RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNAAF4 (Homo sapiens)

Ensembl gene IDs: ENSG00000256061

Ensembl transcript IDs: ENST00000321149.7, ENST00000348518.4, ENST00000448430.6, ENST00000457155.6, ENST00000519017.1, ENST00000522437.1, ENST00000524160.5

Found 186 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTGCCCTGGGCAACCTGCTTAGGTGCCCATAAAAGTAAATTACAGTaGTACTTTTCTGCGCAAGTCACAGGGCCTCCACCTTCCACCTAT +
Preference number: 1 (lower is better)
Translates to: LPWATCLGAHKSKLQ*YFSAQVTGPPPSTY
Trigger: ATAGGTGGAAGGTGGAGGCCCTGTGACTTGCGCAGAAAAGTACCACTGTAATTTACTTTTATGGGCACCTAAGCAGGTTGCCCAGGGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR TCA 90 bp CTCTCTTCTTCTTCAATCTTCATCATGACACTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCAGCTTTTGCTTCTGTAGCTTCTTTT +
Preference number: 1 (lower is better)
Translates to: LSSSSIFIMTLSAYF*SSRFAAAFASVASF
Trigger: AAAAGAAGCTACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAGTGTCATGATGAAGATTGAAGAAGAAGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000522437.1
3UTR CCA 90 bp GGAGATAGTATTAACAACAACAACAACAAAATCTACAAGTTGCCCTaGGCAACCTGCTTAGGTGCCCATAAAAGTAAATTACAGTGGTAC +
Preference number: 1 (lower is better)
Translates to: GDSINNNNNKIYKLP*ATCLGAHKSKLQWY
Trigger: GTACCACTGTAATTTACTTTTATGGGCACCTAAGCAGGTTGCCCAGGGCAACTTGTAGATTTTGTTGTTGTTGTTGTTAATACTATCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR-3UTR GCA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCAGCAGGGGTCACAAGGTaGTCAGTGGGGGAGGTTCTG +
Preference number: 2 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSAGVTR*SVGEVL
Trigger: CAGAACCTCCCCCACTGAGCACCTTGTGACCCCTGC...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000448430.6
3UTR-3UTR TCA 90 bp GCAATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGCAGTGGGGGAGGTTCTaGGCCAGGAGAAGGAATTTC +
Preference number: 2 (lower is better)
Translates to: AIKLFNHLGGGGLSPKRQQWGRF*ARRRNF
Trigger: GAAATTCCTTCTCCTGGCTCAGAACCTCCCCCACTG...CTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTATTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000448430.6
3UTR-3UTR TCA 90 bp ACGTCGTACATGTGCCTTCATTCTTGCATTAGCATTGTCTGTAACAGGTGGCATCTCTTCTGCTACTTGTaGTTCACGAAGAGCTGTTGG +
Preference number: 2 (lower is better)
Translates to: TSYMCLHSCISIVCNRWHLFCYL*FTKSCW
Trigger: CCAACAGCTCTTCGTGAATCACAAGTAGCAGAAGAG...ATGCCACCTGTTACAGACAATGCTAATGCAAGAATGAAGGCACATGTACGACGT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR-3UTR CCA 90 bp TCCACCTATAAAGCTTTCCCCTGTGCTGAGGAAACCTGTAGGTTTCAGAACTGTTTCACGAAGAGCTGTTaGGAATACTCGAGGGGTAAA +
Preference number: 2 (lower is better)
Translates to: STYKAFPCAEETCRFQNCFTKSC*EYSRGK
Trigger: TTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGAA...ACAGTTCTGAAACCTACAGGTTTCCTCAGCACAGGGGAAAGCTTTATAGGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR CAA 90 bp ACTTGTGATTCACGAAGAGCTGTTGGGAATACTCGAGGGGTAAAGTaGATTTTAATACTGCCAACAGAGCGAGGAGCAGGAATACTGTCT +
Preference number: 2 (lower is better)
Translates to: TCDSRRAVGNTRGVK*ILILPTERGAGILS
Trigger: AGACAGTATTCCTGCTCCTCGCTCTGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGAATCACAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR-3UTR GCA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTATCTTCCCGCTTTGCTaGAGCTTTTGCTTCTGTAGC +
Preference number: 2 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFIFPLC*SFCFCS
Trigger: GCTACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGAT...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522437.1
3UTR CAA 90 bp AATGCTGTTCCACGTCGTACATGTGCCTTCATTCTTGCATTAGCATaGTCTGTAACAGGTGGCATCAATAATTCCAGTGCCTTAGAAGAA +
Preference number: 2 (lower is better)
Translates to: NAVPRRTCAFILALA*SVTGGINNSSALEE
Trigger: TTCTTCTAAGGCACTGGAATTATTGATGCCACCTGTTACAGACAATGCTAATGCAAGAATGAAGGCACATGTACGACGTGGAACAGCATT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR-3UTR TCA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTCTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCA +
Preference number: 2 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFLSAYF*SSRFAA
Trigger: TGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAG...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000522437.1
3UTR CAA 90 bp TTTCTTCTTCTTTTAAATCGCAAAGTTCAGCTATGTCAGTATTCATaGCTCTTCGTGCCTCAGCTTGTTTGTGTAGCCACTCCTCCTCTT +
Preference number: 2 (lower is better)
Translates to: FLLLLNRKVQLCQYS*LFVPQLVCVATPPL
Trigger: AAGAGGAGGAGTGGCTACACAAACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAGCTGAACTTTGCGATTTAAAAGAAGAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR-3UTR CCA 90 bp TCCACCTATAAAGCTTTCCCCTGTGCTGAGGAAACCTGTAGGTTTCAGAACTGTATCCTTCAACCATTCTaGGTTCTTTTCTTCTTCTTT +
Preference number: 2 (lower is better)
Translates to: STYKAFPCAEETCRFQNCILQPF*VLFFFF
Trigger: AAAGAAGAAGAAAAGAACCCAGAATGGTTGAAGGAT...ACAGTTCTGAAACCTACAGGTTTCCTCAGCACAGGGGAAAGCTTTATAGGTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR-3UTR TCA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTTCATCTCTTTGTCAATaGGTCACAGAGGAAGTAAGA +
Preference number: 2 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFSSLCQ*VTEEVR
Trigger: TCTTACTTCCTCTGTGACTCATTGACAAAGAGATGA...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522437.1
3UTR-3UTR GCA 90 bp CGTACATGTGCCTTCATTCTTGCATTAGCATTGTCTGTAACAGGTGGCATCAATATATGCATTGATAGCTaGCAAATAGTTTTCCGTTGC +
Preference number: 2 (lower is better)
Translates to: RTCAFILALALSVTGGINICIDS*QIVFRC
Trigger: GCAACGGAAAACTATTTGGCAGCTATCAATGCATAT...ATTGATGCCACCTGTTACAGACAATGCTAATGCAAGAATGAAGGCACATGTACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR CAA 90 bp ACTGAAGGAGATAGTATTAACAACAACAACAACAAAATCTACAAGTaGCCCTGGGCAACCTGCTTAGGTGCCCATAAAAGTAAATTACAG +
Preference number: 2 (lower is better)
Translates to: TEGDSINNNNNKIYK*PWATCLGAHKSKLQ
Trigger: CTGTAATTTACTTTTATGGGCACCTAAGCAGGTTGCCCAGGGCAACTTGTAGATTTTGTTGTTGTTGTTGTTAATACTATCTCCTTCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR-3UTR CAA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTTTTGATCTTCCCGCTTaGCTGCAGCTTTTGCTTCTG +
Preference number: 3 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFFDLPA*LQLLLL
Trigger: CAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAA...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000522437.1
3UTR GCA 72 bp AACAACAACAAAATCTACAAGTTGCCCTGGGCAACCTaGTTAGGTGCCCATAAAAGTAAATTACAGTGGTAC +
Preference number: 3 (lower is better)
Translates to: NNNKIYKLPWAT*LGAHKSKLQWY
Trigger: GTACCACTGTAATTTACTTTTATGGGCACCTAAGCAGGTTGCCCAGGGCAACTTGTAGATTTTGTTGTTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR-3UTR CAA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTCTTTGCATCATCTCTTaGTCAATGAGTCACAGAGGA +
Preference number: 3 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFLCIIS*SMSHRG
Trigger: TCCTCTGTGACTCATTGACAAAGAGATGATGCAAAG...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522437.1
3UTR-3UTR CAA 90 bp GAGGTAAACCTTCTACATACAATTCTAGTTGACAGAATGCTGTTCCACGTCGTAACTCGAGGGGTAAAGTaGATTTTAATACTGCCAACA +
Preference number: 3 (lower is better)
Translates to: EVNLLHTILVDRMLFHVVTRGVK*ILILPT
Trigger: TGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGT...TACGACGTGGAACAGCATTCTGTCAACTAGAATTGTATGTAGAAGGTTTACCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR TCA 72 bp TCTTCAATCTTCATCATGACACTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCAGCTTTTGCTTCTGTA +
Preference number: 3 (lower is better)
Translates to: SSIFIMTLSAYF*SSRFAAAFASV
Trigger: TACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAGTGTCATGATGAAGATTGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000522437.1
3UTR CCA 72 bp ATTAACAACAACAACAACAAAATCTACAAGTTGCCCTaGGCAACCTGCTTAGGTGCCCATAAAAGTAAATTA +
Preference number: 3 (lower is better)
Translates to: INNNNNKIYKLP*ATCLGAHKSKL
Trigger: TAATTTACTTTTATGGGCACCTAAGCAGGTTGCCCAGGGCAACTTGTAGATTTTGTTGTTGTTGTTGTTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCCCGGCGTTCCCAGCGTaGTCCGGCGCCAGCACCTCG +
Preference number: 4 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASPAFPA*SGASTS
Trigger: CGAGGTGCTGGCGCCGGAGCACGCTGGGAACGCCGG...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTGCAGGGGTCACAAGGTaGTCAGTGGGGGAGGTTCTG +
Preference number: 4 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVAGVTR*SVGEVL
Trigger: CAGAACCTCCCCCACTGAGCACCTTGTGACCCCTGC...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR TCA 90 bp AGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTCGCGGACTCCATGCGTaGCTATCCAGGCGCCCAGAC +
Preference number: 4 (lower is better)
Translates to: RKRFCTTGHNMYKDASSCRGLHA*LSRRPD
Trigger: GTCTGGGCGCCTGGATAGTCACGCATGGAGTCCGCG...ACAACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR TCA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCACAGTGGGGGAGGTTCTaGGCCAGGAGAAGGAATTTC +
Preference number: 4 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSQWGRF*ARRRNF
Trigger: GAAATTCCTTCTCCTGGCTCAGAACCTCCCCCACTG...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp TATTTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTCCGGCGTTCCCAGCGTaGTCCGGCGCCAGCACCTCG +
Preference number: 4 (lower is better)
Translates to: YFALNRTKVLNRKRFCTTPAFPA*SGASTS
Trigger: CGAGGTGCTGGCGCCGGAGCACGCTGGGAACGCCGG...AGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCACCTCGCGGACTCCATaGGTGACTATCCAGGCGCCC +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGTSRTP*VTIQAP
Trigger: GGGCGCCTGGATAGTCACGCATGGAGTCCGCGAGGT...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp CACTCCTCCTCTTCTGCTACTTGTGATTCACGAAGAGCTGTTGGGAATACTCGAACAGTGGTACTTTTCTaGGCAAGTCACAGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: HSSSSATCDSRRAVGNTRTVVLF*ASHRAS
Trigger: GGAGGCCCTGTGACTTGCGCAGAAAAGTACCACTGT...TCGAGTATTCCCAACAGCTCTTCGTGAATCACAAGTAGCAGAAGAGGAGGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR TCA 90 bp GCAATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGCTCTTCTGCTACTTGTaGTTCACGAAGAGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: AIKLFNHLGGGGLSPKRQLFCYL*FTKSCW
Trigger: CCAACAGCTCTTCGTGAATCACAAGTAGCAGAAGAG...CTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTATTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR TCA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCAAGGTCACTAGGGATATaGTGGCTTAGCTTGGGCTCA +
Preference number: 4 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSRSLGI*WLSLGS
Trigger: TGAGCCCAAGCTAAGCCATCATATCCCTAGTGACCT...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CCA 90 bp CTATGTCAGTATTCATTGCTCTTCGTGCCTCAGCTTGTTTGTGTAGCCACTCCTATCTACAAGTTGCCCTaGGCAACCTGCTTAGGTGCC +
Preference number: 4 (lower is better)
Translates to: LCQYSLLFVPQLVCVATPIYKLP*ATCLGA
Trigger: GGCACCTAAGCAGGTTGCCCAGGGCAACTTGTAGAT...AGGAGTGGCTACACAAACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCAAGCTGGGGTTACCATaGGCCAGCCCTTCCGGGTCA +
Preference number: 4 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDAKLGLP*ASPSGS
Trigger: TGACCCGGAAGGGCTGGCGCATGGTAACCCCAGCTT...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTTCAGATAGTTTTCCGTaGAGAACACGTCCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVSDSFP*RTRPCL
Trigger: GAGACACGGACGTGTTCTGCACGGAAAACTATCTGA...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp GCAATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCCCAATCTTTGCTTTaGTGCTCTCATCGTCTATGG +
Preference number: 4 (lower is better)
Translates to: AIKLFNHLGGGGLSPKRQSQSLL*CSHRLW
Trigger: CCATAGACGATGAGAGCAGCAAAGCAAAGATTGGGA...CTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTATCTTCCCGCTTTGCTaGAGCTTTTGCTTCTGTAGC +
Preference number: 4 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVIFPLC*SFCFCS
Trigger: GCTACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGAT...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CCA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTTATGATGGCTTAGCTTaGGCTCAGAGGCCTGACATT +
Preference number: 4 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVYDGLA*AQRPDI
Trigger: AATGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATA...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR TCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCGCCCAGACCAGAGAGTaGTGCCGATTCTTGGGGTTA +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGAQTRE*CRFLGL
Trigger: TAACCCCAAGAATCGGCATCACTCTCTGGTCTGGGC...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR TCA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCACTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSLSAYF*SSRFAA
Trigger: TGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAG...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCACAATCTTTGCTTTGCTaGTCTCATCGTCTATGGGAG +
Preference number: 4 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSQSLLC*SHRLWE
Trigger: CTCCCATAGACGATGAGAGCAGCAAAGCAAAGATTG...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp GCTATGTCAGTATTCATTGCTCTTCGTGCCTCAGCTTGTTTGTGTAGCCACTCCCAATCTTTGCTTTGCTaGTCTCATCGTCTATGGGAG +
Preference number: 4 (lower is better)
Translates to: AMSVFIALRASACLCSHSQSLLC*SHRLWE
Trigger: CTCCCATAGACGATGAGAGCAGCAAAGCAAAGATTG...GGAGTGGCTACACAAACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTGTCATTCCCAATCTTTaGTTTGCTGCTCTCATCGTC +
Preference number: 4 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVVIPNL*FAALIV
Trigger: GACGATGAGAGCAGCAAAGCAAAGATTGGGAATGAC...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp CTATGTCAGTATTCATTGCTCTTCGTGCCTCAGCTTGTTTGTGTAGCCACTCCTATCTTCCCGCTTTGCTaGAGCTTTTGCTTCTGTAGC +
Preference number: 4 (lower is better)
Translates to: LCQYSLLFVPQLVCVATPIFPLC*SFCFCS
Trigger: GCTACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGAT...AGGAGTGGCTACACAAACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CCA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCCTTCTTGCGCCTGCTTaGTTGCTAGGGAAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDALLAPA*LLGKLG
Trigger: CCCCAGCTTCCCTAGCAACCAAGCAGGCGCAAGAAG...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CCA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCATTCACGAAGAGCTGTTaGGAATACTCGAGGGGTAAA +
Preference number: 4 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSFTKSC*EYSRGK
Trigger: TTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGAA...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CCA 90 bp CACTCCTCCTCTTCTGCTACTTGTGATTCACGAAGAGCTGTTGGGAATACTCGATTCACGAAGAGCTGTTaGGAATACTCGAGGGGTAAA +
Preference number: 4 (lower is better)
Translates to: HSSSSATCDSRRAVGNTRFTKSC*EYSRGK
Trigger: TTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGAA...TCGAGTATTCCCAACAGCTCTTCGTGAATCACAAGTAGCAGAAGAGGAGGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR CAA 72 bp TCACGAAGAGCTGTTGGGAATACTCGAGGGGTAAAGTaGATTTTAATACTGCCAACAGAGCGAGGAGCAGGA +
Preference number: 4 (lower is better)
Translates to: SRRAVGNTRGVK*ILILPTERGAG
Trigger: TCCTGCTCCTCGCTCTGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGAAGCTGGGGTTACCATaGGCCAGCCCTTCCGGGTCA +
Preference number: 4 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMKLGLP*ASPSGS
Trigger: TGACCCGGAAGGGCTGGCGCATGGTAACCCCAGCTT...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCGTTGCTTCTTGCGCCTaGTTGGTTGCTAGGGAAGCT +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGVASCA*LVAREA
Trigger: AGCTTCCCTAGCAACCAAGCAGGCGCAAGAAGCAAC...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp AGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTGTTGCTTCTTGCGCCTaGTTGGTTGCTAGGGAAGCT +
Preference number: 4 (lower is better)
Translates to: RKRFCTTGHNMYKDASSCVASCA*LVAREA
Trigger: AGCTTCCCTAGCAACCAAGCAGGCGCAAGAAGCAAC...ACAACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTTTTCCAGGCTTCCAATaGTTTAGTGGCTTTTATCCG +
Preference number: 4 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVFPGFQ*FSGFYP
Trigger: CGGATAAAAGCCACTAAAGCATTGGAAGCCTGGAAA...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCAAGGCCTGACATTCAATaGCCTCAAGAGAACAGAATT +
Preference number: 4 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSRPDIQ*PQENRI
Trigger: AATTCTGTTCTCTTGAGGGCATTGAATGTCAGGCCT...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp AAATCGCAAAGTTCAGCTATGTCAGTATTCATTGCTCTTCGTGCCTCAGCTTGTTTGCCCTGGGCAACCTaGTTAGGTGCCCATAAAAGT +
Preference number: 4 (lower is better)
Translates to: KSQSSAMSVFIALRASACLPWAT*LGAHKS
Trigger: ACTTTTATGGGCACCTAAGCAGGTTGCCCAGGGCAA...ACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAGCTGAACTTTGCGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR CAA 72 bp CCACGTCGTACATGTGCCTTCATTCTTGCATTAGCATaGTCTGTAACAGGTGGCATCAATAATTCCAGTGCC +
Preference number: 4 (lower is better)
Translates to: PRRTCAFILALA*SVTGGINNSSA
Trigger: GGCACTGGAATTATTGATGCCACCTGTTACAGACAATGCTAATGCAAGAATGAAGGCACATGTACGACGTGG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR TCA 90 bp AATACTCGAGGGGTAAAGTTGATTTTAATACTGCCAACAGAGCGAGGAGCAGGACTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: NTRGVKLILILPTERGAGLSAYF*SSRFAA
Trigger: TGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAG...TCCTGCTCCTCGCTCTGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACGATAGCGCGGCTGGTTaGTTCTTGCGCCTGCTTGGT +
Preference number: 4 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYDSAAG*FLRLLG
Trigger: ACCAAGCAGGCGCAAGAAGCAACCAGCCGCGCTATC...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGGATAGCGCGGCTGGTTaGTTCTTGCGCCTGCTTGGT +
Preference number: 4 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMDSAAG*FLRLLG
Trigger: ACCAAGCAGGCGCAAGAAGCAACCAGCCGCGCTATC...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp ACGTCGTACATGTGCCTTCATTCTTGCATTAGCATTGTCTGTAACAGGTGGCATTCCCAATCTTTGCTTTaGTGCTCTCATCGTCTATGG +
Preference number: 4 (lower is better)
Translates to: TSYMCLHSCISIVCNRWHSQSLL*CSHRLW
Trigger: CCATAGACGATGAGAGCAGCAAAGCAAAGATTGGGA...ATGCCACCTGTTACAGACAATGCTAATGCAAGAATGAAGGCACATGTACGACGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CCA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGCTTCTTGCGCCTGCTTaGTTGCTAGGGAAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMLLAPA*LLGKLG
Trigger: CCCCAGCTTCCCTAGCAACCAAGCAGGCGCAAGAAG...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR TCA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACGCCCAGACCAGAGAGTaGTGCCGATTCTTGGGGTTA +
Preference number: 4 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYAQTRE*CRFLGL
Trigger: TAACCCCAAGAATCGGCATCACTCTCTGGTCTGGGC...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR TCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCTCTTCTGCTACTTGTaGTTCACGAAGAGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGLFCYL*FTKSCW
Trigger: CCAACAGCTCTTCGTGAATCACAAGTAGCAGAAGAG...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCTCAGATAGTTTTCCGTaGAGAACACGTCCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGSDSFP*RTRPCL
Trigger: GAGACACGGACGTGTTCTGCACGGAAAACTATCTGA...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTTCAGATAGTTTTCCGTaGAGAACACGTCCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFSDSFP*RTRPCL
Trigger: GAGACACGGACGTGTTCTGCACGGAAAACTATCTGA...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000522437.1
CDS-3UTR GCA 90 bp GGTGGCAAGCAGCCCGGTTCAAATACAATAGTGGCATCTTATTATTTAGTCTTATCAGATAGTTTTCCGTaGAGAACACGTCCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: GGKQPGSNTIVASYYLVLSDSFP*RTRPCL
Trigger: GAGACACGGACGTGTTCTGCACGGAAAACTATCTGA...TAAGACTAAATAATAAGATGCCACTATTGTATTTGAACCGGGCTGCTTGCCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTATATGCATTGATAGCTaGCAAATAGTTTTCCGTTGC +
Preference number: 4 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVICIDS*QIVFRC
Trigger: GCAACGGAAAACTATTTGGCAGCTATCAATGCATAT...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR GCA 90 bp GCTATGTCAGTATTCATTGCTCTTCGTGCCTCAGCTTGTTTGTGTAGCCACTCCATGTGCCTTCATTCTTaGATTAGCATTGTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: AMSVFIALRASACLCSHSMCLHS*ISIVCN
Trigger: GTTACAGACAATGCTAATGCAAGAATGAAGGCACAT...GGAGTGGCTACACAAACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR TCA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCCTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASLSAYF*SSRFAA
Trigger: TGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAG...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR TCA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCCTCTTCTGCTACTTGTaGTTCACGAAGAGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDALFCYL*FTKSCW
Trigger: CCAACAGCTCTTCGTGAATCACAAGTAGCAGAAGAG...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR TCA 90 bp TCCACCTATAAAGCTTTCCCCTGTGCTGAGGAAACCTGTAGGTTTCAGAACTGTTGGAAGATCATACATTaGGGTAAACCTTCTACATAC +
Preference number: 4 (lower is better)
Translates to: STYKAFPCAEETCRFQNCWKIIH*GKPSTY
Trigger: GTATGTAGAAGGTTTACCTCAATGTATGATCTTCCA...ACAGTTCTGAAACCTACAGGTTTCCTCAGCACAGGGGAAAGCTTTATAGGTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCAATCTTTGCTTTGCTaGTCTCATCGTCTATGGGAG +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGQSLLC*SHRLWE
Trigger: CTCCCATAGACGATGAGAGCAGCAAAGCAAAGATTG...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp AGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTCAATCTTTGCTTTGCTaGTCTCATCGTCTATGGGAG +
Preference number: 4 (lower is better)
Translates to: RKRFCTTGHNMYKDASSCQSLLC*SHRLWE
Trigger: CTCCCATAGACGATGAGAGCAGCAAAGCAAAGATTG...ACAACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp AGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTTCCCAATCTTTGCTTTaGTGCTCTCATCGTCTATGG +
Preference number: 4 (lower is better)
Translates to: RKRFCTTGHNMYKDASSCSQSLL*CSHRLW
Trigger: CCATAGACGATGAGAGCAGCAAAGCAAAGATTGGGA...ACAACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCTCCCAATCTTTGCTTTaGTGCTCTCATCGTCTATGG +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGSQSLL*CSHRLW
Trigger: CCATAGACGATGAGAGCAGCAAAGCAAAGATTGGGA...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp ACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTCATTCCCAATCTTTaGTTTGCTGCTCTCATCGTC +
Preference number: 4 (lower is better)
Translates to: TESDSVQLAIICTKMPPVVIPNL*FAALIV
Trigger: GACGATGAGAGCAGCAAAGCAAAGATTGGGAATGAC...AACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTGTCATTCCCAATCTTTaGTTTGCTGCTCTCATCGTC +
Preference number: 4 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFVIPNL*FAALIV
Trigger: GACGATGAGAGCAGCAAAGCAAAGATTGGGAATGAC...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522437.1
CDS-3UTR GCA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCATCTTCCCGCTTTGCTaGAGCTTTTGCTTCTGTAGC +
Preference number: 4 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDAIFPLC*SFCFCS
Trigger: GCTACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGAT...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCTCCACGTCGTACATGTaGCTTCATTCTTGCATTAGC +
Preference number: 4 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASSTSYM*LHSCIS
Trigger: GCTAATGCAAGAATGAAGGCACATGTACGACGTGGA...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp GAGGTAAACCTTCTACATACAATTCTAGTTGACAGAATGCTGTTCCACGTCGTATCCACGTCGTACATGTaGCTTCATTCTTGCATTAGC +
Preference number: 4 (lower is better)
Translates to: EVNLLHTILVDRMLFHVVSTSYM*LHSCIS
Trigger: GCTAATGCAAGAATGAAGGCACATGTACGACGTGGA...TACGACGTGGAACAGCATTCTGTCAACTAGAATTGTATGTAGAAGGTTTACCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTTCCCAATCTTTGCTTTaGTGCTCTCATCGTCTTCAG +
Preference number: 4 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFSQSLL*CSHRLQ
Trigger: CTGAAGACGATGAGAGCAGCAAAGCAAAGATTGGGA...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522437.1
CDS-3UTR CCA 90 bp TATTTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGCCAGAGTAGTCTGCTaGATCCATGGTGTGGGTTTG +
Preference number: 4 (lower is better)
Translates to: YFALNRTKVLNRKRFCTTARVVC*IHGVGL
Trigger: CAAACCCACACCATGGATCCAGCAGACTACTCTGGC...AGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321149.7
CDS-3UTR CCA 90 bp AGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTTTCACGAAGAGCTGTTaGGAATACTCGAGGGGTAAA +
Preference number: 4 (lower is better)
Translates to: RKRFCTTGHNMYKDASSCFTKSC*EYSRGK
Trigger: TTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGAA...ACAACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CCA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCAATCCTTCAACCATTCTaGGTTCTTTTCTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSILQPF*VLFFFF
Trigger: AAAGAAGAAGAAAAGAACCCAGAATGGTTGAAGGAT...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000448430.6
3UTR CAA 72 bp CTTTTAAATCGCAAAGTTCAGCTATGTCAGTATTCATaGCTCTTCGTGCCTCAGCTTGTTTGTGTAGCCACT +
Preference number: 4 (lower is better)
Translates to: LLNRKVQLCQYS*LFVPQLVCVAT
Trigger: AGTGGCTACACAAACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAGCTGAACTTTGCGATTTAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR TCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCGGTTACCTTACGATCTaGGCGAATGTTCAAAGAAGT +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGGYLTI*ANVQRS
Trigger: ACTTCTTTGAACATTCGCTCAGATCGTAAGGTAACC...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp TCTTCTTTTAAATCGCAAAGTTCAGCTATGTCAGTATTCATTGCTCTTCGTGCCGTCATTCCCAATCTTTaGTTTGCTGCTCTCATCGTC +
Preference number: 4 (lower is better)
Translates to: SSFKSQSSAMSVFIALRAVIPNL*FAALIV
Trigger: GACGATGAGAGCAGCAAAGCAAAGATTGGGAATGAC...GGCACGAAGAGCAATGAATACTGACATAGCTGAACTTTGCGATTTAAAAGAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCTTTCCAGGCTTCCAATaGTTTAGTGGCTTTTATCCG +
Preference number: 4 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASFPGFQ*FSGFYP
Trigger: CGGATAAAAGCCACTAAAGCATTGGAAGCCTGGAAA...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTTTTCCAGGCTTCCAATaGTTTAGTGGCTTTTATCCG +
Preference number: 4 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFFPGFQ*FSGFYP
Trigger: CGGATAAAAGCCACTAAAGCATTGGAAGCCTGGAAA...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
41% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000522437.1
CDS-3UTR GCA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCACGTCGTACATGTaGCTTCATTCTTGCATTAGC +
Preference number: 4 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDASTSYM*LHSCIS
Trigger: GCTAATGCAAGAATGAAGGCACATGTACGACGTGGA...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CCA 90 bp ACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTTGCTCTCATCGTCTATaGGAGCATAAAGAAATGCCT +
Preference number: 4 (lower is better)
Translates to: TESDSVQLAIICTKMPPVCSHRL*EHKEMP
Trigger: AGGCATTTCTTTATGCTCCCATAGACGATGAGAGCA...AACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR TCA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACCTCTTCTGCTACTTGTaGTTCACGAAGAGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYLFCYL*FTKSCW
Trigger: CCAACAGCTCTTCGTGAATCACAAGTAGCAGAAGAG...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp TGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTAATTCAGTCAGATAGTTTTCCGTaGAGAACACGTCCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: CPGNYTKTYFVTRASLIQSDSFP*RTRPCL
Trigger: GAGACACGGACGTGTTCTGCACGGAAAACTATCTGA...CTGAATTAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp AGTAAGTGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTATCAGATAGTTTTCCGTaGAGAACACGTCCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: SKCPGNYTKTYFVTRASLSDSFP*RTRPCL
Trigger: GAGACACGGACGTGTTCTGCACGGAAAACTATCTGA...TAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACACTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACATCTTCCCGCTTTGCTaGAGCTTTTGCTTCTGTAGC +
Preference number: 4 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYIFPLC*SFCFCS
Trigger: GCTACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGAT...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp AAATCGCAAAGTTCAGCTATGTCAGTATTCATTGCTCTTCGTGCCTCAGCTTGTATATGCATTGATAGCTaGCAAATAGTTTTCCGTTGC +
Preference number: 4 (lower is better)
Translates to: KSQSSAMSVFIALRASACICIDS*QIVFRC
Trigger: GCAACGGAAAACTATTTGGCAGCTATCAATGCATAT...ACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAGCTGAACTTTGCGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTCAATCTTTGCTTTGCTaGTCTCATCGTCTTCAGATA +
Preference number: 4 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFQSLLC*SHRLQI
Trigger: TATCTGAAGACGATGAGAGCAGCAAAGCAAAGATTG...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522437.1
CDS-3UTR CCA 90 bp GAATGCTGTTCCACGTCGTACATGTGCCTTCATTCTTGCATTAGCATTGTCTGTATCCTTCAACCATTCTaGGTTCTTTTCTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: ECCSTSYMCLHSCISIVCILQPF*VLFFFF
Trigger: AAAGAAGAAGAAAAGAACCCAGAATGGTTGAAGGAT...ACAGACAATGCTAATGCAAGAATGAAGGCACATGTACGACGTGGAACAGCATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
3UTR CAA 72 bp GATAGTATTAACAACAACAACAACAAAATCTACAAGTaGCCCTGGGCAACCTGCTTAGGTGCCCATAAAAGT +
Preference number: 4 (lower is better)
Translates to: DSINNNNNKIYK*PWATCLGAHKS
Trigger: ACTTTTATGGGCACCTAAGCAGGTTGCCCAGGGCAACTTGTAGATTTTGTTGTTGTTGTTGTTAATACTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR TCA 90 bp TGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTAATTCAGCTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: CPGNYTKTYFVTRASLIQLSAYF*SSRFAA
Trigger: TGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAG...CTGAATTAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR TCA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGCTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMLSAYF*SSRFAA
Trigger: TGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAG...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp AGTAAGTGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTACAATCTTTGCTTTGCTaGTCTCATCGTCTATGGGAG +
Preference number: 4 (lower is better)
Translates to: SKCPGNYTKTYFVTRASLQSLLC*SHRLWE
Trigger: CTCCCATAGACGATGAGAGCAGCAAAGCAAAGATTG...TAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACACTTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp TGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTAATTCAGTCCCAATCTTTGCTTTaGTGCTCTCATCGTCTATGG +
Preference number: 4 (lower is better)
Translates to: CPGNYTKTYFVTRASLIQSQSLL*CSHRLW
Trigger: CCATAGACGATGAGAGCAGCAAAGCAAAGATTGGGA...CTGAATTAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp TGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTAATTCAGGTCATTCCCAATCTTTaGTTTGCTGCTCTCATCGTC +
Preference number: 4 (lower is better)
Translates to: CPGNYTKTYFVTRASLIQVIPNL*FAALIV
Trigger: GACGATGAGAGCAGCAAAGCAAAGATTGGGAATGAC...CTGAATTAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACGTCATTCCCAATCTTTaGTTTGCTGCTCTCATCGTC +
Preference number: 4 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYVIPNL*FAALIV
Trigger: GACGATGAGAGCAGCAAAGCAAAGATTGGGAATGAC...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCATGTGCCTTCATTCTTaGATTAGCATTGTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASMCLHS*ISIVCN
Trigger: GTTACAGACAATGCTAATGCAAGAATGAAGGCACAT...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CCA 90 bp TGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTAATTCAGTTCACGAAGAGCTGTTaGGAATACTCGAGGGGTAAA +
Preference number: 4 (lower is better)
Translates to: CPGNYTKTYFVTRASLIQFTKSC*EYSRGK
Trigger: TTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGAA...CTGAATTAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CCA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACTTCACGAAGAGCTGTTaGGAATACTCGAGGGGTAAA +
Preference number: 4 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYFTKSC*EYSRGK
Trigger: TTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGAA...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CCA 90 bp AGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTTACAATTTTGTTGGATaGATCAATCTTAAGTGCCGC +
Preference number: 4 (lower is better)
Translates to: RKRFCTTGHNMYKDASSCYNFVG*INLKCR
Trigger: GCGGCACTTAAGATTGATCCATCCAACAAAATTGTA...ACAACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CCA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCTACAATTTTGTTGGATaGATCAATCTTAAGTGCCGC +
Preference number: 4 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGYNFVG*INLKCR
Trigger: GCGGCACTTAAGATTGATCCATCCAACAAAATTGTA...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR TCA 90 bp TATTTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGTTACCTTACGATCTaGGCGAATGTTCAAAGAAGT +
Preference number: 4 (lower is better)
Translates to: YFALNRTKVLNRKRFCTTGYLTI*ANVQRS
Trigger: ACTTCTTTGAACATTCGCTCAGATCGTAAGGTAACC...AGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR GCA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACTTTCCAGGCTTCCAATaGTTTAGTGGCTTTTATCCG +
Preference number: 4 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYFPGFQ*FSGFYP
Trigger: CGGATAAAAGCCACTAAAGCATTGGAAGCCTGGAAA...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTTTCCAGGCTTCCAATaGTTTAGTGGCTTTTATCCG +
Preference number: 4 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMFPGFQ*FSGFYP
Trigger: CGGATAAAAGCCACTAAAGCATTGGAAGCCTGGAAA...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCATATGCATTGATAGCTaGCAAATAGTTTTCCGTTGC +
Preference number: 4 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDAICIDS*QIVFRC
Trigger: GCAACGGAAAACTATTTGGCAGCTATCAATGCATAT...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR GCA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCATGTGCCTTCATTCTTaGATTAGCATTGTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDAMCLHS*ISIVCN
Trigger: GTTACAGACAATGCTAATGCAAGAATGAAGGCACAT...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CCA 90 bp AGTAAGTGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTATGCTCTCATCGTCTATaGGAGCATAAAGAAATGCCT +
Preference number: 4 (lower is better)
Translates to: SKCPGNYTKTYFVTRASLCSHRL*EHKEMP
Trigger: AGGCATTTCTTTATGCTCCCATAGACGATGAGAGCA...TAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACACTTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CCA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCATCCTTCAACCATTCTaGGTTCTTTTCTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASILQPF*VLFFFF
Trigger: AAAGAAGAAGAAAAGAACCCAGAATGGTTGAAGGAT...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR TCA 90 bp AAGCAGCCCGGTTCAAATACAATAGTGGCATCTTATTATTTAGTCTTATGGCTATTTCTCCCTTCATCATaGCACTTAGTGCGTATTTTT +
Preference number: 4 (lower is better)
Translates to: KQPGSNTIVASYYLVLWLFLPSS*HLVRIF
Trigger: AAAAATACGCACTAAGTGTCATGATGAAGGGAGAAA...TAGCCATAAGACTAAATAATAAGATGCCACTATTGTATTTGAACCGGGCTGCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR GCA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACATATGCATTGATAGCTaGCAAATAGTTTTCCGTTGC +
Preference number: 4 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYICIDS*QIVFRC
Trigger: GCAACGGAAAACTATTTGGCAGCTATCAATGCATAT...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CCA 90 bp TATTTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTATCCTTCAACCATTCTaGGTTCTTTTCTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: YFALNRTKVLNRKRFCTTILQPF*VLFFFF
Trigger: AAAGAAGAAGAAAAGAACCCAGAATGGTTGAAGGAT...AGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAAATA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS GCA 90 bp CAGCCCTTCCGGGTCAGGCCGGCCGGGAGCCCGGCGTTCCCAGCGTaGTCCGGCGCCAGCACCTCGCGGACTCCATGCGTGACTATCCAG +
Preference number: 5 (lower is better)
Translates to: QPFRVRPAGSPAFPA*SGASTSRTPCVTIQ
Trigger: CTGGATAGTCACGCATGGAGTCCGCGAGGTGCTGGCGCCGGAGCACGCTGGGAACGCCGGGCTCCCGGCCGGCCTGACCCGGAAGGGCTG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS GCA 90 bp TTGCTTCTTGCGCCTGCTTGGTTGCTAGGGAAGCTGGGGTTACCATaGGCCAGCCCTTCCGGGTCAGGCCGGCCGGGAGCCCGGCGTTCC +
Preference number: 5 (lower is better)
Translates to: LLLAPAWLLGKLGLP*ASPSGSGRPGARRS
Trigger: GGAACGCCGGGCTCCCGGCCGGCCTGACCCGGAAGGGCTGGCGCATGGTAACCCCAGCTTCCCTAGCAACCAAGCAGGCGCAAGAAGCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS GCA 90 bp CCGGCGTTCCCAGCGTGCTCCGGCGCCAGCACCTCGCGGACTCCATaGGTGACTATCCAGGCGCCCAGACCAGAGAGTGATGCCGATTCT +
Preference number: 5 (lower is better)
Translates to: PAFPACSGASTSRTP*VTIQAPRPESDADS
Trigger: AGAATCGGCATCACTCTCTGGTCTGGGCGCCTGGATAGTCACGCATGGAGTCCGCGAGGTGCTGGCGCCGGAGCACGCTGGGAACGCCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS TCA 90 bp CGTTCCCAGCGTGCTCCGGCGCCAGCACCTCGCGGACTCCATGCGTaGCTATCCAGGCGCCCAGACCAGAGAGTGATGCCGATTCTTGGG +
Preference number: 5 (lower is better)
Translates to: RSQRAPAPAPRGLHA*LSRRPDQRVMPILG
Trigger: CCCAAGAATCGGCATCACTCTCTGGTCTGGGCGCCTGGATAGTCACGCATGGAGTCCGCGAGGTGCTGGCGCCGGAGCACGCTGGGAACG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS TCA 90 bp CTCGCGGACTCCATGCGTGACTATCCAGGCGCCCAGACCAGAGAGTaGTGCCGATTCTTGGGGTTACCTTACGATCTGAGCGAATGTTCA +
Preference number: 5 (lower is better)
Translates to: LADSMRDYPGAQTRE*CRFLGLPYDLSECS
Trigger: TGAACATTCGCTCAGATCGTAAGGTAACCCCAAGAATCGGCATCACTCTCTGGTCTGGGCGCCTGGATAGTCACGCATGGAGTCCGCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CAA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTCTGACGCACACGCCTTaGAGGGGCAGAGACAGAAAG +
Preference number: 5 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVLTHTP*RGRDRK
Trigger: CTTTCTGTCTCTGCCCCTCAAAGGCGTGTGCGTCAG...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CAA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTCGTGCCTCAGCTTGTTaGTGTAGCCACTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVRASAC*CSHSSS
Trigger: AGAGGAGGAGTGGCTACACAAACAAGCTGAGGCACG...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CAA 90 bp CACTCCTCCTCTTCTGCTACTTGTGATTCACGAAGAGCTGTTGGGAATACTCGACGTGCCTCAGCTTGTTaGTGTAGCCACTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: HSSSSATCDSRRAVGNTRRASAC*CSHSSS
Trigger: AGAGGAGGAGTGGCTACACAAACAAGCTGAGGCACG...TCGAGTATTCCCAACAGCTCTTCGTGAATCACAAGTAGCAGAAGAGGAGGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CAA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCGCTTCTTGCGCCTGCTaGGTTGCTAGGGAAGCTGGG +
Preference number: 5 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASASCAC*VAREAG
Trigger: CCCAGCTTCCCTAGCAACCAAGCAGGCGCAAGAAGC...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CAA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCCTGACGCACACGCCTTaGAGGGGCAGAGACAGAAAG +
Preference number: 5 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASLTHTP*RGRDRK
Trigger: CTTTCTGTCTCTGCCCCTCAAAGGCGTGTGCGTCAG...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp TTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCTGACGCACACGCCTTaGAGGGGCAGAGACAGAAAG +
Preference number: 5 (lower is better)
Translates to: FALNRTKVLNRKRFCTTGLTHTP*RGRDRK
Trigger: CTTTCTGTCTCTGCCCCTCAAAGGCGTGTGCGTCAG...GCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp GCAATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGCTTTGCATCATCTCTTaGTCAACACCCGTCACAGAA +
Preference number: 5 (lower is better)
Translates to: AIKLFNHLGGGGLSPKRQLCIIS*STPVTE
Trigger: TTCTGTGACGGGTGTTGACAAAGAGATGATGCAAAG...CTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CAA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTTTTGATCTTCCCGCTTaGCTGCAGCTTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVFDLPA*LQLLLL
Trigger: CAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAA...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CAA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTTTCCCAATCTTTGCTTaGCTGCTCTCATCGTCTATG +
Preference number: 5 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVFPIFA*LLSSSM
Trigger: CATAGACGATGAGAGCAGCAAAGCAAAGATTGGGAA...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CAA 90 bp GCAATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGCTCCTCAGCTTTTCTTaGATATTCTTTCCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: AIKLFNHLGGGGLSPKRQLLSFS*IFFPGF
Trigger: GAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG...CTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CAA 90 bp ACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTCGTGCCTCAGCTTGTTaGTGTAGCCACTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: TESDSVQLAIICTKMPPVRASAC*CSHSSS
Trigger: AGAGGAGGAGTGGCTACACAAACAAGCTGAGGCACG...AACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp GTGGGGGAGGTTCTGAGCCAGGAGAAGGAATTTCACAAGGTAATGTCATCAGTTCTATGTCAGTATTCATaGCTCTTCGTGCCTCAGCTT +
Preference number: 5 (lower is better)
Translates to: VGEVLSQEKEFHKVMSSVLCQYS*LFVPQL
Trigger: AAGCTGAGGCACGAAGAGCAATGAATACTGACATAG...AACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCAGAACCTCCCCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CAA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGGCTTCTTGCGCCTGCTaGGTTGCTAGGGAAGCTGGG +
Preference number: 5 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMASCAC*VAREAG
Trigger: CCCAGCTTCCCTAGCAACCAAGCAGGCGCAAGAAGC...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CAA 90 bp TGTTGGGAATACTCGAGGGGTAAAGTTGATTTTAATACTGCCAACAGAGCGAGGTTTGATCTTCCCGCTTaGCTGCAGCTTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: CWEYSRGKVDFNTANRARFDLPA*LQLLLL
Trigger: CAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAA...CCTCGCTCTGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGTATTCCCAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CAA 90 bp ATAAAGCTTTTTAATCACCTGGGTGGAGGCGGGCTGAGTCCGAAAAGACAGTCAACTCGAGGGGTAAAGTaGATTTTAATACTGCCAACA +
Preference number: 5 (lower is better)
Translates to: IKLFNHLGGGGLSPKRQSTRGVK*ILILPT
Trigger: TGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGT...TGACTGTCTTTTCGGACTCAGCCCGCCTCCACCCAGGTGATTAAAAAGCTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS-3UTR CAA 90 bp GTAAAGTTGATTTTAATACTGCCAACAGAGCGAGGAGCAGGAATACTGTCTTCCCTTTGCATCATCTCTTaGTCAACACCCGTCACAGAA +
Preference number: 5 (lower is better)
Translates to: VKLILILPTERGAGILSSLCIIS*STPVTE
Trigger: TTCTGTGACGGGTGTTGACAAAGAGATGATGCAAAG...GGAAGACAGTATTCCTGCTCCTCGCTCTGTTGGCAGTATTAAAATCAACTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CAA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACCGTGCCTCAGCTTGTTaGTGTAGCCACTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYRASAC*CSHSSS
Trigger: AGAGGAGGAGTGGCTACACAAACAAGCTGAGGCACG...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGCGTGCCTCAGCTTGTTaGTGTAGCCACTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMRASAC*CSHSSS
Trigger: AGAGGAGGAGTGGCTACACAAACAAGCTGAGGCACG...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp CGTACATGTGCCTTCATTCTTGCATTAGCATTGTCTGTAACAGGTGGCATCAATCTATGTCAGTATTCATaGCTCTTCGTGCCTCAGCTT +
Preference number: 5 (lower is better)
Translates to: RTCAFILALALSVTGGINLCQYS*LFVPQL
Trigger: AAGCTGAGGCACGAAGAGCAATGAATACTGACATAG...ATTGATGCCACCTGTTACAGACAATGCTAATGCAAGAATGAAGGCACATGTACG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CAA 90 bp TGTTGGGAATACTCGAGGGGTAAAGTTGATTTTAATACTGCCAACAGAGCGAGGATTCTTGCATTAGCATaGTCTGTAACAGGTGGCATC +
Preference number: 5 (lower is better)
Translates to: CWEYSRGKVDFNTANRARILALA*SVTGGI
Trigger: GATGCCACCTGTTACAGACAATGCTAATGCAAGAAT...CCTCGCTCTGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGTATTCCCAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CAA 90 bp ACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTCTTTGCATCATCTCTTaGTCAACACCCGTCACAGAA +
Preference number: 5 (lower is better)
Translates to: TESDSVQLAIICTKMPPVLCIIS*STPVTE
Trigger: TTCTGTGACGGGTGTTGACAAAGAGATGATGCAAAG...AACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTTTGATCTTCCCGCTTaGCTGCAGCTTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDAFDLPA*LQLLLL
Trigger: CAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAA...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AATACTCGAGGGGTAAAGTTGATTTTAATACTGCCAACAGAGCGAGGAGCAGGAACTCGAGGGGTAAAGTaGATTTTAATACTGCCAACA +
Preference number: 5 (lower is better)
Translates to: NTRGVKLILILPTERGAGTRGVK*ILILPT
Trigger: TGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGT...TCCTGCTCCTCGCTCTGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CAA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCCTATGTCAGTATTCATaGCTCTTCGTGCCTCAGCTT +
Preference number: 5 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASLCQYS*LFVPQL
Trigger: AAGCTGAGGCACGAAGAGCAATGAATACTGACATAG...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp GGTGGCAAGCAGCCCGGTTCAAATACAATAGTGGCATCTTATTATTTAGTCTTAAACAAAATCTACAAGTaGCCCTGGGCAACCTGCTTA +
Preference number: 5 (lower is better)
Translates to: GGKQPGSNTIVASYYLVLNKIYK*PWATCL
Trigger: TAAGCAGGTTGCCCAGGGCAACTTGTAGATTTTGTT...TAAGACTAAATAATAAGATGCCACTATTGTATTTGAACCGGGCTGCTTGCCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CAA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTTTCCCAATCTTTGCTTaGCTGCTCTCATCGTCTTCA +
Preference number: 5 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFFPIFA*LLSSSS
Trigger: TGAAGACGATGAGAGCAGCAAAGCAAAGATTGGGAA...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000522437.1
CDS TCA 90 bp GTCATTCTGCAACTTACCTTCATCATGACACTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCAGCTTTTGCTTCTGTAGCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: VILQLTFIMTLSAYF*SSRFAAAFASVASF
Trigger: AAAAGAAGCTACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAGTGTCATGATGAAGGTAAGTTGCAGAATGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000519017.1
CDS-3UTR CAA 90 bp AGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTCTCCTCAGCTTTTCTTaGATATTCTTTCCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: RKRFCTTGHNMYKDASSCLLSFS*IFFPGF
Trigger: GAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG...ACAACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCCTCCTCAGCTTTTCTTaGATATTCTTTCCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASLLSFS*IFFPGF
Trigger: GAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp CTCCTCAGCTTTTCTTTGATATTCTTTCCAGGCTTCCAATGCTTTAGTGGCTTTCTCCTCAGCTTTTCTTaGATATTCTTTCCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: LLSFSLIFFPGFQCFSGFLLSFS*IFFPGF
Trigger: GAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG...AAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522437.1
CDS-3UTR CAA 90 bp AAGCAGCCCGGTTCAAATACAATAGTGGCATCTTATTATTTAGTCTTATGGCTATTCCCAATCTTTGCTTaGCTGCTCTCATCGTCTATG +
Preference number: 5 (lower is better)
Translates to: KQPGSNTIVASYYLVLWLFPIFA*LLSSSM
Trigger: CATAGACGATGAGAGCAGCAAAGCAAAGATTGGGAA...TAGCCATAAGACTAAATAATAAGATGCCACTATTGTATTTGAACCGGGCTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000524160.5
CDS-3UTR CAA 90 bp TATTTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTTTTGATCTTCCCGCTTaGCTGCAGCTTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: YFALNRTKVLNRKRFCTTFDLPA*LQLLLL
Trigger: CAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAA...AGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTTTGATCTTCCCGCTTaGCTGCAGCTTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMFDLPA*LQLLLL
Trigger: CAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAA...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp CTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCACTCGAGGGGTAAAGTaGATTTTAATACTGCCAACA +
Preference number: 5 (lower is better)
Translates to: LNRKRFCTTGHNMYKDASTRGVK*ILILPT
Trigger: TGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGT...GGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp ACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTACTCGAGGGGTAAAGTaGATTTTAATACTGCCAACA +
Preference number: 5 (lower is better)
Translates to: TESDSVQLAIICTKMPPVTRGVK*ILILPT
Trigger: TGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGT...AACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AGTAAGTGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTATTCCCAATCTTTGCTTaGCTGCTCTCATCGTCTATG +
Preference number: 5 (lower is better)
Translates to: SKCPGNYTKTYFVTRASLFPIFA*LLSSSM
Trigger: CATAGACGATGAGAGCAGCAAAGCAAAGATTGGGAA...TAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACACTTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp TATTTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTCTTTGCATCATCTCTTaGTCAACACCCGTCACAGAA +
Preference number: 5 (lower is better)
Translates to: YFALNRTKVLNRKRFCTTLCIIS*STPVTE
Trigger: TTCTGTGACGGGTGTTGACAAAGAGATGATGCAAAG...AGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACCTATGTCAGTATTCATaGCTCTTCGTGCCTCAGCTT +
Preference number: 5 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYLCQYS*LFVPQL
Trigger: AAGCTGAGGCACGAAGAGCAATGAATACTGACATAG...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGCTATGTCAGTATTCATaGCTCTTCGTGCCTCAGCTT +
Preference number: 5 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMLCQYS*LFVPQL
Trigger: AAGCTGAGGCACGAAGAGCAATGAATACTGACATAG...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCTCCAGTTGTCTTCTCAGCATCAATTaGTACAATTTTGTTGGATGG +
Preference number: 5 (lower is better)
Translates to: RKRFCTTGHNMYKDASSCLLSIN*YNFVGW
Trigger: CCATCCAACAAAATTGTACAAATTGATGCTGAGAAG...ACAACTGGAGGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGCTCCTCAGCTTTTCTTaGATATTCTTTCCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMLLSFS*IFFPGF
Trigger: GAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAG...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp TATTTTGCCCTCAACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTATTCTTGCATTAGCATaGTCTGTAACAGGTGGCATC +
Preference number: 5 (lower is better)
Translates to: YFALNRTKVLNRKRFCTTILALA*SVTGGI
Trigger: GATGCCACCTGTTACAGACAATGCTAATGCAAGAAT...AGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTTGAGGGCAAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CAA 90 bp AGTAAGTGTCCTGGTAACTATACCAAAACATATTTTGTTACAAGGGCAAGCTTAATTCTTGCATTAGCATaGTCTGTAACAGGTGGCATC +
Preference number: 5 (lower is better)
Translates to: SKCPGNYTKTYFVTRASLILALA*SVTGGI
Trigger: GATGCCACCTGTTACAGACAATGCTAATGCAAGAAT...TAAGCTTGCCCTTGTAACAAAATATGTTTTGGTATAGTTACCAGGACACTTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS-3UTR CAA 90 bp GTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACAAAGATGCCCTTCTCAGCATCAATTaGTACAATTTTGTTGGATGG +
Preference number: 5 (lower is better)
Translates to: VLNRKRFCTTGHNMYKDALLSIN*YNFVGW
Trigger: CCATCCAACAAAATTGTACAAATTGATGCTGAGAAG...GGCATCTTTGTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGTACACTCGAGGGGTAAAGTaGATTTTAATACTGCCAACA +
Preference number: 5 (lower is better)
Translates to: RTKVLNRKRFCTTGHNMYTRGVK*ILILPT
Trigger: TGTTGGCAGTATTAAAATCAACTTTACCCCTCGAGT...GTACATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS-3UTR CAA 90 bp AACAGAACTAAAGTACTAAACAGAAAGCGATTCTGTACAACTGGCCATAATATGCTTCTCAGCATCAATTaGTACAATTTTGTTGGATGG +
Preference number: 5 (lower is better)
Translates to: NRTKVLNRKRFCTTGHNMLLSIN*YNFVGW
Trigger: CCATCCAACAAAATTGTACAAATTGATGCTGAGAAG...CATATTATGGCCAGTTGTACAGAATCGCTTTCTGTTTAGTACTTTAGTTCTGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000457155.6
CDS GCA 72 bp CGGGTCAGGCCGGCCGGGAGCCCGGCGTTCCCAGCGTaGTCCGGCGCCAGCACCTCGCGGACTCCATGCGTG +
Preference number: 6 (lower is better)
Translates to: RVRPAGSPAFPA*SGASTSRTPCV
Trigger: CACGCATGGAGTCCGCGAGGTGCTGGCGCCGGAGCACGCTGGGAACGCCGGGCTCCCGGCCGGCCTGACCCG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS GCA 72 bp GCGCCTGCTTGGTTGCTAGGGAAGCTGGGGTTACCATaGGCCAGCCCTTCCGGGTCAGGCCGGCCGGGAGCC +
Preference number: 6 (lower is better)
Translates to: APAWLLGKLGLP*ASPSGSGRPGA
Trigger: GGCTCCCGGCCGGCCTGACCCGGAAGGGCTGGCGCATGGTAACCCCAGCTTCCCTAGCAACCAAGCAGGCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS TCA 72 bp CGTGCTCCGGCGCCAGCACCTCGCGGACTCCATGCGTaGCTATCCAGGCGCCCAGACCAGAGAGTGATGCCG +
Preference number: 6 (lower is better)
Translates to: RAPAPAPRGLHA*LSRRPDQRVMP
Trigger: CGGCATCACTCTCTGGTCTGGGCGCCTGGATAGTCACGCATGGAGTCCGCGAGGTGCTGGCGCCGGAGCACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS GCA 72 bp CCAGCGTGCTCCGGCGCCAGCACCTCGCGGACTCCATaGGTGACTATCCAGGCGCCCAGACCAGAGAGTGAT +
Preference number: 6 (lower is better)
Translates to: PACSGASTSRTP*VTIQAPRPESD
Trigger: ATCACTCTCTGGTCTGGGCGCCTGGATAGTCACGCATGGAGTCCGCGAGGTGCTGGCGCCGGAGCACGCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS GCA 72 bp CGGGAGCGGATAGCGCGGCTGGTTGCTTCTTGCGCCTaGTTGGTTGCTAGGGAAGCTGGGGTTACCATGCGC +
Preference number: 6 (lower is better)
Translates to: RERIARLVASCA*LVAREAGVTMR
Trigger: GCGCATGGTAACCCCAGCTTCCCTAGCAACCAAGCAGGCGCAAGAAGCAACCAGCCGCGCTATCCGCTCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS GCA 72 bp GGTTTCCCCCTTCTCCCATCATCCCAAGGAGCAGCATaGTGGGGCCAGAGTAGTCTGCTGGATCCATGGTGT +
Preference number: 6 (lower is better)
Translates to: GFPLLPSSQGAA*WGQSSLLDPWC
Trigger: ACACCATGGATCCAGCAGACTACTCTGGCCCCAGCATGCTGCTCCTTGGGATGATGGGAGAAGGGGGAAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000321149.7
CDS TCA 72 bp TCCATGCGTGACTATCCAGGCGCCCAGACCAGAGAGTaGTGCCGATTCTTGGGGTTACCTTACGATCTGAGC +
Preference number: 6 (lower is better)
Translates to: SMRDYPGAQTRE*CRFLGLPYDLS
Trigger: GCTCAGATCGTAAGGTAACCCCAAGAATCGGCATCACTCTCTGGTCTGGGCGCCTGGATAGTCACGCATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000321149.7
ENST00000348518.4
CDS CCA 72 bp CCCAAGGAGCAGCATGCTGGGGCCAGAGTAGTCTGCTaGATCCATGGTGTGGGTTTGCATAATAGGAGAGGA +
Preference number: 6 (lower is better)
Translates to: PKEQHAGARVVC*IHGVGLHNRRG
Trigger: TCCTCTCCTATTATGCAAACCCACACCATGGATCCAGCAGACTACTCTGGCCCCAGCATGCTGCTCCTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321149.7
CDS GCA 72 bp CATCCCAAGGAGCAGCATGCTGGGGCCAGAGTAGTCTaGTGGATCCATGGTGTGGGTTTGCATAATAGGAGA +
Preference number: 6 (lower is better)
Translates to: HPKEQHAGARVV*WIHGVGLHNRR
Trigger: TCTCCTATTATGCAAACCCACACCATGGATCCAGCAGACTACTCTGGCCCCAGCATGCTGCTCCTTGGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000321149.7
CDS TCA 72 bp GAGAGTGATGCCGATTCTTGGGGTTACCTTACGATCTaGGCGAATGTTCAAAGAAGTAGACCCATACCCTCT +
Preference number: 6 (lower is better)
Translates to: ESDADSWGYLTI*ANVQRSRPIPS
Trigger: AGAGGGTATGGGTCTACTTCTTTGAACATTCGCTCAGATCGTAAGGTAACCCCAAGAATCGGCATCACTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000348518.4
CDS CAA 90 bp TTAAGGCAGGAACCGGCCATTTTCACTTCTTTTGTGATTCTTCACTaGCTTCAGGCCATCTGGATGTATACGTGCAGGTCACTAGGGATA +
Preference number: 6 (lower is better)
Translates to: LRQEPAIFTSFVILH*LQAIWMYTCRSLGI
Trigger: TATCCCTAGTGACCTGCACGTATACATCCAGATGGCCTGAAGCAAGTGAAGAATCACAAAAGAAGTGAAAATGGCCGGTTCCTGCCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS CAA 72 bp GAACCGGCCATTTTCACTTCTTTTGTGATTCTTCACTaGCTTCAGGCCATCTGGATGTATACGTGCAGGTCA +
Preference number: 6 (lower is better)
Translates to: EPAIFTSFVILH*LQAIWMYTCRS
Trigger: TGACCTGCACGTATACATCCAGATGGCCTGAAGCAAGTGAAGAATCACAAAAGAAGTGAAAATGGCCGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000448430.6
CDS CAA 72 bp AAGGTGAAGACAATGGTGTCATTCCCAATCTTTGCTTaGCTGCTCTCATCGTCTTCAGATAGTTTTCCGTGC +
Preference number: 6 (lower is better)
Translates to: KVKTMVSFPIFA*LLSSSSDSFPC
Trigger: GCACGGAAAACTATCTGAAGACGATGAGAGCAGCAAAGCAAAGATTGGGAATGACACCATTGTCTTCACCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522437.1
CDS TCA 72 bp AGGACTTGCCTGTCATTCTGCAACTTACCTTCATCATaGCACTTAGTGCGTATTTTTGATCTTCCCGCTTTG +
Preference number: 6 (lower is better)
Translates to: RTCLSFCNLPSS*HLVRIFDLPAL
Trigger: CAAAGCGGGAAGATCAAAAATACGCACTAAGTGTCATGATGAAGGTAAGTTGCAGAATGACAGGCAAGTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000519017.1
CDS GCA 72 bp ATACAAGGTGAAGACAATGGTGTCATTCCCAATCTTTaGTTTGCTGCTCTCATCGTCTATGGGAGCATAAAG +
Preference number: 6 (lower is better)
Translates to: IQGEDNGVIPNL*FAALIVYGSIK
Trigger: CTTTATGCTCCCATAGACGATGAGAGCAGCAAAGCAAAGATTGGGAATGACACCATTGTCTTCACCTTGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000321149.7
ENST00000348518.4
ENST00000448430.6
ENST00000457155.6
ENST00000519017.1
ENST00000524160.5
CDS TCA 72 bp CAACTTACCTTCATCATGACACTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCAGCTTTTGCTTCTGTA +
Preference number: 6 (lower is better)
Translates to: QLTFIMTLSAYF*SSRFAAAFASV
Trigger: TACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAGTGTCATGATGAAGGTAAGTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000519017.1
CDS TCA 72 bp ATTTCTCCCTTCATCATGACACTTAGTGCGTATTTTTaGTCTTCCCGCTTTGCTGCAGCTTTTGCTTCTGTA +
Preference number: 6 (lower is better)
Translates to: ISPFIMTLSAYF*SSRFAAAFASV
Trigger: TACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAGTGTCATGATGAAGGGAGAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000524160.5