Pregenerated sensors for DHX33-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000262099

Ensembl transcript IDs: ENST00000571506.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	ACACAAATCTGCTGCTGGTTCAACGTGCACATTTTCAGTAATGCCTaGTCACCAAACTGTCAGCAACTAGAGGAAAATTATCTCCGACCT	+
Preference number: 5 (lower is better) Translates to: TQICCWFNVHIFSNA*SPNCQQLEENYLRP Trigger: AGGTCGGAGATAATTTTCCTCTAGTTGCTGACAGTTTGGTGACCAGGCATTACTGAAAATGTGCACGTTGAACCAGCAGCAGATTTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000571506.1
CDS TCA 90 bp	CAGGGCGAGTTTCATGGAAACGAGCTTCAGAAGATACCCTTCACATaGGCTGAAGCTTACGGTGTATTCTCTGGAAATCACATTTCTTTT	+
Preference number: 5 (lower is better) Translates to: QGEFHGNELQKIPFT*AEAYGVFSGNHISF Trigger: AAAAGAAATGTGATTTCCAGAGAATACACCGTAAGCTTCAGCTCATGTGAAGGGTATCTTCTGAAGCTCGTTTCCATGAAACTCGCCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000571506.1
CDS CAA 72 bp	GTGTCTGTGATGGGGTTGCACAGCCATGTAGAGAACTaGAGAGTCTGGATCCTGTGTTTCCCGGTTGTAGCT	+
Preference number: 6 (lower is better) Translates to: VSVMGLHSHVEN*RVWILCFPVVA Trigger: AGCTACAACCGGGAAACACAGGATCCAGACTCTCAAGTTCTCTACATGGCTGTGCAACCCCATCACAGACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000571506.1
CDS TCA 72 bp	TGGAAACGAGCTTCAGAAGATACCCTTCACATGAGCTaGAGCTTACGGTGTATTCTCTGGAAATCACATTTC	+
Preference number: 6 (lower is better) Translates to: WKRASEDTLHMS*SLRCILWKSHF Trigger: GAAATGTGATTTCCAGAGAATACACCGTAAGCTTCAGCTCATGTGAAGGGTATCTTCTGAAGCTCGTTTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000571506.1
CDS TCA 72 bp	TTTCATGGAAACGAGCTTCAGAAGATACCCTTCACATaGGCTGAAGCTTACGGTGTATTCTCTGGAAATCAC	+
Preference number: 6 (lower is better) Translates to: FHGNELQKIPFT*AEAYGVFSGNH Trigger: GTGATTTCCAGAGAATACACCGTAAGCTTCAGCTCATGTGAAGGGTATCTTCTGAAGCTCGTTTCCATGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000571506.1
CDS GCA 72 bp	TTTATTCTTAAACACAAATCTGCTGCTGGTTCAACGTaGACATTTTCAGTAATGCCTGGTCACCAAACTGTC	+
Preference number: 6 (lower is better) Translates to: FILKHKSAAGST*TFSVMPGHQTV Trigger: GACAGTTTGGTGACCAGGCATTACTGAAAATGTGCACGTTGAACCAGCAGCAGATTTGTGTTTAAGAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000571506.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu