Pregenerated sensors for DDX43 (Homo sapiens)

Ensembl gene IDs: ENSG00000080007

Ensembl transcript IDs: ENST00000370336.5, ENST00000464221.1, ENST00000479773.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCCAATCTATCAATGGCCGATCTCCTGCAACAACATTGTTATCTGTaGTTCCATCTTTTCCAACAGAAGGTTGGAATGCAGTATCAATTC	+
Preference number: 5 (lower is better) Translates to: PNLSMADLLQQHCYL*FHLFQQKVGMQYQF Trigger: GAATTGATACTGCATTCCAACCTTCTGTTGGAAAAGATGGAAGCACAGATAACAATGTTGTTGCAGGAGATCGGCCATTGATAGATTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000370336.5
CDS CCA 90 bp	TTGCCATTTCAAACCTTCCTCTCTAATTTGATCCCAATCTATCAATaGCCGATCTCCTGCAACAACATTGTTATCTGTGCTTCCATCTTT	+
Preference number: 5 (lower is better) Translates to: LPFQTFLSNLIPIYQ*PISCNNIVICASIF Trigger: AAAGATGGAAGCACAGATAACAATGTTGTTGCAGGAGATCGGCCATTGATAGATTGGGATCAAATTAGAGAGGAAGGTTTGAAATGGCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370336.5
CDS TCA 72 bp	AAGAAAAGTAGAGTTAGGTGCTCCCTTAGAAATGCATaGTGCTCTCTTAAGGGCCGAAAAACACAGATGGCT	+
Preference number: 6 (lower is better) Translates to: KKSRVRCSLRNA*CSLKGRKTQMA Trigger: AGCCATCTGTGTTTTTCGGCCCTTAAGAGAGCATCATGCATTTCTAAGGGAGCACCTAACTCTACTTTTCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000464221.1
CDS TCA 72 bp	AGTGATCCGCAACAGCTTTTCGAGAAACGAAGACAATaGCTTTGTCTGTGGATGACATACTCTGTAGAAAAG	+
Preference number: 6 (lower is better) Translates to: SDPQQLFEKRRQ*LCLWMTYSVEK Trigger: CTTTTCTACAGAGTATGTCATCCACAGACAAAGTCATTGTCTTCGTTTCTCGAAAAGCTGTTGCGGATCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370336.5 ENST00000479773.1
CDS CCA 72 bp	CAAACCTTCCTCTCTAATTTGATCCCAATCTATCAATaGCCGATCTCCTGCAACAACATTGTTATCTGTGCT	+
Preference number: 6 (lower is better) Translates to: QTFLSNLIPIYQ*PISCNNIVICA Trigger: AGCACAGATAACAATGTTGTTGCAGGAGATCGGCCATTGATAGATTGGGATCAAATTAGAGAGGAAGGTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000370336.5
CDS CAA 72 bp	TCCGCAACAGCTTTTCGAGAAACGAAGACAATGACTTaGTCTGTGGATGACATACTCTGTAGAAAAGTTTGC	+
Preference number: 6 (lower is better) Translates to: SATAFRETKTMT*SVDDILCRKVC Trigger: GCAAACTTTTCTACAGAGTATGTCATCCACAGACAAAGTCATTGTCTTCGTTTCTCGAAAAGCTGTTGCGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370336.5 ENST00000479773.1

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