Pregenerated sensors for DIRC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000174325Ensembl transcript IDs: ENST00000649108.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTGGCAAGTAACAGGAAACAGGCTTCTTGCTTCCGTGGTCTGTGGTaGGCAGTGATGTTTGCAGTTTTGCAGGCTGCATGTGGGCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: VASNRKQASCFRGLW*AVMFAVLQAACGPQ Trigger: CTGAGGCCCACATGCAGCCTGCAAAACTGCAAACATCACTGCCCACCACAGACCACGGAAGCAAGAAGCCTGTTTCCTGTTACTTGCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS CCA 90 bp | GTGGTGGCAAGTAACAGGAAACAGGCTTCTTGCTTCCGTGGTCTGTaGTGGGCAGTGATGTTTGCAGTTTTGCAGGCTGCATGTGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: VVASNRKQASCFRGL*WAVMFAVLQAACGP Trigger: AGGCCCACATGCAGCCTGCAAAACTGCAAACATCACTGCCCACCACAGACCACGGAAGCAAGAAGCCTGTTTCCTGTTACTTGCCACCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS TCA 90 bp | GTAACAGGAAACAGGCTTCTTGCTTCCGTGGTCTGTGGTGGGCAGTaGTGTTTGCAGTTTTGCAGGCTGCATGTGGGCCTCAGGCATTTG | + |
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Preference number: 5 (lower is better) Translates to: VTGNRLLASVVCGGQ*CLQFCRLHVGLRHL Trigger: CAAATGCCTGAGGCCCACATGCAGCCTGCAAAACTGCAAACATCACTGCCCACCACAGACCACGGAAGCAAGAAGCCTGTTTCCTGTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS CCA 90 bp | AGCATTCTGGACCTCTATACACATGGGGTGGGCATTGCTGAGTGGTaGCAAGTAACAGGAAACAGGCTTCTTGCTTCCGTGGTCTGTGGT | + |
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Preference number: 5 (lower is better) Translates to: SILDLYTHGVGIAEW*QVTGNRLLASVVCG Trigger: ACCACAGACCACGGAAGCAAGAAGCCTGTTTCCTGTTACTTGCCACCACTCAGCAATGCCCACCCCATGTGTATAGAGGTCCAGAATGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS CCA 90 bp | TTGAGCATTCTGGACCTCTATACACATGGGGTGGGCATTGCTGAGTaGTGGCAAGTAACAGGAAACAGGCTTCTTGCTTCCGTGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: LSILDLYTHGVGIAE*WQVTGNRLLASVVC Trigger: ACAGACCACGGAAGCAAGAAGCCTGTTTCCTGTTACTTGCCACCACTCAGCAATGCCCACCCCATGTGTATAGAGGTCCAGAATGCTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS TCA 90 bp | AATTTTGAGCATTCTGGACCTCTATACACATGGGGTGGGCATTGCTaGGTGGTGGCAAGTAACAGGAAACAGGCTTCTTGCTTCCGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: NFEHSGPLYTWGGHC*VVASNRKQASCFRG Trigger: ACCACGGAAGCAAGAAGCCTGTTTCCTGTTACTTGCCACCACTCAGCAATGCCCACCCCATGTGTATAGAGGTCCAGAATGCTCAAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS TCA 90 bp | GAGATGATGGAAGGCTCCAATGTTGCAGCAGCAGAAGAACAATTTTaGGCATTCTGGACCTCTATACACATGGGGTGGGCATTGCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: EMMEGSNVAAAEEQF*AFWTSIHMGWALLS Trigger: ACTCAGCAATGCCCACCCCATGTGTATAGAGGTCCAGAATGCTCAAAATTGTTCTTCTGCTGCTGCAACATTGGAGCCTTCCATCATCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS CCA 72 bp | GGCTGCATGTGGGCCTCAGGCATTTGTCAGGGTGGGTaGTCGGGCTGTTTCTCTGAATTTTTCCTTCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GCMWASGICQGG*SGCFSEFFLLV Trigger: CACCAGAAGGAAAAATTCAGAGAAACAGCCCGACCACCCACCCTGACAAATGCCTGAGGCCCACATGCAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS GCA 72 bp | TTCTTGCTTCCGTGGTCTGTGGTGGGCAGTGATGTTTaGAGTTTTGCAGGCTGCATGTGGGCCTCAGGCATT | + |
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Preference number: 6 (lower is better) Translates to: FLLPWSVVGSDV*SFAGCMWASGI Trigger: AATGCCTGAGGCCCACATGCAGCCTGCAAAACTGCAAACATCACTGCCCACCACAGACCACGGAAGCAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS CCA 72 bp | GACCTCTATACACATGGGGTGGGCATTGCTGAGTGGTaGCAAGTAACAGGAAACAGGCTTCTTGCTTCCGTG | + |
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Preference number: 6 (lower is better) Translates to: DLYTHGVGIAEW*QVTGNRLLASV Trigger: CACGGAAGCAAGAAGCCTGTTTCCTGTTACTTGCCACCACTCAGCAATGCCCACCCCATGTGTATAGAGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS CCA 72 bp | CTGGACCTCTATACACATGGGGTGGGCATTGCTGAGTaGTGGCAAGTAACAGGAAACAGGCTTCTTGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LDLYTHGVGIAE*WQVTGNRLLAS Trigger: GGAAGCAAGAAGCCTGTTTCCTGTTACTTGCCACCACTCAGCAATGCCCACCCCATGTGTATAGAGGTCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS TCA 72 bp | CATTCTGGACCTCTATACACATGGGGTGGGCATTGCTaGGTGGTGGCAAGTAACAGGAAACAGGCTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: HSGPLYTWGGHC*VVASNRKQASC Trigger: GCAAGAAGCCTGTTTCCTGTTACTTGCCACCACTCAGCAATGCCCACCCCATGTGTATAGAGGTCCAGAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS CCA 72 bp | AGTAACAGGAAACAGGCTTCTTGCTTCCGTGGTCTGTaGTGGGCAGTGATGTTTGCAGTTTTGCAGGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SNRKQASCFRGL*WAVMFAVLQAA Trigger: TGCAGCCTGCAAAACTGCAAACATCACTGCCCACCACAGACCACGGAAGCAAGAAGCCTGTTTCCTGTTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS TCA 72 bp | GAAGGCTCCAATGTTGCAGCAGCAGAAGAACAATTTTaGGCATTCTGGACCTCTATACACATGGGGTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: EGSNVAAAEEQF*AFWTSIHMGWA Trigger: TGCCCACCCCATGTGTATAGAGGTCCAGAATGCTCAAAATTGTTCTTCTGCTGCTGCAACATTGGAGCCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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| CDS TCA 72 bp | CCTTTGTTATTGGTTTATAAAAGCATGTGTCTGAGATaGTGGAAGGCTCCAATGTTGCAGCAGCAGAAGAAC | + |
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Preference number: 6 (lower is better) Translates to: PLLLVYKSMCLR*WKAPMLQQQKN Trigger: GTTCTTCTGCTGCTGCAACATTGGAGCCTTCCATCATCTCAGACACATGCTTTTATAAACCAATAACAAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649108.1 |
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