Pregenerated sensors for DEGS1 (Homo sapiens)
Ensembl gene IDs: ENSG00000143753Ensembl transcript IDs: ENST00000323699.9, ENST00000391877.3
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGTGCCAGGGGAGCTTCTaGGCATCACTGGTCTCAAGT | + |
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Preference number: 2 (lower is better) Translates to: CLKARFTSWYHRALTLKLCQGSF*ASLVSS Trigger: ACTTGAGACCAGTGATGCTCAGAAGCTCCCCTGGCA...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGACCGAGCTCTTACTCTaGAATTGTGCCAGGGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: MSETSSMTIIHKSQVSCETELLL*NCARGA Trigger: AGCTCCCCTGGCACAATTTCAGAGTAAGAGCTCGGT...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| 3UTR-3UTR CCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGGCCAGATTCACTTCTTaGTATCACCGAGCTCTTACT | + |
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Preference number: 2 (lower is better) Translates to: MSETSSMTIIHKSQVSCEARFTS*YHRALT Trigger: AGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGC...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| 3UTR-3UTR CCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTTATCATCTAAAGTTTTaGAGAAGAATCCCTTTGGCA | + |
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Preference number: 2 (lower is better) Translates to: LFKSQIHFLVSPSSYSEIYHLKF*RRIPLA Trigger: TGCCAAAGGGATTCTTCTCCAAAACTTTAGATGATA...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| 3UTR TCA 72 bp | CCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTaGAATTGTGCCAGGGGAGCTTCTGAGCATCACTGG | + |
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Preference number: 3 (lower is better) Translates to: PDSLLGITELLL*NCARGASEHHW Trigger: CCAGTGATGCTCAGAAGCTCCCCTGGCACAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| 3UTR-3UTR CAA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGTTATCATCTAAAGTTTaGGAGAAGAATCCCTTTGGC | + |
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Preference number: 3 (lower is better) Translates to: CLKARFTSWYHRALTLKLLSSKV*EKNPFG Trigger: GCCAAAGGGATTCTTCTCCAAAACTTTAGATGATAA...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGAGACGCGGCTCCCCATaGCGACAGCGGTGGCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: MSETSSMTIIHKSQVSCERRGSP*RQRWLA Trigger: TGCAAGCCACCGCTGTCGCCATGGGGAGCCGCGTCT...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR GCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGGTCACTGCAGCCTCTaGCTCCGCCTCCTGGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEIGHCSL*LRLLGS Trigger: TGAACCCAGGAGGCGGAGGCAGAGGCTGCAGTGACC...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR GCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGGCGACAGCGGTGGCTTaGAGACTAGCTGTCGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: MSETSSMTIIHKSQVSCEATAVA*RLAVGS Trigger: AGAGCCGACAGCTAGTCTGCAAGCCACCGCTGTCGC...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR GCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTACAATCTTGGGTCACTaGAGCCTCTGCCTCCGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEITILGH*SLCLRL Trigger: GAGGCGGAGGCAGAGGCTGCAGTGACCCAAGATTGT...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR GCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTTTGCCCAGGGTGGAGTaGAGTGGCACAATCTTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEILPRVE*SGTILG Trigger: ACCCAAGATTGTGCCACTGCACTCCACCCTGGGCAA...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CCA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGAGCCTCCCATGTAGCTaGGATTACAGGCATGTGCCG | + |
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Preference number: 4 (lower is better) Translates to: CLKARFTSWYHRALTLKLSLPCS*DYRHVP Trigger: CGGCACATGCCTGTAATCCCAGCTACATGGGAGGCT...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGCAGGGTGGAGTGCAGTaGCACAATCTTGGGTCACTG | + |
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Preference number: 4 (lower is better) Translates to: MSETSSMTIIHKSQVSCEQGGVQ*HNLGSL Trigger: CAGTGACCCAAGATTGTGCCACTGCACTCCACCCTG...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR TCA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGACCGAGCTCTTACTCTaGAATTGTGCCAGGGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: CLKARFTSWYHRALTLKLTELLL*NCARGA Trigger: AGCTCCCCTGGCACAATTTCAGAGTAAGAGCTCGGT...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR TCA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGCATAGGCCCCAAATATaGCCCATTTCCAGTCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: CLKARFTSWYHRALTLKLHRPQI*PISSPS Trigger: ACTTGGACTGGAAATGGGTCATATTTGGGGCCTATG...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR GCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTACATTGCTTTGCAGTTaGCAAAGGCAGCATTGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEITLLCS*QRQHCG Trigger: CCCACAATGCTGCCTTTGGCAACTGCAAAGCAATGT...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR GCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTTGTCCAGAAATTGGGTaGAAACCCAGGCCAAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEICPEIG*KPRPSK Trigger: TTTACTTGGCCTGGGTTTGCACCCAATTTCTGGACA...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTAAAATGTCCAGAAATTaGGTGCAAACCCAGGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEIKMSRN*VQTQAK Trigger: CTTGGCCTGGGTTTGCACCCAATTTCTGGACATTTT...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGCCAGATTCACTTCTTaGTATCACCGAGCTCTTACT | + |
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Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEIARFTS*YHRALT Trigger: AGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGC...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGATGAGCCACCGTGCCTaGCGAAATAGCTTTTTAGAA | + |
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Preference number: 4 (lower is better) Translates to: MSETSSMTIIHKSQVSCEMSHRA*RNSFLE Trigger: TTCTAAAAAGCTATTTCGCCAGGCACGGTGGCTCAT...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR TCA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGCAGAGGCCCATAATATaGGTAAGTTTCATGACCCTT | + |
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Preference number: 4 (lower is better) Translates to: CLKARFTSWYHRALTLKLQRPII*VSFMTL Trigger: AAGGGTCATGAAACTTACTCATATTATGGGCCTCTG...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR TCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGTGCCTCTTCATTCTTaGGTAGGGACTTATTGTATC | + |
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Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEIVPLHS*VGTYCI Trigger: GATACAATAAGTCCCTACTCAAGAATGAAGAGGCAC...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR TCA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTAGTACAGAGTCAGGCTaGCTGTTTAAAAGCCAGATT | + |
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Preference number: 4 (lower is better) Translates to: LFKSQIHFLVSPSSYSEISTESG*LFKSQI Trigger: AATCTGGCTTTTAAACAGTCAGCCTGACTCTGTACT...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR GCA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGGTCATAGTATTCAGCTaGTATTTTCCTCACCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: CLKARFTSWYHRALTLKLVIVFS*YFPHQW Trigger: CCACTGGTGAGGAAAATAGCAGCTGAATACTATGAC...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR TCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGAATGACAGACATGAGTaGAACATCCTCAATGACGAT | + |
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Preference number: 4 (lower is better) Translates to: MSETSSMTIIHKSQVSCENDRHE*NILNDD Trigger: ATCGTCATTGAGGATGTTTCACTCATGTCTGTCATT...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGTTCCAGATACGTAATTaGTTTGGGGTTGATGAACAG | + |
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Preference number: 4 (lower is better) Translates to: MSETSSMTIIHKSQVSCEFQIRN*FGVDEQ Trigger: CTGTTCATCAACCCCAAACCAATTACGTATCTGGAA...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR GCA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGCATCTCAATCTTTTATaGTATATCATACCTCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: CLKARFTSWYHRALTLKLHLNLL*YIIPQA Trigger: AGCCTGAGGTATGATATAGCATAAAAGATTGAGATG...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CCA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGTATCATCTAAAGTTTTaGAGAAGAATCCCTTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: MSETSSMTIIHKSQVSCEYHLKF*RRIPLA Trigger: TGCCAAAGGGATTCTTCTCCAAAACTTTAGATGATA...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS GCA 90 bp | AGCGGTGGCTTGCAGACTAGCTGTCGGCTCTCGCTCCCAGCCGGCTaGTCAGAGGTGGCGGCGGCGGCGGCGGCTCCCCGGCTGGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: SGGLQTSCRLSLPAG*SEVAAAAAAPRLVW Trigger: CCACACCAGCCGGGGAGCCGCCGCCGCCGCCGCCACCTCTGAGCAGCCGGCTGGGAGCGAGAGCCGACAGCTAGTCTGCAAGCCACCGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS GCA 90 bp | AAGTCTTCCCGCGAGACGCGGCTCCCCATGGCGACAGCGGTGGCTTaGAGACTAGCTGTCGGCTCTCGCTCCCAGCCGGCTGCTCAGAGG | + |
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Preference number: 5 (lower is better) Translates to: KSSRETRLPMATAVA*RLAVGSRSQPAAQR Trigger: CCTCTGAGCAGCCGGCTGGGAGCGAGAGCCGACAGCTAGTCTGCAAGCCACCGCTGTCGCCATGGGGAGCCGCGTCTCGCGGGAAGACTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000323699.9 ENST00000391877.3 |
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| CDS-3UTR CAA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGGGCGACAGCGGTGGCTaGCAGACTAGCTGTCGGCTC | + |
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Preference number: 5 (lower is better) Translates to: MSETSSMTIIHKSQVSCEGDSGG*QTSCRL Trigger: GAGCCGACAGCTAGTCTGCAAGCCACCGCTGTCGCC...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CAA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGTTATCTCTGGATACTTaGCCAGGATCTCCCGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: CLKARFTSWYHRALTLKLLSLDT*PGSPGA Trigger: GGCGCCGGGAGATCCTGGCAAAGTATCCAGAGATAA...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CAA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGCACATTGCTTTGCAGTaGCCAAAGGCAGCATTGTGG | + |
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Preference number: 5 (lower is better) Translates to: CLKARFTSWYHRALTLKLHIALQ*PKAALW Trigger: CCACAATGCTGCCTTTGGCAACTGCAAAGCAATGTG...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CAA 90 bp | CTGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTAGCCAGATTCACTTCTaGGTATCACCGAGCTCTTAC | + |
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Preference number: 5 (lower is better) Translates to: LFKSQIHFLVSPSSYSEISQIHF*VSPSSY Trigger: GTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCT...AATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CAA 90 bp | TGTTTAAAAGCCAGATTCACTTCTTGGTATCACCGAGCTCTTACTCTGAAATTGACCTGTGCCACGGTATaGATAACTTCCAGATACGTA | + |
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Preference number: 5 (lower is better) Translates to: CLKARFTSWYHRALTLKLTCATV*ITSRYV Trigger: TACGTATCTGGAAGTTATCAATACCGTGGCACAGGT...CAATTTCAGAGTAAGAGCTCGGTGATACCAAGAAGTGAATCTGGCTTTTAAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CAA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGGGTGCCTCTTCATTCTaGAGTAGGGACTTATTGTAT | + |
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Preference number: 5 (lower is better) Translates to: MSETSSMTIIHKSQVSCEGASSF*SRDLLY Trigger: ATACAATAAGTCCCTACTCAAGAATGAAGAGGCACC...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CAA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGTGGAGAAGAATCCCTTaGGCACTAATGATATTTACT | + |
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Preference number: 5 (lower is better) Translates to: MSETSSMTIIHKSQVSCEWRRIP*ALMIFT Trigger: AGTAAATATCATTAGTGCCAAAGGGATTCTTCTCCA...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS-3UTR CAA 90 bp | ATGAGTGAAACATCCTCAATGACGATAATACACAAGTCACAAGTTTCCTGTGAGTTATCATCTAAAGTTTaGGAGAAGAATCCCTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: MSETSSMTIIHKSQVSCELSSKV*EKNPFG Trigger: GCCAAAGGGATTCTTCTCCAAAACTTTAGATGATAA...CTCACAGGAAACTTGTGACTTGTGTATTATCGTCATTGAGGATGTTTCACTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS CCA 72 bp | GCTGTCGGCTCTCGCTCCCAGCCGGCTGCTCAGAGGTaGCGGCGGCGGCGGCGGCTCCCCGGCTGGTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: AVGSRSQPAAQR*RRRRRLPGWCG Trigger: ACCACACCAGCCGGGGAGCCGCCGCCGCCGCCGCCACCTCTGAGCAGCCGGCTGGGAGCGAGAGCCGACAGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS GCA 72 bp | TTGCAGACTAGCTGTCGGCTCTCGCTCCCAGCCGGCTaGTCAGAGGTGGCGGCGGCGGCGGCGGCTCCCCGG | + |
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Preference number: 6 (lower is better) Translates to: LQTSCRLSLPAG*SEVAAAAAAPR Trigger: CCGGGGAGCCGCCGCCGCCGCCGCCACCTCTGAGCAGCCGGCTGGGAGCGAGAGCCGACAGCTAGTCTGCAA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000323699.9 |
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| CDS CAA 72 bp | CCGCGAGACGCGGCTCCCCATGGCGACAGCGGTGGCTaGCAGACTAGCTGTCGGCTCTCGCTCCCAGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: PRDAAPHGDSGG*QTSCRLSLPAG Trigger: GCCGGCTGGGAGCGAGAGCCGACAGCTAGTCTGCAAGCCACCGCTGTCGCCATGGGGAGCCGCGTCTCGCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000323699.9 ENST00000391877.3 |
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| CDS GCA 72 bp | CGCGAGACGCGGCTCCCCATGGCGACAGCGGTGGCTTaGAGACTAGCTGTCGGCTCTCGCTCCCAGCCGGCT | + |
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Preference number: 6 (lower is better) Translates to: RETRLPMATAVA*RLAVGSRSQPA Trigger: AGCCGGCTGGGAGCGAGAGCCGACAGCTAGTCTGCAAGCCACCGCTGTCGCCATGGGGAGCCGCGTCTCGCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000323699.9 ENST00000391877.3 |
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| CDS CAA 90 bp | GAAGTCTTCCCGCGAGACGCGGCTCCCCATGGCGACAGCGGTGGCTaGCAGACTAGCTGTCGGCTCTCGCTCCCAGCCGGCTGCTCAGAG | + |
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Preference number: 6 (lower is better) Translates to: EVFPRDAAPHGDSGG*QTSCRLSLPAGCSE Trigger: CTCTGAGCAGCCGGCTGGGAGCGAGAGCCGACAGCTAGTCTGCAAGCCACCGCTGTCGCCATGGGGAGCCGCGTCTCGCGGGAAGACTTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000323699.9 ENST00000391877.3 |
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| CDS CAA 72 bp | TGCCGCCACGCCCGGCTAATTTTTGCATCTAAAGTTTaGGAGAAGAATCCCTTTGGCACTAATGATATTTAC | + |
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Preference number: 6 (lower is better) Translates to: CRHARLIFASKV*EKNPFGTNDIY Trigger: GTAAATATCATTAGTGCCAAAGGGATTCTTCTCCAAAACTTTAGATGCAAAAATTAGCCGGGCGTGGCGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000391877.3 |
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