Pregenerated sensors for DNAJB9 (Homo sapiens)
Ensembl gene IDs: ENSG00000128590Ensembl transcript IDs: ENST00000249356.4, ENST00000465725.1, ENST00000491582.1
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTTCATGTACACTCTGCAACGCAAGTCACAGATGTCATAGAACATaGAACTTTGAATTAGTAAAGGTTTCACTGCAAAAATCATTAGGT | + |
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Preference number: 1 (lower is better) Translates to: VSCTLCNASHRCHRT*NFELVKVSLQKSLG Trigger: ACCTAATGATTTTTGCAGTGAAACCTTTACTAATTCAAAGTTGCATGTTCTATGACATCTGTGACTTGCGTTGCAGAGTGTACATGAAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| 3UTR TCA 90 bp | ATAGTAAGGTTGCACAGAAATTACTGGCTGGTTTTACAAACAGAATaGGGTATCAGTCAATCTCTAGATAAAGATGAGAGAGAGGATAAA | + |
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Preference number: 1 (lower is better) Translates to: IVRLHRNYWLVLQTE*GISQSLDKDEREDK Trigger: TTTATCCTCTCTCTCATCTTTATCTAGAGATTGACTGATACCTCATTCTGTTTGTAAAACCAGCCAGTAATTTCTGTGCAACCTTACTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| 3UTR-3UTR TCA 90 bp | AAAGAACTGGCAGCAGGAACACTTGCTCCTAGGAAACAAATACAACAAAATTATTTTTTCCAGCCTAAATaGCTATGGGCAATAAAACCA | + |
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Preference number: 2 (lower is better) Translates to: KELAAGTLAPRKQIQQNYFFQPK*LWAIKP Trigger: TGGTTTTATTGCCCATAGTCATTTAGGCTGGAAAAA...ATAATTTTGTTGTATTTGTTTCCTAGGAGCAAGTGTTCCTGCTGCCAGTTCTTT 37% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| 3UTR-3UTR CCA 90 bp | AAAGAACTGGCAGCAGGAACACTTGCTCCTAGGAAACAAATACAACAAAATTATTTGCACAGAAATTACTaGCTGGTTTTACAAACAGAA | + |
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Preference number: 2 (lower is better) Translates to: KELAAGTLAPRKQIQQNYLHRNY*LVLQTE Trigger: TTCTGTTTGTAAAACCAGCCAGTAATTTCTGTGCAA...ATAATTTTGTTGTATTTGTTTCCTAGGAGCAAGTGTTCCTGCTGCCAGTTCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| 3UTR-3UTR CAA 90 bp | ATGAATATAGCCTGTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCGGAAGAGTCAACCAGTaGGATTTAGTGAGAATAGAA | + |
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Preference number: 3 (lower is better) Translates to: MNIACDQHMSHSLYALYTGRVNQ*DLVRIE Trigger: TTCTATTCTCACTAAATCCAACTGGTTGACTCTTCC...GGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCACAGGCTATATTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| 3UTR TCA 72 bp | TTGCACAGAAATTACTGGCTGGTTTTACAAACAGAATaGGGTATCAGTCAATCTCTAGATAAAGATGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: LHRNYWLVLQTE*GISQSLDKDER Trigger: TCTCTCATCTTTATCTAGAGATTGACTGATACCTCATTCTGTTTGTAAAACCAGCCAGTAATTTCTGTGCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | CAGTTCTACTGTAGAAAGGCACAGCGCTGTGGTAAATATCAAACCATTCCTTTCAGGCGCTGGCGACCCTaGCGATCGGCTCGGGTCGGC | + |
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Preference number: 4 (lower is better) Translates to: QFYCRKAQRCGKYQTIPFRRWRP*RSARVG Trigger: GCCGACCCGAGCCGATCGTCAGGGTCGCCAGCGCCT...GAAAGGAATGGTTTGATATTTACCACAGCGCTGTGCCTTTCTACAGTAGAACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR GCA 90 bp | GTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCTCCAGAGTTGCATCCCTCCGACTACTGCTaGTCCTCCACAGAGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: VISICPIAYMPSIPPELHPSDYC*SSTELR Trigger: CCTCAGCTCTGTGGAGGAGCAGCAGTAGTCGGAGGG...ATGCAACTCTGGAGGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR GCA 90 bp | ATGAATATAGCCTGTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCGCACCCTCCGACTACTaGTGCTCCTCCACAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: MNIACDQHMSHSLYALYTAPSDY*CSSTEL Trigger: CAGCTCTGTGGAGGAGCAGCAGTAGTCGGAGGGTGC...GGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCACAGGCTATATTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | CAGTTCTACTGTAGAAAGGCACAGCGCTGTGGTAAATATCAAACCATTCCTTTCTGTGAAAGGCCTTCTTaGTTTGGCGCTCTGATGCCG | + |
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Preference number: 4 (lower is better) Translates to: QFYCRKAQRCGKYQTIPFCERPS*FGALMP Trigger: CGGCATCAGAGCGCCAAATCAAGAAGGCCTTTCACA...GAAAGGAATGGTTTGATATTTACCACAGCGCTGTGCCTTTCTACAGTAGAACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | AGCATATGTCCCATAGCTTATATGCCCTCTATACCTCCAGAGTTGCATAATAAACTTGATTTGGCGCTCTaGTGCCGATTTTGGCACACC | + |
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Preference number: 4 (lower is better) Translates to: SICPIAYMPSIPPELHNKLDLAL*CRFWHT Trigger: GGTGTGCCAAAATCGGCATCAGAGCGCCAAATCAAG...TTTATTATGCAACTCTGGAGGTATAGAGGGCATATAAGCTATGGGACATATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | CCCAGTTCTACTGTAGAAAGGCACAGCGCTGTGGTAAATATCAAACCATTCCTTTTCATGGCCAACTTGTaGAAGGCCTTCTTGATTTGG | + |
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Preference number: 4 (lower is better) Translates to: PSSTVERHSAVVNIKPFLFMANL*KAFLIW Trigger: CCAAATCAAGAAGGCCTTTCACAAGTTGGCCATGAA...AAGGAATGGTTTGATATTTACCACAGCGCTGTGCCTTTCTACAGTAGAACTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | TGTACACTCTGCAACGCAAGTCACAGATGTCATAGAACATGCAACTTTGAATTATTCCTCTTCGTTGAGTaGCAGTCCTGCAGTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: CTLCNASHRCHRTCNFELFLFVE*QSCSAC Trigger: GCAAGCACTGCAGGACTGTCACTCAACGAAGAGGAA...TAATTCAAAGTTGCATGTTCTATGACATCTGTGACTTGCGTTGCAGAGTGTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CCA 90 bp | AGTAACTTCATGAATATAGCCTGTGATCAGCATATGTCCCATAGCTTATATGCCGATGCCTTTGTCTACTaGAACCACCATCCTGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: SNFMNIACDQHMSHSLYADAFVY*NHHPGV Trigger: CACGCCAGGATGGTGGTTCCAGTAGACAAAGGCATC...GGCATATAAGCTATGGGACATATGCTGATCACAGGCTATATTCATGAAGTTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | GTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCTCCAGAGTTGCATTGCAAAGATGAAAATTaGCTGGGGAGTAGCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: VISICPIAYMPSIPPELHCKDEN*LGSSHF Trigger: GAAATGGCTACTCCCCAGTCAATTTTCATCTTTGCA...ATGCAACTCTGGAGGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR GCA 90 bp | GTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCTCCAGAGTTGCATGTTTCATGTACACTCTaGAACGCAAGTCACAGATGT | + |
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Preference number: 4 (lower is better) Translates to: VISICPIAYMPSIPPELHVSCTL*NASHRC Trigger: ACATCTGTGACTTGCGTTGCAGAGTGTACATGAAAC...ATGCAACTCTGGAGGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | CAGTTCTACTGTAGAAAGGCACAGCGCTGTGGTAAATATCAAACCATTCCTTTCGTCTGTACTGTATGCTaGTTGGTAGAGTCAAAACCA | + |
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Preference number: 4 (lower is better) Translates to: QFYCRKAQRCGKYQTIPFVCTVC*LVESKP Trigger: TGGTTTTGACTCTACCAATCAGCATACAGTACAGAC...GAAAGGAATGGTTTGATATTTACCACAGCGCTGTGCCTTTCTACAGTAGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | CTCTGCAACGCAAGTCACAGATGTCATAGAACATGCAACTTTGAATTAGTAAAGATATTTCCTCTTCGTTaGGTGACAGTCCTGCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: LCNASHRCHRTCNFELVKIFPLR*VTVLQC Trigger: GCACTGCAGGACTGTCACTCAACGAAGAGGAAATAT...CTTTACTAATTCAAAGTTGCATGTTCTATGACATCTGTGACTTGCGTTGCAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CCA 90 bp | CATGTACACTCTGCAACGCAAGTCACAGATGTCATAGAACATGCAACTTTGAATAAGGCCTTCTTGATTTaGCGCTCTGATGCCGATTTT | + |
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Preference number: 4 (lower is better) Translates to: HVHSATQVTDVIEHATLNKAFLI*RSDADF Trigger: AAAATCGGCATCAGAGCGCCAAATCAAGAAGGCCTT...ATTCAAAGTTGCATGTTCTATGACATCTGTGACTTGCGTTGCAGAGTGTACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | ATGAATATAGCCTGTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCTCGTCTATTAGCATCTaGGAGTGTTTCATATGCTTC | + |
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Preference number: 4 (lower is better) Translates to: MNIACDQHMSHSLYALYTSSISI*ECFICF Trigger: GAAGCATATGAAACACTCTCAGATGCTAATAGACGA...GGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCACAGGCTATATTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | CAGTTCTACTGTAGAAAGGCACAGCGCTGTGGTAAATATCAAACCATTCCTTTCTGCTTGCTAGATCCATaGAATCTATTTTCAGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: QFYCRKAQRCGKYQTIPFCLLDP*NLFSVC Trigger: ACAGACTGAAAATAGATTTCATGGATCTAGCAAGCA...GAAAGGAATGGTTTGATATTTACCACAGCGCTGTGCCTTTCTACAGTAGAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CCA 90 bp | GTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCTCCAGAGTTGCATACAGAAATTACTGGCTaGTTTTACAAACAGAATGAG | + |
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Preference number: 4 (lower is better) Translates to: VISICPIAYMPSIPPELHTEITG*FYKQNE Trigger: CTCATTCTGTTTGTAAAACCAGCCAGTAATTTCTGT...ATGCAACTCTGGAGGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR GCA 90 bp | AAAGAACTGGCAGCAGGAACACTTGCTCCTAGGAAACAAATACAACAAAATTATAATCTCTCTGAATTTTaGTTCAGCATCCGGGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: KELAAGTLAPRKQIQQNYNLSEF*FSIRAL Trigger: AAGAGCCCGGATGCTGAAGCAAAATTCAGAGAGATT...ATAATTTTGTTGTATTTGTTTCCTAGGAGCAAGTGTTCCTGCTGCCAGTTCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CCA 90 bp | AGTAACTTCATGAATATAGCCTGTGATCAGCATATGTCCCATAGCTTATATGCCTTATTTTTGTCAGGGTaGTACTTCATGGCCAACTTG | + |
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Preference number: 4 (lower is better) Translates to: SNFMNIACDQHMSHSLYALFLSG*YFMANL Trigger: CAAGTTGGCCATGAAGTACCACCCTGACAAAAATAA...GGCATATAAGCTATGGGACATATGCTGATCACAGGCTATATTCATGAAGTTACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR TCA 90 bp | CTCTGCAACGCAAGTCACAGATGTCATAGAACATGCAACTTTGAATTAGTAAAGGAAAATTCTTGGAAATaGTGCCTTTGTCTACTGGAA | + |
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Preference number: 4 (lower is better) Translates to: LCNASHRCHRTCNFELVKENSWK*CLCLLE Trigger: TTCCAGTAGACAAAGGCATCATTTCCAAGAATTTTC...CTTTACTAATTCAAAGTTGCATGTTCTATGACATCTGTGACTTGCGTTGCAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CCA 90 bp | ATGAATATAGCCTGTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCTTGCACAGAAATTACTaGCTGGTTTTACAAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: MNIACDQHMSHSLYALYTLHRNY*LVLQTE Trigger: TTCTGTTTGTAAAACCAGCCAGTAATTTCTGTGCAA...GGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCACAGGCTATATTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CCA 90 bp | AAAGAACTGGCAGCAGGAACACTTGCTCCTAGGAAACAAATACAACAAAATTATAAGATGAAAATTGACTaGGGAGTAGCCATTTCTAAT | + |
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Preference number: 4 (lower is better) Translates to: KELAAGTLAPRKQIQQNYKMKID*GVAISN Trigger: ATTAGAAATGGCTACTCCCCAGTCAATTTTCATCTT...ATAATTTTGTTGTATTTGTTTCCTAGGAGCAAGTGTTCCTGCTGCCAGTTCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS TCA 90 bp | TCTAATATCCTGCACCCTCCGACTACTGCTGCTCCTCCACAGAGCTaGGGCGCTGGCGACCCTGACGATCGGCTCGGGTCGGCAGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: SNILHPPTTAAPPQS*GAGDPDDRLGSAAW Trigger: CCAAGCTGCCGACCCGAGCCGATCGTCAGGGTCGCCAGCGCCTCAGCTCTGTGGAGGAGCAGCAGTAGTCGGAGGGTGCAGGATATTAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000249356.4 ENST00000491582.1 |
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| CDS-3UTR CAA 90 bp | GTGATCAGCATATGTCCCATAGCTTATATGCCCTCTATACCTCCAGAGTTGCATTTGGAAATGATGCCTTaGTCTACTGGAACCACCATC | + |
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Preference number: 5 (lower is better) Translates to: VISICPIAYMPSIPPELHLEMMP*STGTTI Trigger: GATGGTGGTTCCAGTAGACAAAGGCATCATTTCCAA...ATGCAACTCTGGAGGTATAGAGGGCATATAAGCTATGGGACATATGCTGATCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CAA 90 bp | CAGTTCTACTGTAGAAAGGCACAGCGCTGTGGTAAATATCAAACCATTCCTTTCCATATTTCCTCTTCGTaGAGTGACAGTCCTGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: QFYCRKAQRCGKYQTIPFHISSS*SDSPAV Trigger: CACTGCAGGACTGTCACTCAACGAAGAGGAAATATG...GAAAGGAATGGTTTGATATTTACCACAGCGCTGTGCCTTTCTACAGTAGAACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CAA 90 bp | TGTACACTCTGCAACGCAAGTCACAGATGTCATAGAACATGCAACTTTGAATTATCCGGGCTCTTATTTTaGTCAGGGTGGTACTTCATG | + |
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Preference number: 5 (lower is better) Translates to: CTLCNASHRCHRTCNFELSGLLF*SGWYFM Trigger: CATGAAGTACCACCCTGACAAAAATAAGAGCCCGGA...TAATTCAAAGTTGCATGTTCTATGACATCTGTGACTTGCGTTGCAGAGTGTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CAA 90 bp | CAGTTCTACTGTAGAAAGGCACAGCGCTGTGGTAAATATCAAACCATTCCTTTCTTGCACATAGTAAGGTaGCACAGAAATTACTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: QFYCRKAQRCGKYQTIPFLHIVR*HRNYWL Trigger: CAGCCAGTAATTTCTGTGCAACCTTACTATGTGCAA...GAAAGGAATGGTTTGATATTTACCACAGCGCTGTGCCTTTCTACAGTAGAACTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CAA 90 bp | AGCATATGTCCCATAGCTTATATGCCCTCTATACCTCCAGAGTTGCATAATAAAGCTCTGATGCCGATTTaGGCACACCTAAGATATCAT | + |
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Preference number: 5 (lower is better) Translates to: SICPIAYMPSIPPELHNKALMPI*AHLRYH Trigger: ATGATATCTTAGGTGTGCCAAAATCGGCATCAGAGC...TTTATTATGCAACTCTGGAGGTATAGAGGGCATATAAGCTATGGGACATATGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CAA 90 bp | AAAGAACTGGCAGCAGGAACACTTGCTCCTAGGAAACAAATACAACAAAATTATTGGCAGCAGGAACACTaGCTCCTAGGAAACAAATAC | + |
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Preference number: 5 (lower is better) Translates to: KELAAGTLAPRKQIQQNYWQQEH*LLGNKY Trigger: GTATTTGTTTCCTAGGAGCAAGTGTTCCTGCTGCCA...ATAATTTTGTTGTATTTGTTTCCTAGGAGCAAGTGTTCCTGCTGCCAGTTCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CAA 90 bp | CATGTACACTCTGCAACGCAAGTCACAGATGTCATAGAACATGCAACTTTGAATACTTCCACTACCTCTTaGTCCTTTACCACTAGTAAA | + |
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Preference number: 5 (lower is better) Translates to: HVHSATQVTDVIEHATLNTSTTS*SFTTSK Trigger: TTTACTAGTGGTAAAGGACAAAGAGGTAGTGGAAGT...ATTCAAAGTTGCATGTTCTATGACATCTGTGACTTGCGTTGCAGAGTGTACATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS-3UTR CAA 90 bp | AAAGAACTGGCAGCAGGAACACTTGCTCCTAGGAAACAAATACAACAAAATTATCTATCAGTTTTCAGGTaGGTCAAAAGTAACTTCATG | + |
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Preference number: 5 (lower is better) Translates to: KELAAGTLAPRKQIQQNYLSVFR*VKSNFM Trigger: CATGAAGTTACTTTTGACCAACCTGAAAACTGATAG...ATAATTTTGTTGTATTTGTTTCCTAGGAGCAAGTGTTCCTGCTGCCAGTTCTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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| CDS TCA 72 bp | TGCTGCTCCTCCACAGAGCTGAGGCGCTGGCGACCCTaGCGATCGGCTCGGGTCGGCAGCTTGGGCCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: CCSSTELRRWRP*RSARVGSLGPA Trigger: GGCCGGGCCCAAGCTGCCGACCCGAGCCGATCGTCAGGGTCGCCAGCGCCTCAGCTCTGTGGAGGAGCAGCA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000249356.4 ENST00000491582.1 |
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| CDS TCA 72 bp | CTGCACCCTCCGACTACTGCTGCTCCTCCACAGAGCTaGGGCGCTGGCGACCCTGACGATCGGCTCGGGTCG | + |
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Preference number: 6 (lower is better) Translates to: LHPPTTAAPPQS*GAGDPDDRLGS Trigger: CGACCCGAGCCGATCGTCAGGGTCGCCAGCGCCTCAGCTCTGTGGAGGAGCAGCAGTAGTCGGAGGGTGCAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000249356.4 ENST00000491582.1 |
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| CDS TCA 72 bp | GGTGGTACTTCATGGCCAACTTGTGAAAGGCCTTCTTaGTTTGGCGCTCTGATGCCGATTTTGGCACACCTA | + |
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Preference number: 6 (lower is better) Translates to: GGTSWPTCERPS*FGALMPILAHL Trigger: TAGGTGTGCCAAAATCGGCATCAGAGCGCCAAATCAAGAAGGCCTTTCACAAGTTGGCCATGAAGTACCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000249356.4 ENST00000465725.1 ENST00000491582.1 |
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| CDS CAA 72 bp | ACAGTCAGTGTATGTAGTAACCATATTTCCTCTTCGTaGAGTGACAGTCCTGCAGTGCTTGCTAGATCCATG | + |
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Preference number: 6 (lower is better) Translates to: TVSVCSNHISSS*SDSPAVLARSM Trigger: CATGGATCTAGCAAGCACTGCAGGACTGTCACTCAACGAAGAGGAAATATGGTTACTACATACACTGACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000249356.4 |
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