Pregenerated sensors for DNAJA2-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000261173Ensembl transcript IDs: ENST00000562536.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTCTGCTTAGATTCCTCATGGCCTCTCTGTGCAGCACTCCCTTCTTaGGGATATGGAACAGGACCCCTTCAGAAATGGAAGTCTCATGAC | + |
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Preference number: 5 (lower is better) Translates to: VCLDSSWPLCAALPS*GYGTGPLQKWKSHD Trigger: GTCATGAGACTTCCATTTCTGAAGGGGTCCTGTTCCATATCCTCAAGAAGGGAGTGCTGCACAGAGAGGCCATGAGGAATCTAAGCAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562536.1 |
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| CDS CCA 90 bp | GTTCAGCTATCCAGGAACTCCAACTCTGTCTTCTTGGGCCTTTTATaGAGACTTTACTGGACAGGCATAATTGACAACCATGTAAAAATG | + |
|
Preference number: 5 (lower is better) Translates to: VQLSRNSNSVFLGLL*RLYWTGIIDNHVKM Trigger: CATTTTTACATGGTTGTCAATTATGCCTGTCCAGTAAAGTCTCCATAAAAGGCCCAAGAAGACAGAGTTGGAGTTCCTGGATAGCTGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000562536.1 |
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| CDS GCA 72 bp | GGGTCCACCGACGTCCCGGATTCTAATAACGACATCTaGGCGCCAGGCGGGCCTCCTGCGGGAGCCGGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: GSTDVPDSNNDI*APGGPPAGAGA Trigger: GGCCCCGGCTCCCGCAGGAGGCCCGCCTGGCGCGCAGATGTCGTTATTAGAATCCGGGACGTCGGTGGACCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562536.1 |
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| CDS TCA 72 bp | GATTCCTCATGGCCTCTCTGTGCAGCACTCCCTTCTTaGGGATATGGAACAGGACCCCTTCAGAAATGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: DSSWPLCAALPS*GYGTGPLQKWK Trigger: CTTCCATTTCTGAAGGGGTCCTGTTCCATATCCTCAAGAAGGGAGTGCTGCACAGAGAGGCCATGAGGAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562536.1 |
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| CDS CAA 72 bp | AGATTCCTCATGGCCTCTCTGTGCAGCACTCCCTTCTaGAGGATATGGAACAGGACCCCTTCAGAAATGGAA | + |
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Preference number: 6 (lower is better) Translates to: RFLMASLCSTPF*RIWNRTPSEME Trigger: TTCCATTTCTGAAGGGGTCCTGTTCCATATCCTCAAGAAGGGAGTGCTGCACAGAGAGGCCATGAGGAATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562536.1 |
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