Pregenerated sensors for DENR (Homo sapiens)
Ensembl gene IDs: ENSG00000139726Ensembl transcript IDs: ENST00000280557.11, ENST00000537955.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATAGCTCAAACAACTCCTACCAACAGTTATGTTATTGTGCCCACAGGGTGGACTAGCACTTTGGGAGGCTaGGGTGGGCCAATCACGAGG | + |
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Preference number: 2 (lower is better) Translates to: IAQTTPTNSYVIVPTGWTSTLGG*GGPITR Trigger: CCTCGTGATTGGCCCACCTCAGCCTCCCAAAGTGCT...AGTCCACCCTGTGGGCACAATAACATAACTGTTGGTAGGAGTTGTTTGAGCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| 3UTR-3UTR CAA 90 bp | GGGGTACTCCACTTGACATTACCAAACATGCTTCCAAATAATCTTAGAAAATATCCAACAGTTATGTTATaGTGCCCACAGGGTGGACTT | + |
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Preference number: 3 (lower is better) Translates to: GVLHLTLPNMLPNNLRKYPTVML*CPQGGL Trigger: AAGTCCACCCTGTGGGCACAATAACATAACTGTTGG...ATATTTTCTAAGATTATTTGGAAGCATGTTTGGTAATGTCAAGTGGAGTACCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS-3UTR TCA 90 bp | GGGGTACTCCACTTGACATTACCAAACATGCTTCCAAATAATCTTAGAAAATATGCCGCTATCGCCAGCTaGACCAACACATGCAACTCG | + |
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Preference number: 4 (lower is better) Translates to: GVLHLTLPNMLPNNLRKYAAIAS*TNTCNS Trigger: CGAGTTGCATGTGTTGGTTCAGCTGGCGATAGCGGC...ATATTTTCTAAGATTATTTGGAAGCATGTTTGGTAATGTCAAGTGGAGTACCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS-3UTR GCA 90 bp | ATAGCTCAAACAACTCCTACCAACAGTTATGTTATTGTGCCCACAGGGTGGACTACAGTTATGTTATTGTaGCCACAGGGTGGACTTCAT | + |
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Preference number: 4 (lower is better) Translates to: IAQTTPTNSYVIVPTGWTTVMLL*PQGGLH Trigger: ATGAAGTCCACCCTGTGGGCACAATAACATAACTGT...AGTCCACCCTGTGGGCACAATAACATAACTGTTGGTAGGAGTTGTTTGAGCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS-3UTR TCA 90 bp | CGGGTTCAAACAGCGCACATACATGGTTTTAAGGCTTTTAGTATACTTTACCAACTGGGGTACTCCACTTaGCATTACCAAACATGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: RVQTAHIHGFKAFSILYQLGYST*HYQTCF Trigger: GAAGCATGTTTGGTAATGTCAAGTGGAGTACCCCAG...TTGGTAAAGTATACTAAAAGCCTTAAAACCATGTATGTGCGCTGTTTGAACCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS-3UTR CCA 90 bp | CGGGTTCAAACAGCGCACATACATGGTTTTAAGGCTTTTAGTATACTTTACCAACTAATGTCAAAGAAGTaGCTTACGGGTTCAAACAGC | + |
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Preference number: 4 (lower is better) Translates to: RVQTAHIHGFKAFSILYQLMSKK*LTGSNS Trigger: GCTGTTTGAACCCGTAAGCCACTTCTTTGACATTAG...TTGGTAAAGTATACTAAAAGCCTTAAAACCATGTATGTGCGCTGTTTGAACCCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS-3UTR GCA 90 bp | CGGGTTCAAACAGCGCACATACATGGTTTTAAGGCTTTTAGTATACTTTACCAATATTCTACCACACAATaGACCATCACTTCTTTAACC | + |
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Preference number: 4 (lower is better) Translates to: RVQTAHIHGFKAFSILYQYSTTQ*TITSLT Trigger: GGTTAAAGAAGTGATGGTGCATTGTGTGGTAGAATA...TTGGTAAAGTATACTAAAAGCCTTAAAACCATGTATGTGCGCTGTTTGAACCCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS-3UTR CCA 90 bp | GGGGTACTCCACTTGACATTACCAAACATGCTTCCAAATAATCTTAGAAAATATTGTCTAAAATGTATCTaGGGTACTCCACTTGACATT | + |
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Preference number: 4 (lower is better) Translates to: GVLHLTLPNMLPNNLRKYCLKCI*GTPLDI Trigger: AATGTCAAGTGGAGTACCCCAGATACATTTTAGACA...ATATTTTCTAAGATTATTTGGAAGCATGTTTGGTAATGTCAAGTGGAGTACCCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS-3UTR CAA 90 bp | ATAGCTCAAACAACTCCTACCAACAGTTATGTTATTGTGCCCACAGGGTGGACTTCTGGGGTACTCCACTaGACATTACCAAACATGCTT | + |
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Preference number: 5 (lower is better) Translates to: IAQTTPTNSYVIVPTGWTSGVLH*TLPNML Trigger: AAGCATGTTTGGTAATGTCAAGTGGAGTACCCCAGA...AGTCCACCCTGTGGGCACAATAACATAACTGTTGGTAGGAGTTGTTTGAGCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS-3UTR CAA 90 bp | CGGGTTCAAACAGCGCACATACATGGTTTTAAGGCTTTTAGTATACTTTACCAACCAACAGTTATGTTATaGTGCCCACAGGGTGGACTT | + |
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Preference number: 5 (lower is better) Translates to: RVQTAHIHGFKAFSILYQPTVML*CPQGGL Trigger: AAGTCCACCCTGTGGGCACAATAACATAACTGTTGG...TTGGTAAAGTATACTAAAAGCCTTAAAACCATGTATGTGCGCTGTTTGAACCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000280557.11 |
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| CDS CAA 90 bp | CAGTCCTTGCCATCCTTAACTCATAATCTTCCAAGAAGCCCTCCTTaGACAGCTAGACTAGCATACACCTTGAGGACCTTCAGGCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: QSLPSLTHNLPRSPP*TARLAYTLRTFRLK Trigger: TTTCAGCCTGAAGGTCCTCAAGGTGTATGCTAGTCTAGCTGTCAAAGGAGGGCTTCTTGGAAGATTATGAGTTAAGGATGGCAAGGACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000537955.1 |
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| CDS TCA 72 bp | CCCAGGACTCCTCTCCCCCAGTACAAACTCACCAAATaGAAAGGATGGGGAAGAAAGCTTACCAAATGTCAA | + |
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Preference number: 6 (lower is better) Translates to: PRTPLPQYKLTK*KGWGRKLTKCQ Trigger: TTGACATTTGGTAAGCTTTCTTCCCCATCCTTTTCATTTGGTGAGTTTGTACTGGGGGAGAGGAGTCCTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000537955.1 |
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| CDS CAA 72 bp | CCATCCTTAACTCATAATCTTCCAAGAAGCCCTCCTTaGACAGCTAGACTAGCATACACCTTGAGGACCTTC | + |
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Preference number: 6 (lower is better) Translates to: PSLTHNLPRSPP*TARLAYTLRTF Trigger: GAAGGTCCTCAAGGTGTATGCTAGTCTAGCTGTCAAAGGAGGGCTTCTTGGAAGATTATGAGTTAAGGATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000537955.1 |
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