Pregenerated sensors for DDX6 (Homo sapiens)
Ensembl gene IDs: ENSG00000110367Ensembl transcript IDs: ENST00000531971.1, ENST00000534980.7, ENST00000620157.4
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TGTGGCACCACGCAGTCTAAAGTTGGTGAAGGAGACTaGACTTTTTGTTTAGTCACCCACACGTTCTCTAGC | + |
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Preference number: 3 (lower is better) Translates to: CGTTQSKVGEGD*TFCLVTHTFSS Trigger: GCTAGAGAACGTGTGGGTGACTAAACAAAAAGTGCAGTCTCCTTCACCAACTTTAGACTGCGTGGTGCCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000534980.7 ENST00000620157.4 |
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| CDS CCA 90 bp | CCCACGCCCCAAACACACACACTTCTGACCATAAACACAAAAGGTTaGGGCTCTGCAATCTTATCTGCGCAATATGAGCCAGCAACCGCT | + |
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Preference number: 5 (lower is better) Translates to: PTPQTHTLLTINTKG*GSAILSAQYEPATA Trigger: AGCGGTTGCTGGCTCATATTGCGCAGATAAGATTGCAGAGCCCCAACCTTTTGTGTTTATGGTCAGAAGTGTGTGTGTTTGGGGCGTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS TCA 90 bp | CCTAGCGGAGTTAATTACAGCACTTCACAGATCGTAGTTAGCAATTaGCAGTTTCACACCCAAAACAGTATCGTCATCGCCAACAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: PSGVNYSTSQIVVSN*QFHTQNSIVIANKS Trigger: GCTCTTGTTGGCGATGACGATACTGTTTTGGGTGTGAAACTGTCAATTGCTAACTACGATCTGTGAAGTGCTGTAATTAACTCCGCTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS CCA 72 bp | TTCACTCACGTCAATCTCCTCCGCTGCCCGCTCTCGTaGCGCCGCCGAAGTCGCCGCCTGGCTGAGCTAACT | + |
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Preference number: 6 (lower is better) Translates to: FTHVNLLRCPLS*RRRSRRLAELT Trigger: AGTTAGCTCAGCCAGGCGGCGACTTCGGCGGCGCCACGAGAGCGGGCAGCGGAGGAGATTGACGTGAGTGAA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534980.7 |
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| CDS GCA 72 bp | CTGCAACCTCCACCACGCAGGTTCAAGCGATCCTCATaGCTTAGCCTCCCAAGTAGCTTGGTGGGATTACAG | + |
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Preference number: 6 (lower is better) Translates to: LQPPPRRFKRSS*LSLPSSLVGLQ Trigger: CTGTAATCCCACCAAGCTACTTGGGAGGCTAAGGCATGAGGATCGCTTGAACCTGCGTGGTGGAGGTTGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS CAA 90 bp | CCACGCAGGTTCAAGCGATCCTCATGCCTTAGCCTCCCAAGTAGCTaGGTGGGATTACAGGTCTGGCTAATTTCTGTATTTTTCAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: PRRFKRSSCLSLPSS*VGLQVWLISVFFSR Trigger: TCTACTGAAAAATACAGAAATTAGCCAGACCTGTAATCCCACCAAGCTACTTGGGAGGCTAAGGCATGAGGATCGCTTGAACCTGCGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS CAA 72 bp | TCAGCGATATCACGCAGTTCACAGAGACTTAGCTGTTaGCAGAGCACTAAGAGGATGAAAAGGGCAACCTCT | + |
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Preference number: 6 (lower is better) Translates to: SAISRSSQRLSC*QSTKRMKRATS Trigger: AGAGGTTGCCCTTTTCATCCTCTTAGTGCTCTGCAAACAGCTAAGTCTCTGTGAACTGCGTGATATCGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS CAA 72 bp | TTCAAGCGATCCTCATGCCTTAGCCTCCCAAGTAGCTaGGTGGGATTACAGGTCTGGCTAATTTCTGTATTT | + |
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Preference number: 6 (lower is better) Translates to: FKRSSCLSLPSS*VGLQVWLISVF Trigger: AAATACAGAAATTAGCCAGACCTGTAATCCCACCAAGCTACTTGGGAGGCTAAGGCATGAGGATCGCTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS TCA 72 bp | GTTAATTACAGCACTTCACAGATCGTAGTTAGCAATTaGCAGTTTCACACCCAAAACAGTATCGTCATCGCC | + |
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Preference number: 6 (lower is better) Translates to: VNYSTSQIVVSN*QFHTQNSIVIA Trigger: GGCGATGACGATACTGTTTTGGGTGTGAAACTGTCAATTGCTAACTACGATCTGTGAAGTGCTGTAATTAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS TCA 72 bp | CTTAAGCAGATATGGTTAACAGCTACTTTCCTGTATTaGCGGTTTTATATTATGATCAGCGATATCACGCAG | + |
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Preference number: 6 (lower is better) Translates to: LKQIWLTATFLY*RFYIMISDITQ Trigger: CTGCGTGATATCGCTGATCATAATATAAAACCGTCAATACAGGAAAGTAGCTGTTAACCATATCTGCTTAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS TCA 72 bp | GATTATCACATACACAAAGCTGTTTACTTCAGACTCTaGCCTCTTAAGCAGATATGGTTAACAGCTACTTTC | + |
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Preference number: 6 (lower is better) Translates to: DYHIHKAVYFRL*PLKQIWLTATF Trigger: GAAAGTAGCTGTTAACCATATCTGCTTAAGAGGTCAGAGTCTGAAGTAAACAGCTTTGTGTATGTGATAATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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| CDS GCA 72 bp | CTAAAGACCGAACGATATCATCATTACTGTCCATCATaGACAGTAAGACCTCCTATATCCTTAAATCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: LKTERYHHYCPS*TVRPPISLNPK Trigger: TTTTGGATTTAAGGATATAGGAGGTCTTACTGTGCATGATGGACAGTAATGATGATATCGTTCGGTCTTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531971.1 |
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