Pregenerated sensors for DEPDC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000024526Ensembl transcript IDs: ENST00000370966.9, ENST00000456315.7
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTAAAGCATTTAGGCCATTaGTTCTCACAGTTGGCTGAA | + |
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Preference number: 2 (lower is better) Translates to: VAVDFASYIPRKQLPPNLKHLGH*FSQLAE Trigger: TTCAGCCAACTGTGAGAATCAATGGCCTAAATGCTT...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR TCA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTAAGTGCTTATTCTATGTaGGACACTGTGCTAACACTT | + |
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Preference number: 2 (lower is better) Translates to: VAVDFASYIPRKQLPPNLSAYSM*DTVLTL Trigger: AAGTGTTAGCACAGTGTCTCACATAGAATAAGCACT...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR TCA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAAGTGCTTATTCTATGTaGGACACTGTGCTAACACTT | + |
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Preference number: 2 (lower is better) Translates to: SYIPRKQLPPNLPVNSSISAYSM*DTVLTL Trigger: AAGTGTTAGCACAGTGTCTCACATAGAATAAGCACT...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR GCA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTATTACATGCATTATCCTaGTTAATCCTCGCAATCCTA | + |
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Preference number: 2 (lower is better) Translates to: VAVDFASYIPRKQLPPNLLHALS*LILAIL Trigger: TAGGATTGCGAGGATTAAGCAGGATAATGCATGTAA...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR GCA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATATTACATGCATTATCCTaGTTAATCCTCGCAATCCTA | + |
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Preference number: 2 (lower is better) Translates to: SYIPRKQLPPNLPVNSSILHALS*LILAIL Trigger: TAGGATTGCGAGGATTAAGCAGGATAATGCATGTAA...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR CAA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATACTAATGTGTACCAGTTaGAAAACCACTAGCTTAGAG | + |
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Preference number: 3 (lower is better) Translates to: SYIPRKQLPPNLPVNSSILMCTS*KTTSLE Trigger: CTCTAAGCTAGTGGTTTTCAAACTGGTACACATTAG...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR CAA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTACTAATGTGTACCAGTTaGAAAACCACTAGCTTAGAG | + |
|
Preference number: 3 (lower is better) Translates to: VAVDFASYIPRKQLPPNLLMCTS*KTTSLE Trigger: CTCTAAGCTAGTGGTTTTCAAACTGGTACACATTAG...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR CAA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTAGAAAGGACCACATTTTaGCTAAGATCTCTTCTAGTG | + |
|
Preference number: 3 (lower is better) Translates to: VAVDFASYIPRKQLPPNLERTTF*LRSLLV Trigger: CACTAGAAGAGATCTTAGCAAAAATGTGGTCCTTTC...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR CAA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAGAAAGGACCACATTTTaGCTAAGATCTCTTCTAGTG | + |
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Preference number: 3 (lower is better) Translates to: SYIPRKQLPPNLPVNSSIERTTF*LRSLLV Trigger: CACTAGAAGAGATCTTAGCAAAAATGTGGTCCTTTC...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR CAA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTAGTCCGTAATTTTGTTTaGGTTCATGTCTGTCCAAAG | + |
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Preference number: 3 (lower is better) Translates to: VAVDFASYIPRKQLPPNLVRNFV*VHVCPK Trigger: CTTTGGACAGACATGAACCAAAACAAAATTACGGAC...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR GCA 72 bp | GTGAGACACTGTGCTAACACTTTACATGCATTATCCTaGTTAATCCTCGCAATCCTAAAAAGAGGTACTATT | + |
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Preference number: 3 (lower is better) Translates to: VRHCANTLHALS*LILAILKRGTI Trigger: AATAGTACCTCTTTTTAGGATTGCGAGGATTAAGCAGGATAATGCATGTAAAGTGTTAGCACAGTGTCTCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR CAA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTACAATTGTCCGTAATTTaGTTTTGGTTCATGTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: VAVDFASYIPRKQLPPNLQLSVI*FWFMSV Trigger: GACAGACATGAACCAAAACAAAATTACGGACAATTG...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR-3UTR CAA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATACAATTGTCCGTAATTTaGTTTTGGTTCATGTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: SYIPRKQLPPNLPVNSSIQLSVI*FWFMSV Trigger: GACAGACATGAACCAAAACAAAATTACGGACAATTG...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| CDS-3UTR TCA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAGCGCCGCGGGTCACGTaGCGCCACAGCCAGGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SYIPRKQLPPNLPVNSSIAPRVT*RHSQAR Trigger: CCGAGCCTGGCTGTGGCGTCACGTGACCCGCGGCGC...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370966.9 |
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| CDS-3UTR CCA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAGAGGGCTGCGCGGATTaGCCGCGCCGCGGGTCACGT | + |
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Preference number: 4 (lower is better) Translates to: SYIPRKQLPPNLPVNSSIEGCAD*PRRGSR Trigger: ACGTGACCCGCGGCGCGGCCAATCCGCGCAGCCCTC...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370966.9 |
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| CDS-3UTR CCA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTAGCCCGGTGGCGTCCATaGCGGCGAAGGCGACACTCA | + |
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Preference number: 4 (lower is better) Translates to: VAVDFASYIPRKQLPPNLARWRP*RRRRHS Trigger: TGAGTGTCGCCTTCGCCGCCATGGACGCCACCGGGC...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| CDS-3UTR GCA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAAATAGCATAGAGGGCTaGGCGGATTGGCCGCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: SYIPRKQLPPNLPVNSSINSIEG*ADWPRR Trigger: GCGGCGCGGCCAATCCGCGCAGCCCTCTATGCTATT...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370966.9 |
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| CDS-3UTR TCA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTAGGTATGTATCATCAGTaGCCTCGTACCCATTGCATC | + |
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Preference number: 4 (lower is better) Translates to: VAVDFASYIPRKQLPPNLGMYHQ*PRTHCI Trigger: GATGCAATGGGTACGAGGTCACTGATGATACATACC...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| CDS-3UTR TCA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAGGTATGTATCATCAGTaGCCTCGTACCCATTGCATC | + |
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Preference number: 4 (lower is better) Translates to: SYIPRKQLPPNLPVNSSIGMYHQ*PRTHCI Trigger: GATGCAATGGGTACGAGGTCACTGATGATACATACC...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR CAA 72 bp | TTTAAAATTCCTCGGGTGAGTCTAATGTGTACCAGTTaGAAAACCACTAGCTTAGAGACCTGTTCCATCATC | + |
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Preference number: 4 (lower is better) Translates to: FKIPRVSLMCTS*KTTSLETCSII Trigger: GATGATGGAACAGGTCTCTAAGCTAGTGGTTTTCAAACTGGTACACATTAGACTCACCCGAGGAATTTTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| CDS-3UTR TCA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTAAATCTGCGATTGTTCTaGATACATCTCGTTCAAATC | + |
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Preference number: 4 (lower is better) Translates to: VAVDFASYIPRKQLPPNLNLRLF*IHLVQI Trigger: GATTTGAACGAGATGTATTCAGAACAATCGCAGATT...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| CDS-3UTR CCA 90 bp | GTAGCAGTTGATTTTGCTTCTTATATCCCGAGAAAGCAACTACCACCAAATCTAAGAAAGGTAAGTCAGTaGGAAATTCCATGTACATTC | + |
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Preference number: 4 (lower is better) Translates to: VAVDFASYIPRKQLPPNLRKVSQ*EIPCTF Trigger: GAATGTACATGGAATTTCCCACTGACTTACCTTTCT...TAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| CDS-3UTR CCA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAAGAAAGGTAAGTCAGTaGGAAATTCCATGTACATTC | + |
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Preference number: 4 (lower is better) Translates to: SYIPRKQLPPNLPVNSSIRKVSQ*EIPCTF Trigger: GAATGTACATGGAATTTCCCACTGACTTACCTTTCT...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| 3UTR CAA 72 bp | AAGATAGTTAATAAGGCTCATCAATTGTCCGTAATTTaGTTTTGGTTCATGTCTGTCCAAAGCAACAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: KIVNKAHQLSVI*FWFMSVQSNRK Trigger: CTTTCTGTTGCTTTGGACAGACATGAACCAAAACAAAATTACGGACAATTGATGAGCCTTATTAACTATCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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| CDS-3UTR CAA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAAGAGGGCTGCGCGGATaGGCCGCGCCGCGGGTCACG | + |
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Preference number: 5 (lower is better) Translates to: SYIPRKQLPPNLPVNSSIRGLRG*AAPRVT Trigger: CGTGACCCGCGGCGCGGCCAATCCGCGCAGCCCTCT...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370966.9 |
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| CDS-3UTR CAA 90 bp | TCTTATATCCCGAGAAAGCAACTACCACCAAATCTACCAGTCAACTCATCTATAGTCCGTAATTTTGTTTaGGTTCATGTCTGTCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: SYIPRKQLPPNLPVNSSIVRNFV*VHVCPK Trigger: CTTTGGACAGACATGAACCAAAACAAAATTACGGAC...TATAGATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370966.9 ENST00000456315.7 |
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