates to: PTRRPYSRSSRC*SRRRAPLCRCH
Trigger: GTGGCACCGACACAGTGGTGCTCTACGACGAGAGCAGCAGCGACTGGAACGAGAATACGGGCGGCGAGTCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000548755.1
CDS GCA 72 bp GCACCGACTCGCCGCCCGTATTCTCGTTCCAGTCGCTaGTGCTCTCGTCGTAGAGCACCACTGTGTCGGTGC +
Preference number: 6 (lower is better)
Translates to: APTRRPYSRSSR*CSRRRAPLCRC
Trigger: GCACCGACACAGTGGTGCTCTACGACGAGAGCAGCAGCGACTGGAACGAGAATACGGGCGGCGAGTCGGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000548755.1
CDS CAA 90 bp CAGTCCATCAGCAGCAGCCGCTCGTTGCCCAGCTCCAGCTGCTCGTaGAGCCACGCCACCGTCTTGCTGATCGCCATTTCCGACGCGAAG +
Preference number: 6 (lower is better)
Translates to: QSISSSRSLPSSSCS*SHATVLLIAISDAK
Trigger: CTTCGCGTCGGAAATGGCGATCAGCAAGACGGTGGCGTGGCTCAACGAGCAGCTGGAGCTGGGCAACGAGCGGCTGCTGCTGATGGACTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000548755.1
CDS CCA 72 bp ATTCCGCCTCGCCTTACCCAAGCCGAGGCTAGCGGTTaGGGCAGACGAGACAGAAGTAAAGCCGGAGGTTCT +
Preference number: 6 (lower is better)
Translates to: IPPRLTQAEASG*GRRDRSKAGGS
Trigger: AGAACCTCCGGCTTTACTTCTGTCTCGTCTGCCCCAACCGCTAGCCTCGGCTTGGGTAAGGCGAGGCGGAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS CAA 90 bp GGAAGGAAGGCTGGCTGTTGGACAGCGGACTACCATCCGAGTCTGTaGCACTATTGGGGTCTCGGTCAAGGTCAGACTCGATGTCCGAGG +
Preference number: 6 (lower is better)
Translates to: GRKAGCWTADYHPSL*HYWGLGQGQTRCPR
Trigger: CCTCGGACATCGAGTCTGACCTTGACCGAGACCCCAATAGTGCAACAGACTCGGATGGTAGTCCGCTGTCCAACAGCCAGCCTTCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS GCA 72 bp TGCCAGCCAAGCAATGTACCAAGACACCACAGTTCTTaGCCCGGGCTTCATCTTCCAGGTAGAACGCCCGGC +
Preference number: 6 (lower is better)
Translates to: CQPSNVPRHHSS*PGLHLPGRTPG
Trigger: GCCGGGCGTTCTACCTGGAAGATGAAGCCCGGGGCAAGAACTGTGGTGTCTTGGTACATTGCTTGGCTGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000308385.6
CDS CAA 72 bp GGGGTGGTAAAATACAGCTGCTGTGCTGGAACCCTGTaGTCACATGGGCTGCTGAGTCCCAGCGTCCTCTCG +
Preference number: 6 (lower is better)
Translates to: GVVKYSCCAGTL*SHGLLSPSVLS
Trigger: CGAGAGGACGCTGGGACTCAGCAGCCCATGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTTACCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CAA 90 bp TGGTTGGAAGGGGTGGTAAAATACAGCTGCTGTGCTGGAACCCTGTaGTCACATGGGCTGCTGAGTCCCAGCGTCCTCTCGAAGTCCAGC +
Preference number: 6 (lower is better)
Translates to: WLEGVVKYSCCAGTL*SHGLLSPSVLSKSS
Trigger: GCTGGACTTCGAGAGGACGCTGGGACTCAGCAGCCCATGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTTACCACCCCTTCCAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS GCA 72 bp GGCAGACGAGACAGAAGTAAAGCCGGAGGTTCTCTCTaGACCCAGCTGCAGCCGCTGGCTCTTAGTGTCAAT +
Preference number: 6 (lower is better)
Translates to: GRRDRSKAGGSL*TQLQPLALSVN
Trigger: ATTGACACTAAGAGCCAGCGGCTGCAGCTGGGTGCAGAGAGAACCTCCGGCTTTACTTCTGTCTCGTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS GCA 72 bp AAAAGTCTAGCGGCTTCTAATCCCTCCCTCCAAGGCTaGACCTCAAATCTACCCGGGCGTCTTTCTCCCCGG +
Preference number: 6 (lower is better)
Translates to: KSLAASNPSLQG*TSNLPGRLSPR
Trigger: CCGGGGAGAAAGACGCCCGGGTAGATTTGAGGTGCAGCCTTGGAGGGAGGGATTAGAAGCCGCTAGACTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000279488.8
CDS CCA 72 bp GCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTaGGGTCTTTCACGTAGATTGCAGAGAGTCCACCTG +
Preference number: 6 (lower is better)
Translates to: AEGPDTFQQGGV*GLSRRLQRVHL
Trigger: CAGGTGGACTCTCTGCAATCTACGTGAAAGACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CCA 72 bp TGGACAGCGGACTACCATCCGAGTCTGTTGCACTATTaGGGTCTCGGTCAAGGTCAGACTCGATGTCCGAGG +
Preference number: 6 (lower is better)
Translates to: WTADYHPSLLHY*GLGQGQTRCPR
Trigger: CCTCGGACATCGAGTCTGACCTTGACCGAGACCCCAATAGTGCAACAGACTCGGATGGTAGTCCGCTGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS GCA 72 bp CTGGCTGTTGGACAGCGGACTACCATCCGAGTCTGTTaGACTATTGGGGTCTCGGTCAAGGTCAGACTCGAT +
Preference number: 6 (lower is better)
Translates to: LAVGQRTTIRVC*TIGVSVKVRLD
Trigger: ATCGAGTCTGACCTTGACCGAGACCCCAATAGTGCAACAGACTCGGATGGTAGTCCGCTGTCCAACAGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS CCA 72 bp AAAATACAGCTGCTGTGCTGGAACCCTGTTGTCACATaGGCTGCTGAGTCCCAGCGTCCTCTCGAAGTCCAG +
Preference number: 6 (lower is better)
Translates to: KIQLLCWNPVVT*AAESQRPLEVQ
Trigger: CTGGACTTCGAGAGGACGCTGGGACTCAGCAGCCCATGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CCA 72 bp CTGGTTGGAAGGGGTGGTAAAATACAGCTGCTGTGCTaGAACCCTGTTGTCACATGGGCTGCTGAGTCCCAG +
Preference number: 6 (lower is better)
Translates to: LVGRGGKIQLLC*NPVVTWAAESQ
Trigger: CTGGGACTCAGCAGCCCATGTGACAACAGGGTTCCAGCACAGCAGCTGTATTTTACCACCCCTTCCAACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CCA 72 bp AGGGCAAGATCTCCACTGGGAAGGAAGGCTGGCTGTTaGACAGCGGACTACCATCCGAGTCTGTTGCACTAT +
Preference number: 6 (lower is better)
Translates to: RARSPLGRKAGC*TADYHPSLLHY
Trigger: ATAGTGCAACAGACTCGGATGGTAGTCCGCTGTCCAACAGCCAGCCTTCCTTCCCAGTGGAGATCTTGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS CAA 90 bp AAATCTACCCGGGCGTCTTTCTCCCCGGATTATTTAAGACTCGATTaGCTATCTCTTGGACTCAGCCTCGCACACCCCCTGCGCGAGGCA +
Preference number: 6 (lower is better)
Translates to: KSTRASFSPDYLRLD*LSLGLSLAHPLREA
Trigger: TGCCTCGCGCAGGGGGTGTGCGAGGCTGAGTCCAAGAGATAGCAAATCGAGTCTTAAATAATCCGGGGAGAAAGACGCCCGGGTAGATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000548755.1
CDS GCA 72 bp CTGCTGCTACACGAGCCGTCTAGATTGGTCTCGCAATaGAGGGAGAACTCGGCTTGGAACTTACTGAAGCCA +
Preference number: 6 (lower is better)
Translates to: LLLHEPSRLVSQ*RENSAWNLLKP
Trigger: TGGCTTCAGTAAGTTCCAAGCCGAGTTCTCCCTGCATTGCGAGACCAATCTAGACGGCTCGTGTAGCAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS GCA 72 bp TCCAGCAAGGAGGGGTGTGGGGTCTTTCACGTAGATTaGAGAGAGTCCACCTGGTATACATTCTGGTTGGAA +
Preference number: 6 (lower is better)
Translates to: SSKEGCGVFHVD*RESTWYTFWLE
Trigger: TTCCAACCAGAATGTATACCAGGTGGACTCTCTGCAATCTACGTGAAAGACCCCACACCCCTCCTTGCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CAA 72 bp TTCCAGCAAGGAGGGGTGTGGGGTCTTTCACGTAGATaGCAGAGAGTCCACCTGGTATACATTCTGGTTGGA +
Preference number: 6 (lower is better)
Translates to: FQQGGVWGLSRR*QRVHLVYILVG
Trigger: TCCAACCAGAATGTATACCAGGTGGACTCTCTGCAATCTACGTGAAAGACCCCACACCCCTCCTTGCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CAA 72 bp ATGCCAGCCAAGCAATGTACCAAGACACCACAGTTCTaGCCCCGGGCTTCATCTATGAAAGAAATGGCCTCA +
Preference number: 6 (lower is better)
Translates to: MPAKQCTKTPQF*PRASSMKEMAS
Trigger: TGAGGCCATTTCTTTCATAGATGAAGCCCGGGGCAAGAACTGTGGTGTCTTGGTACATTGCTTGGCTGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS CAA 90 bp GTCTTTCACGTAGATTGCAGAGAGTCCACCTGGTATACATTCTGGTaGGAAGGGGTGGTAAAATACAGCTGCTGTGCTGGAACCCTGTTG +
Preference number: 6 (lower is better)
Translates to: VFHVDCRESTWYTFW*EGVVKYSCCAGTLL
Trigger: CAACAGGGTTCCAGCACAGCAGCTGTATTTTACCACCCCTTCCAACCAGAATGTATACCAGGTGGACTCTCTGCAATCTACGTGAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS TCA 72 bp AGCCGCTGGCTCTTAGTGTCAATGAATCTCTCTCAATaGAGCTGCCCAGATAGTTTTTGTTCCTCCCCAGTG +
Preference number: 6 (lower is better)
Translates to: SRWLLVSMNLSQ*SCPDSFCSSPV
Trigger: CACTGGGGAGGAACAAAAACTATCTGGGCAGCTTCATTGAGAGAGATTCATTGACACTAAGAGCCAGCGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000279488.8
ENST00000308385.6
CDS CCA 72 bp CACGTAGATTGCAGAGAGTCCACCTGGTATACATTCTaGTTGGAAGGGGTGGTAAAATACAGCTGCTGTGCT +
Preference number: 6 (lower is better)
Translates to: HVDCRESTWYTF*LEGVVKYSCCA
Trigger: AGCACAGCAGCTGTATTTTACCACCCCTTCCAACCAGAATGTATACCAGGTGGACTCTCTGCAATCTACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CAA 72 bp GTAGATTGCAGAGAGTCCACCTGGTATACATTCTGGTaGGAAGGGGTGGTAAAATACAGCTGCTGTGCTGGA +
Preference number: 6 (lower is better)
Translates to: VDCRESTWYTFW*EGVVKYSCCAG
Trigger: TCCAGCACAGCAGCTGTATTTTACCACCCCTTCCAACCAGAATGTATACCAGGTGGACTCTCTGCAATCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000308385.6
ENST00000547291.1
CDS CAA 72 bp AGATTCGGCAAATTGGGGGTGACGTTCAAGATGTACTaGATGCCGAATTCCTCCAACACGTCCAAGTTGGTG +
Preference number: 6 (lower is better)
Translates to: RFGKLGVTFKMY*MPNSSNTSKLV
Trigger: CACCAACTTGGACGTGTTGGAGGAATTCGGCATCAAGTACATCTTGAACGTCACCCCCAATTTGCCGAATCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000279488.8
ENST00000547140.1
ENST00000547291.1
CDS TCA 72 bp GCCACCTGCCAGAACGAGAAAAGCAATCATCTAACCTaGGAAGCCGTAGTAGTTTTCACAGCTTGTAAGAAC +
Preference number: 6 (lower is better)
Translates to: ATCQNEKSNHLT*EAVVVFTACKN
Trigger: GTTCTTACAAGCTGTGAAAACTACTACGGCTTCTCAGGTTAGATGATTGCTTTTCTCGTTCTGGCAGGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000547291.1