Pregenerated sensors for DNAJB5-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000281491Ensembl transcript IDs: ENST00000626300.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGTCCAGGGACTACACCTCCCAGAGTGCACTGTTCTCTCCCTCTTaGCCCCCAATGAAGAAAGGAAAGAATGCACGGCCGCACGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: RSRDYTSQSALFSPS*PPMKKGKNARPHGQ Trigger: TTGGCCGTGCGGCCGTGCATTCTTTCCTTTCTTCATTGGGGGGCAAGAGGGAGAGAACAGTGCACTCTGGGAGGTGTAGTCCCTGGACCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS GCA 90 bp | TATCAGGTGAGATGCTCAGAGTCTGATCACAGGAGGGAGGCCATCTaGAGCCAAGGTGATGGGTCAACGTGGCATTCCTTTTGGCCCCGG | + |
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Preference number: 5 (lower is better) Translates to: YQVRCSESDHRREAI*SQGDGSTWHSFWPR Trigger: CCGGGGCCAAAAGGAATGCCACGTTGACCCATCACCTTGGCTGCAGATGGCCTCCCTCCTGTGATCAGACTCTGAGCATCTCACCTGATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS TCA 90 bp | ATCCCTAACATTGCTCTCTCATCCCAAGGCAAGAAATCACCCCTCTaGACCCTTCTGGTGCTGGTCAGCATAGGTTCAGAACACGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: IPNIALSSQGKKSPL*TLLVLVSIGSEHAG Trigger: CCCTGCGTGTTCTGAACCTATGCTGACCAGCACCAGAAGGGTTCAGAGGGGTGATTTCTTGCCTTGGGATGAGAGAGCAATGTTAGGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS CAA 90 bp | GCCGCACGGCCAACTGGTGGGTACAGTTTTCCTTTAAGGCTGCCTTaGACGTCGCAAGGGTTCCAGAAGGTTCTCCTGGGATTCGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: AARPTGGYSFPLRLP*TSQGFQKVLLGFEQ Trigger: CTGCTCGAATCCCAGGAGAACCTTCTGGAACCCTTGCGACGTCAAAGGCAGCCTTAAAGGAAAACTGTACCCACCAGTTGGCCGTGCGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS CCA 72 bp | CAAGGGTTCCAGAAGGTTCTCCTGGGATTCGAGCAGTaGCCAGTACGTCCCACCTTCTCAACCCGGAGATTG | + |
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Preference number: 6 (lower is better) Translates to: QGFQKVLLGFEQ*PVRPTFSTRRL Trigger: CAATCTCCGGGTTGAGAAGGTGGGACGTACTGGCCACTGCTCGAATCCCAGGAGAACCTTCTGGAACCCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS TCA 72 bp | TCTGGGCCTGAGTGTCAGCATGAAGCATGTATCAGGTaGGATGCTCAGAGTCTGATCACAGGAGGGAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: SGPECQHEACIR*DAQSLITGGRP Trigger: TGGCCTCCCTCCTGTGATCAGACTCTGAGCATCTCACCTGATACATGCTTCATGCTGACACTCAGGCCCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS GCA 72 bp | AGATGCTCAGAGTCTGATCACAGGAGGGAGGCCATCTaGAGCCAAGGTGATGGGTCAACGTGGCATTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: RCSESDHRREAI*SQGDGSTWHSF Trigger: AAAGGAATGCCACGTTGACCCATCACCTTGGCTGCAGATGGCCTCCCTCCTGTGATCAGACTCTGAGCATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS CCA 72 bp | AGAAAGGAAAGAATGCACGGCCGCACGGCCAACTGGTaGGTACAGTTTTCCTTTAAGGCTGCCTTTGACGTC | + |
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Preference number: 6 (lower is better) Translates to: RKERMHGRTANW*VQFSFKAAFDV Trigger: GACGTCAAAGGCAGCCTTAAAGGAAAACTGTACCCACCAGTTGGCCGTGCGGCCGTGCATTCTTTCCTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS CAA 72 bp | CTGATGTTGCACGCCCTCTGCTGGTCATCCCTAACATaGCTCTCTCATCCCAAGGCAAGAAATCACCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: LMLHALCWSSLT*LSHPKARNHPS Trigger: AGAGGGGTGATTTCTTGCCTTGGGATGAGAGAGCAATGTTAGGGATGACCAGCAGAGGGCGTGCAACATCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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| CDS TCA 72 bp | ATTGCTCTCTCATCCCAAGGCAAGAAATCACCCCTCTaGACCCTTCTGGTGCTGGTCAGCATAGGTTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: IALSSQGKKSPL*TLLVLVSIGSE Trigger: TTCTGAACCTATGCTGACCAGCACCAGAAGGGTTCAGAGGGGTGATTTCTTGCCTTGGGATGAGAGAGCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626300.1 |
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