RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DCAF17 (Homo sapiens)

Ensembl gene IDs: ENSG00000115827

Ensembl transcript IDs: ENST00000339506.7, ENST00000375255.8, ENST00000431110.1, ENST00000436317.1, ENST00000468592.5, ENST00000490217.5, ENST00000493106.1, ENST00000498486.1, ENST00000539783.5, ENST00000611110.4

Found 345 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGCAGAATGAGCAGCTGTGTGACACTCTGGCGAGCTGGGAAGCATaGTTCATTGTCTCTCGCTATGTGTGGTATCCAAATTCCCCACAT +
Preference number: 1 (lower is better)
Translates to: WQNEQLCDTLASWEA*FIVSRYVWYPNSPH
Trigger: ATGTGGGGAATTTGGATACCACACATAGCGAGAGACAATGAAGCATGCTTCCCAGCTCGCCAGAGTGTCACACAGCTGCTCATTCTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR TCA 90 bp TCTCCTGTTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATaGGGTATATTTCCTGCCTGGCCTGGATGGCATTTGGACCCTGGT +
Preference number: 1 (lower is better)
Translates to: SPVCYTAHNSLLSFT*GIFPAWPGWHLDPG
Trigger: ACCAGGGTCCAAATGCCATCCAGGCCAGGCAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAACAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CCA 90 bp ACTCTGGCGAGCTGGGAAGCATGCTTCATTGTCTCTCGCTATGTGTaGTATCCAAATTCCCCACATTCTTTGCTATCTTCTGTATCTTCT +
Preference number: 1 (lower is better)
Translates to: TLASWEACFIVSRYV*YPNSPHSLLSSVSS
Trigger: AGAAGATACAGAAGATAGCAAAGAATGTGGGGAATTTGGATACCACACATAGCGAGAGACAATGAAGCATGCTTCCCAGCTCGCCAGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CCA 90 bp TGTCTAATTGAAAGTATGGGGCAATGTCTAGCACCAGGGCAGAACTaGGAAGAATTCACATCATTCTTAACATGGCATCAAGCCAAAACT +
Preference number: 1 (lower is better)
Translates to: CLIESMGQCLAPGQN*EEFTSFLTWHQAKT
Trigger: AGTTTTGGCTTGATGCCATGTTAAGAATGATGTGAATTCTTCCCAGTTCTGCCCTGGTGCTAGACATTGCCCCATACTTTCAATTAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CCA 90 bp CTACTTTTACACAGCATTGCAGCTGCTTTGAAACTCACACAACATTaGTTTCTTTCTTTAGTACTTTCACTGGCCTCTTACTGGTCTTGT +
Preference number: 1 (lower is better)
Translates to: LLLHSIAAALKLTQH*FLSLVLSLASYWSC
Trigger: ACAAGACCAGTAAGAGGCCAGTGAAAGTACTAAAGAAAGAAACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR GCA 90 bp TCATTGTCTCTCGCTATGTGTGGTATCCAAATTCCCCACATTCTTTaGTATCTTCTGTATCTTCTGGCATCTTTTTACCATCTATCTTGT +
Preference number: 1 (lower is better)
Translates to: SLSLAMCGIQIPHIL*YLLYLLASFYHLSC
Trigger: ACAAGATAGATGGTAAAAAGATGCCAGAAGATACAGAAGATAGCAAAGAATGTGGGGAATTTGGATACCACACATAGCGAGAGACAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR GCA 90 bp AGAACTGTAAGATACAAAACTTTCAATTGGTGGAAGAATGTGAAGTaGCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTAGC +
Preference number: 1 (lower is better)
Translates to: RTVRYKTFNWWKNVK*LNLSKQSGISSLGS
Trigger: GCTACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTTCCACCAATTGAAAGTTTTGTATCTTACAGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CCA 90 bp ATGACTGAAGTCTTAAGACATCCTATTCTGAAACACTCTTGGAAATaGAGAATGAACACTCTACTTTTACACAGCATTGCAGCTGCTTTG +
Preference number: 1 (lower is better)
Translates to: MTEVLRHPILKHSWK*RMNTLLLHSIAAAL
Trigger: CAAAGCAGCTGCAATGCTGTGTAAAAGTAGAGTGTTCATTCTCCATTTCCAAGAGTGTTTCAGAATAGGATGTCTTAAGACTTCAGTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CCA 90 bp TCTGACATGACTGAAGTCTTAAGACATCCTATTCTGAAACACTCTTaGAAATGGAGAATGAACACTCTACTTTTACACAGCATTGCAGCT +
Preference number: 1 (lower is better)
Translates to: SDMTEVLRHPILKHS*KWRMNTLLLHSIAA
Trigger: AGCTGCAATGCTGTGTAAAAGTAGAGTGTTCATTCTCCATTTCCAAGAGTGTTTCAGAATAGGATGTCTTAAGACTTCAGTCATGTCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR GCA 90 bp ACACTCTTGGAAATGGAGAATGAACACTCTACTTTTACACAGCATTaGAGCTGCTTTGAAACTCACACAACATTGGTTTCTTTCTTTAGT +
Preference number: 1 (lower is better)
Translates to: TLLEMENEHSTFTQH*SCFETHTTLVSFFS
Trigger: ACTAAAGAAAGAAACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGTAGAGTGTTCATTCTCCATTTCCAAGAGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR GCA 90 bp TTGGAAATGGAGAATGAACACTCTACTTTTACACAGCATTGCAGCTaGTTTGAAACTCACACAACATTGGTTTCTTTCTTTAGTACTTTC +
Preference number: 1 (lower is better)
Translates to: LEMENEHSTFTQHCS*FETHTTLVSFFSTF
Trigger: GAAAGTACTAAAGAAAGAAACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGTAGAGTGTTCATTCTCCATTTCCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CCA 90 bp ACACAACATTGGTTTCTTTCTTTAGTACTTTCACTGGCCTCTTACTaGTCTTGTTTTTCAAGATGTAAGTTTACTGAGTGGGACTATTTA +
Preference number: 1 (lower is better)
Translates to: TQHWFLSLVLSLASY*SCFSRCKFTEWDYL
Trigger: TAAATAGTCCCACTCAGTAAACTTACATCTTGAAAAACAAGACCAGTAAGAGGCCAGTGAAAGTACTAAAGAAAGAAACCAATGTTGTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 90 bp ATGAGCAGCTGTGTGACACTCTGGCGAGCTGGGAAGCATGCTTCATaGTCTCTCGCTATGTGTGGTATCCAAATTCCCCACATTCTTTGC +
Preference number: 2 (lower is better)
Translates to: MSSCVTLWRAGKHAS*SLAMCGIQIPHILC
Trigger: GCAAAGAATGTGGGGAATTTGGATACCACACATAGCGAGAGACAATGAAGCATGCTTCCCAGCTCGCCAGAGTGTCACACAGCTGCTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp CACTGCAAGGTACAGCAAAACATGTTGTTGAATGCCTGCCTGCCGGGCCACTGCCCCAGCTCAAGTATCTaGATTTGCAATAAGGTGCAA +
Preference number: 2 (lower is better)
Translates to: HCKVQQNMLLNACLPGHCPSSSI*ICNKVQ
Trigger: TTGCACCTTATTGCAAATTCAGATACTTGAGCTGGG...GCAGTGGCCCGGCAGGCAGGCATTCAACAACATGTTTTGCTGTACCTTGCAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000436317.1
3UTR-3UTR CCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTAGCTGTGTGACACTCTaGCGAGCTGGGAAGCATGCT +
Preference number: 2 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPSCVTL*RAGKHA
Trigger: AGCATGCTTCCCAGCTCGCCAGAGTGTCACACAGCT...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTGACACTCTGGCGAGCTaGGAAGCATGCTTCATTGTC +
Preference number: 2 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPDTLAS*EACFIV
Trigger: GACAATGAAGCATGCTTCCCAGCTCGCCAGAGTGTC...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTATTGGACGCAGCTGCTaGGGTGTTTGGCTAAAAGTC +
Preference number: 2 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPIGRSC*GVWLKV
Trigger: GACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAAT...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp TCTAGAATCCCTACAAGTGAAAAAGGTAGAACTCGGAACACTGCAAGGTACAGCGCTGAGCCTCTGTTCTaGGCTGACTTAACTGCAATG +
Preference number: 2 (lower is better)
Translates to: SRIPTSEKGRTRNTARYSAEPLF*ADLTAM
Trigger: CATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGC...GCTGTACCTTGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436317.1
3UTR-3UTR CCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTAGCTGTGTGACACTCTaGCGAGCTGGGAAGCATGCT +
Preference number: 2 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGSCVTL*RAGKHA
Trigger: AGCATGCTTCCCAGCTCGCCAGAGTGTCACACAGCT...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTGGTATATTTCCTGCCTaGCCTGGATGGCATTTGGAC +
Preference number: 2 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSGIFPA*PGWHLD
Trigger: GTCCAAATGCCATCCAGGCCAGGCAGGAAATATACC...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTCAGCTAGTGTCTAATTaGAAGTATGGGGCAATGTCT +
Preference number: 2 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPQLVSN*KYGAMS
Trigger: AGACATTGCCCCATACTTTCAATTAGACACTAGCTG...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp TTGTTGATCTCTAGAATCCCTACAAGTGAAAAAGGTAGAACTCGGAACACTGCAACTGCAATGACTTCTTaGGGAGTGTCCCAGCTCAAG +
Preference number: 2 (lower is better)
Translates to: LLISRIPTSEKGRTRNTATAMTS*GVSQLK
Trigger: CTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGT...TGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436317.1
3UTR-3UTR GCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTGCGAGCTGGGAAGCATaGTTCATTGTCTCTCGCTAT +
Preference number: 2 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGASWEA*FIVSRY
Trigger: ATAGCGAGAGACAATGAAGCATGCTTCCCAGCTCGC...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAGATAATAAAATGGATTaGACGCAGCTGCTGGGGTGT +
Preference number: 2 (lower is better)
Translates to: KLPCFTWACIKHSELLPIDNKMD*TQLLGC
Trigger: ACACCCCAGCAGCTGCGTCCAATCCATTTTATTATC...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATATTAAGAACTCATCAATaGCCCACCCCATCAATGACT +
Preference number: 2 (lower is better)
Translates to: KLPCFTWACIKHSELLPILRTHQ*PTPSMT
Trigger: AGTCATTGATGGGGTGGGTCATTGATGAGTTCTTAA...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATACGAAATGGAAGCAACTaGATTTCTCAAACAGGAAGC +
Preference number: 2 (lower is better)
Translates to: KLPCFTWACIKHSELLPIRNGSN*ISQTGS
Trigger: GCTTCCTGTTTGAGAAATTCAGTTGCTTCCATTTCG...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp TTGTTGATCTCTAGAATCCCTACAAGTGAAAAAGGTAGAACTCGGAACACTGCAGCCTCTGTTCTGAGCTaGCTTAACTGCAATGACTTC +
Preference number: 2 (lower is better)
Translates to: LLISRIPTSEKGRTRNTAASVLS*LNCNDF
Trigger: GAAGTCATTGCAGTTAAGTCAGCTCAGAACAGAGGC...TGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436317.1
3UTR-3UTR GCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATTGGATTGGACGCAGCTaGTGGGGTGTTTGGCTAAAA +
Preference number: 2 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYWIGRS*WGVWLK
Trigger: TTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCA...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTGCACCAGGGCAGAACTaGGAAGAATTCACATCATTC +
Preference number: 2 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGAPGQN*EEFTSF
Trigger: GAATGATGTGAATTCTTCCCAGTTCTGCCCTGGTGC...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGGCAGTGGTGACATACTaGGGGTTTCTTAGTGGTAAG +
Preference number: 2 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLAVVTY*GFLSGK
Trigger: CTTACCACTAAGAAACCCCCAGTATGTCACCACTGC...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTTTACTGTCTTTCACATaGGGTATATTTCCTGCCTGG +
Preference number: 2 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSLLSFT*GIFPAW
Trigger: CCAGGCAGGAAATATACCTCATGTGAAAGACAGTAA...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp TTGTTGATCTCTAGAATCCCTACAAGTGAAAAAGGTAGAACTCGGAACACTGCACGAAGTAGCCAATTATaGGCAGTCAGTGCTATGAGT +
Preference number: 2 (lower is better)
Translates to: LLISRIPTSEKGRTRNTARSSQL*AVSAMS
Trigger: ACTCATAGCACTGACTGCTCATAATTGGCTACTTCG...TGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436317.1
3UTR-3UTR GCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAATCAGCAATGATTGTTaGTGCTGTTTCCTTCCCTTA +
Preference number: 2 (lower is better)
Translates to: KLPCFTWACIKHSELLPIISNDC*CCFLPL
Trigger: TAAGGGAAGGAAACAGCAGCAACAATCATTGCTGAT...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR GCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTATGAGGTATATTTCCTaGCTGGCCTGGATGGCATTT +
Preference number: 2 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGMRYIS*LAWMAF
Trigger: AAATGCCATCCAGGCCAGGCAGGAAATATACCTCAT...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR GCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTGAGTGCAATGCAGAATaGACCTCTTTTCAGCGTAAC +
Preference number: 2 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGECNAE*TSFQRN
Trigger: GTTACGCTGAAAAGAGGTGCATTCTGCATTGCACTC...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATAGATTTAGGCAGTGGTaGCATACTGGGGGTTTCTTA +
Preference number: 2 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYRFRQW*HTGGFL
Trigger: TAAGAAACCCCCAGTATGTCACCACTGCCTAAATCT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTGCTGCATTGATGCTCTaGGAATGCAGAAACTTAGAT +
Preference number: 2 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGAALML*ECRNLD
Trigger: ATCTAAGTTTCTGCATTCTCAGAGCATCAATGCAGC...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR GCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTACACAGCATTGCAGCTaGTTTGAAACTCACACAACA +
Preference number: 2 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGTQHCS*FETHTT
Trigger: TGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGT...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTTCACTGGCCTCTTACTaGTCTTGTTTTTCAAGATGT +
Preference number: 2 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSSLASY*SCFSRC
Trigger: ACATCTTGAAAAACAAGACCAGTAAGAGGCCAGTGA...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 90 bp TCTACTTTTACACAGCATTGCAGCTGCTTTGAAACTCACACAACATaGGTTTCTTTCTTTAGTACTTTCACTGGCCTCTTACTGGTCTTG +
Preference number: 2 (lower is better)
Translates to: STFTQHCSCFETHTT*VSFFSTFTGLLLVL
Trigger: CAAGACCAGTAAGAGGCCAGTGAAAGTACTAAAGAAAGAAACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGTAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGCTGCATTGATGCTCTaGGAATGCAGAAACTTAGAT +
Preference number: 2 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYAALML*ECRNLD
Trigger: ATCTAAGTTTCTGCATTCTCAGAGCATCAATGCAGC...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR GCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGCACCTAGCTCAAAGCTaGAAAACACTAAACTTCTTG +
Preference number: 2 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLHLAQS*KTLNFL
Trigger: CAAGAAGTTTAGTGTTTTGCAGCTTTGAGCTAGGTG...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR GCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATAGGAAACAGAACTACTaGAGGCAAGGGTACCTTTAT +
Preference number: 2 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYRKQNY*RQGYLY
Trigger: ATAAAGGTACCCTTGCCTGCAGTAGTTCTGTTTCCT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATATGTGATGACACATTTTaGGCTCAAAATAATGTTCTC +
Preference number: 2 (lower is better)
Translates to: KLPCFTWACIKHSELLPICDDTF*AQNNVL
Trigger: GAGAACATTATTTTGAGCCCAAAATGTGTCATCACA...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAACATCATTCTTAACATaGCATCAAGCCAAAACTGAA +
Preference number: 2 (lower is better)
Translates to: KLPCFTWACIKHSELLPITSFLT*HQAKTE
Trigger: TTCAGTTTTGGCTTGATGCCATGTTAAGAATGATGT...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 90 bp AATGATTGTTGCTGCTGTTTCCTTCCCTTATTACCAGTTATTCTTTaGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGAAGC +
Preference number: 2 (lower is better)
Translates to: NDCCCCFLPLLPVIL*RLHRINVQNMRNGS
Trigger: GCTTCCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGTAATAAGGGAAGGAAACAGCAGCAACAATCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 90 bp TTCATTGTCTCTCGCTATGTGTGGTATCCAAATTCCCCACATTCTTaGCTATCTTCTGTATCTTCTGGCATCTTTTTACCATCTATCTTG +
Preference number: 2 (lower is better)
Translates to: FIVSRYVWYPNSPHS*LSSVSSGIFLPSIL
Trigger: CAAGATAGATGGTAAAAAGATGCCAGAAGATACAGAAGATAGCAAAGAATGTGGGGAATTTGGATACCACACATAGCGAGAGACAATGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGGATAATAAAATGGATTaGACGCAGCTGCTGGGGTGT +
Preference number: 2 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKDNKMD*TQLLGC
Trigger: ACACCCCAGCAGCTGCGTCCAATCCATTTTATTATC...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGAAGTCATAGTCATCTaGAGTCAACACAAGACTTTT +
Preference number: 2 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYEVIVI*SQHKTF
Trigger: AAAAGTCTTGTGTTGACTTCAGATGACTATGACTTC...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGGAAGTCATAGTCATCTaGAGTCAACACAAGACTTTT +
Preference number: 2 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWEVIVI*SQHKTF
Trigger: AAAAGTCTTGTGTTGACTTCAGATGACTATGACTTC...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGTTAAGAACTCATCAATaGCCCACCCCATCAATGACT +
Preference number: 2 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKLRTHQ*PTPSMT
Trigger: AGTCATTGATGGGGTGGGTCATTGATGAGTTCTTAA...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR TCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATATTGGTGGAAGAATGTaGAGTGCCTTAATTTGTCTA +
Preference number: 2 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYIGGRM*SALICL
Trigger: TAGACAAATTAAGGCACTTCACATTCTTCCACCAAT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTAGTAAGAACTTCTTCTaGGACTCTTTATCCACTTTT +
Preference number: 2 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGSKNFF*DSLSTF
Trigger: AAAAGTGGATAAAGAGTCCCAGAAGAAGTTCTTACT...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGACATCATTCTTAACATaGCATCAAGCCAAAACTGAA +
Preference number: 2 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLTSFLT*HQAKTE
Trigger: TTCAGTTTTGGCTTGATGCCATGTTAAGAATGATGT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 90 bp AAATGGAGAATGAACACTCTACTTTTACACAGCATTGCAGCTGCTTaGAAACTCACACAACATTGGTTTCTTTCTTTAGTACTTTCACTG +
Preference number: 2 (lower is better)
Translates to: KWRMNTLLLHSIAAA*KLTQHWFLSLVLSL
Trigger: CAGTGAAAGTACTAAAGAAAGAAACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGTAGAGTGTTCATTCTCCATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATTGTAAGTTTACTGAGTaGGACTATTTAGATACAGCT +
Preference number: 2 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYCKFTE*DYLDTA
Trigger: AGCTGTATCTAAATAGTCCCACTCAGTAAACTTACA...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp CACTGCAAGGTACAGCAAAACATGTTGTTGAATGCCTGCCTGCCGGGCCACTGCAACTGCAATGACTTCTaGAGGAGTGTCCCAGCTCAA +
Preference number: 3 (lower is better)
Translates to: HCKVQQNMLLNACLPGHCNCNDF*RSVPAQ
Trigger: TTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTT...GCAGTGGCCCGGCAGGCAGGCATTCAACAACATGTTTTGCTGTACCTTGCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436317.1
3UTR GCA 72 bp CAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTaGCTGGCCTGGATGGCATTTGGACCCTGGTCTAGT +
Preference number: 3 (lower is better)
Translates to: QLLTVFHMRYIS*LAWMAFGPWSS
Trigger: ACTAGACCAGGGTCCAAATGCCATCCAGGCCAGGCAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR GCA 72 bp GTTAACAACCATGCAGCCTACATTCCCACATACTGTTaGAACTGGCTGAAACTAAGCAGTAGCAGCTGCTCC +
Preference number: 3 (lower is better)
Translates to: VNNHAAYIPTYC*NWLKLSSSSCS
Trigger: GGAGCAGCTGCTACTGCTTAGTTTCAGCCAGTTGCAACAGTATGTGGGAATGTAGGCTGCATGGTTGTTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR TCA 72 bp TGTTACACTGCCCACAACTCCTTACTGTCTTTCACATaGGGTATATTTCCTGCCTGGCCTGGATGGCATTTG +
Preference number: 3 (lower is better)
Translates to: CYTAHNSLLSFT*GIFPAWPGWHL
Trigger: CAAATGCCATCCAGGCCAGGCAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTAGCATTGCAGCTGCTTaGAAACTCACACAACATTGG +
Preference number: 3 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPSIAAA*KLTQHW
Trigger: CCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCT...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTCATTCCCACATACTGTaGCAACTGGCTGAAACTAAG +
Preference number: 3 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPHSHIL*QLAETK
Trigger: CTTAGTTTCAGCCAGTTGCAACAGTATGTGGGAATG...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAAGCATTGCAGCTGCTTaGAAACTCACACAACATTGG +
Preference number: 3 (lower is better)
Translates to: KLPCFTWACIKHSELLPISIAAA*KLTQHW
Trigger: CCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCT...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR TCA 72 bp AGCGATGGTTTGGAAGCTATAGAGTCTGACCAGTCCTaGGCTGTACATCACAATCAGTATTCCATGAGACAA +
Preference number: 3 (lower is better)
Translates to: SDGLEAIESDQS*AVHHNQYSMRQ
Trigger: TTGTCTCATGGAATACTGATTGTGATGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCCAAACCATCGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436317.1
3UTR CCA 72 bp AGCTGGGAAGCATGCTTCATTGTCTCTCGCTATGTGTaGTATCCAAATTCCCCACATTCTTTGCTATCTTCT +
Preference number: 3 (lower is better)
Translates to: SWEACFIVSRYV*YPNSPHSLLSS
Trigger: AGAAGATAGCAAAGAATGTGGGGAATTTGGATACCACACATAGCGAGAGACAATGAAGCATGCTTCCCAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTCATTCCCACATACTGTaGCAACTGGCTGAAACTAAG +
Preference number: 3 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSHSHIL*QLAETK
Trigger: CTTAGTTTCAGCCAGTTGCAACAGTATGTGGGAATG...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR TCA 72 bp CATTTGGACCCTGGTCTAGTTAGATTTAGGCAGTGGTaGCATACTGGGGGTTTCTTAGTGGTAAGTTATATC +
Preference number: 3 (lower is better)
Translates to: HLDPGLVRFRQW*HTGGFLVVSYI
Trigger: GATATAACTTACCACTAAGAAACCCCCAGTATGTCACCACTGCCTAAATCTAACTAGACCAGGGTCCAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATACCCAGCATTTTATATTaGCATTACCACCTAGCTCAA +
Preference number: 3 (lower is better)
Translates to: KLPCFTWACIKHSELLPIPSILY*HYHLAQ
Trigger: TTGAGCTAGGTGGTAATGCAAATATAAAATGCTGGG...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTAATTCCCCACATTCTTaGCTATCTTCTGTATCTTCT +
Preference number: 3 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPNSPHS*LSSVSS
Trigger: AGAAGATACAGAAGATAGCAAAGAATGTGGGGAATT...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CCA 72 bp CACAGCATTGCAGCTGCTTTGAAACTCACACAACATTaGTTTCTTTCTTTAGTACTTTCACTGGCCTCTTAC +
Preference number: 3 (lower is better)
Translates to: HSIAAALKLTQH*FLSLVLSLASY
Trigger: GTAAGAGGCCAGTGAAAGTACTAAAGAAAGAAACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGCAGCTGCTGGGGTGTTaGGCTAAAAGTCTCTTAGGT +
Preference number: 3 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKQLLGC*AKSLLG
Trigger: ACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGTCTGCATGTTTACTTTaGTCTCTCCCTGTCTTTCCT +
Preference number: 3 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLSACLL*SLPVFP
Trigger: AGGAAAGACAGGGAGAGACAAAAGTAAACATGCAGA...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATACTCCCTTTACTTGGGTaGCCTTTATTTAACATTCTA +
Preference number: 3 (lower is better)
Translates to: KLPCFTWACIKHSELLPILPLLG*PLFNIL
Trigger: TAGAATGTTAAATAAAGGCAACCCAAGTAAAGGGAG...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTCCCAGCATTTTATATTaGCATTACCACCTAGCTCAA +
Preference number: 3 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGPSILY*HYHLAQ
Trigger: TTGAGCTAGGTGGTAATGCAAATATAAAATGCTGGG...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR-3UTR CAA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATAGGATAGGATTTGTTTaGTTTTCTCCCAGAGTTGTG +
Preference number: 3 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYRIGFV*FSPRVV
Trigger: CACAACTCTGGGAGAAAACAAAACAAATCCTATCCT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR TCA 72 bp CGGATAAATGTGCAGAACATGCGAAATGGAAGCAACTaGATTTCTCAAACAGGAAGCACAAAGAAACATTTT +
Preference number: 3 (lower is better)
Translates to: RINVQNMRNGSN*ISQTGSTKKHF
Trigger: AAAATGTTTCTTTGTGCTTCCTGTTTGAGAAATTCAGTTGCTTCCATTTCGCATGTTCTGCACATTTATCCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR GCA 72 bp GAGAATGAACACTCTACTTTTACACAGCATTGCAGCTaGTTTGAAACTCACACAACATTGGTTTCTTTCTTT +
Preference number: 3 (lower is better)
Translates to: ENEHSTFTQHCS*FETHTTLVSFF
Trigger: AAAGAAAGAAACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGTAGAGTGTTCATTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR GCA 72 bp AGATACAAAACTTTCAATTGGTGGAAGAATGTGAAGTaGCTTAATTTGTCTAAACAGAGCGGTATCTCCTCA +
Preference number: 3 (lower is better)
Translates to: RYKTFNWWKNVK*LNLSKQSGISS
Trigger: TGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTTCCACCAATTGAAAGTTTTGTATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CCA 72 bp GTCTTAAGACATCCTATTCTGAAACACTCTTGGAAATaGAGAATGAACACTCTACTTTTACACAGCATTGCA +
Preference number: 3 (lower is better)
Translates to: VLRHPILKHSWK*RMNTLLLHSIA
Trigger: TGCAATGCTGTGTAAAAGTAGAGTGTTCATTCTCCATTTCCAAGAGTGTTTCAGAATAGGATGTCTTAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp CACTGCAAGGTACAGCAAAACATGTTGTTGAATGCCTGCCTGCCGGGCCACTGCAGCAAAACATGTTGTTaGATGCCTGCCTGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: HCKVQQNMLLNACLPGHCSKTCC*MPACRA
Trigger: GGCCCGGCAGGCAGGCATTCAACAACATGTTTTGCT...GCAGTGGCCCGGCAGGCAGGCATTCAACAACATGTTTTGCTGTACCTTGCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR CCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATACCCACACTCCCGTGCTaGGCAGCCGCCGCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIPTLPC*AAAAAF
Trigger: GAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGG...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCCCAGCGCCCGCAGGATaGCCAGGTTGGTCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLPAPAG*PGWSSA
Trigger: TGCAGAGGACCAACCTGGGCATCCTGCGGGCGCTGG...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCGAAAGCAGAGCCGCTTaGACCGCCAGAGCGCGGAGA +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLESRAA*TARARR
Trigger: TCTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTC...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTGGGCAGCCGCCGCTaGCTTCGAATTTCGAGGCCC +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTLGSRR*LRISRP
Trigger: GGGCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAG...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTCCTCTGCACCACGCCTaGGTCGCGCGAGAAGCAGCC +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLPLHHA*VAREAA
Trigger: GGCTGCTTCTCGCGCGACGCAGGCGTGGTGCAGAGG...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTCCCAGGTTGGTCCTCTaGACCACGCCTGCGTCGCGC +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSPRLVL*TTPASR
Trigger: GCGCGACGCAGGCGTGGTGCAGAGGACCAACCTGGG...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTCCCAGGTTGGTCCTCTaGACCACGCCTGCGTCGCGC +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLPRLVL*TTPASR
Trigger: GCGCGACGCAGGCGTGGTGCAGAGGACCAACCTGGG...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCGCAGGATGCCCAGGTTaGTCCTCTGCACCACGCCTG +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLAGCPG*SSAPRL
Trigger: CAGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGC...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAGGCTCTCTGGCCGCTaGCAGTGCGACGCTCCGGTA +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLRLSGR*QCDAPV
Trigger: TACCGGAGCGTCGCACTGTCAGCGGCCAGAGAGCCT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCCCTTTTCGATCTaGCCCAGGCTCTCTGGCCGC +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLTPFSI*PRLSGR
Trigger: GCGGCCAGAGAGCCTGGGGCAGATCGAAAAGGGAGT...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTCCAGCGCCCGCAGGATaGCCAGGTTGGTCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSPAPAG*PGWSSA
Trigger: TGCAGAGGACCAACCTGGGCATCCTGCGGGCGCTGG...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTCTGCCCCAGGCTCTCTaGCCGCTGACAGTGCGACGC +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGLPQAL*PLTVRR
Trigger: GCGTCGCACTGTCAGCGGCCAGAGAGCCTGGGGCAG...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGGCCGGCTGCACACGTTaGGCTTCCGGGTCGGGCCCA +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWAGCTR*ASGSGP
Trigger: TGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGC...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTGCAGGATGCCCAGGTTaGTCCTCTGCACCACGCCTG +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTAGCPG*SSAPRL
Trigger: CAGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGC...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTCTGGGCAGCCGCCGCTaGCTTCGAATTTCGAGGCCC +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGLGSRR*LRISRP
Trigger: GGGCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAG...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGCCTCTGCACCACGCCTaGGTCGCGCGAGAAGCAGCC +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWPLHHA*VAREAA
Trigger: GGCTGCTTCTCGCGCGACGCAGGCGTGGTGCAGAGG...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 72 bp TGTGTGACACTCTGGCGAGCTGGGAAGCATGCTTCATaGTCTCTCGCTATGTGTGGTATCCAAATTCCCCAC +
Preference number: 4 (lower is better)
Translates to: CVTLWRAGKHAS*SLAMCGIQIPH
Trigger: GTGGGGAATTTGGATACCACACATAGCGAGAGACAATGAAGCATGCTTCCCAGCTCGCCAGAGTGTCACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATAGGCTCTCTGGCCGCTaGCAGTGCGACGCTCCGGTA +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYRLSGR*QCDAPV
Trigger: TACCGGAGCGTCGCACTGTCAGCGGCCAGAGAGCCT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTAGCAAAACATGTTGTTaGATGCCTGCCTGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPSKTCC*MPACRA
Trigger: GGCCCGGCAGGCAGGCATTCAACAACATGTTTTGCT...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTACTCCCTTTTCGATCTaGCCCAGGCTCTCTGGCCGC +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLTPFSI*PRLSGR
Trigger: GCGGCCAGAGAGCCTGGGGCAGATCGAAAAGGGAGT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTGAAAGCAGAGCCGCTTaGACCGCCAGAGCGCGGAGA +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGESRAA*TARARR
Trigger: TCTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTC...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGACACTCTGGCGAGCTaGGAAGCATGCTTCATTGTC +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNDTLAS*EACFIV
Trigger: GACAATGAAGCATGCTTCCCAGCTCGCCAGAGTGTC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTAGCTGTGTGACACTCTaGCGAGCTGGGAAGCATGCT +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTSCVTL*RAGKHA
Trigger: AGCATGCTTCCCAGCTCGCCAGAGTGTCACACAGCT...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGGGGAGGGGATAGACTaGGAGAGGGATTTAGGAAAC +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNGEGID*ERDLGN
Trigger: GTTTCCTAAATCCCTCTCCCAGTCTATCCCCTCCCC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCGGATGGCCTCCAATCTaGAAAGCATTCTCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLGWPPI*KAFSRD
Trigger: ATCCCTGGAGAATGCTTTTCAGATTGGAGGCCATCC...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGGATGGCCTCCAATCTaGAAAGCATTCTCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNGWPPI*KAFSRD
Trigger: ATCCCTGGAGAATGCTTTTCAGATTGGAGGCCATCC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTCAGATGCAACACTGCTaGCACAGCGCCGATAATTGT +
Preference number: 4 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPQMQHC*HSADNC
Trigger: ACAATTATCGGCGCTGTGTCAGCAGTGTTGCATCTG...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCGCTGAGCCTCTGTTCTaGGCTGACTTAACTGCAATG +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLAEPLF*ADLTAM
Trigger: CATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGC...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCGAGTCTGACCAGTCCTaGGCTGTACATCACAATCAG +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLESDQS*AVHHNQ
Trigger: CTGATTGTGATGTACAGCTCAGGACTGGTCAGACTC...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTGAGTCTGACCAGTCCTaGGCTGTACATCACAATCAG +
Preference number: 4 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPESDQS*AVHHNQ
Trigger: CTGATTGTGATGTACAGCTCAGGACTGGTCAGACTC...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTGGAAGCTATAGAGTCTaGCCAGTCCTGAGCTGTACA +
Preference number: 4 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPGSYRV*PVLSCT
Trigger: TGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCC...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGCGAGCTGGGAAGCATaGTTCATTGTCTCTCGCTAT +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNASWEA*FIVSRY
Trigger: ATAGCGAGAGACAATGAAGCATGCTTCCCAGCTCGC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATATTGGACGCAGCTGCTaGGGTGTTTGGCTAAAAGTC +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNIGRSC*GVWLKV
Trigger: GACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAAT...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTGTTATACCTGAGGGGTaGGGAGGGGATAGACTGGGA +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSVIPEG*GGDRLG
Trigger: TCCCAGTCTATCCCCTCCCCACCCCTCAGGTATAAC...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAGCATTCTCCAGGGATaGCACCTCAAAGAGCAGTGG +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLSILQG*HLKEQW
Trigger: CCACTGCTCTTTGAGGTGTCATCCCTGGAGAATGCT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATCAGTGGAAATCCAGGTaGGCTTTTCCTTCAGCATCT +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNQWKSR*AFPSAS
Trigger: AGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTG...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTACTGCAATGACTTCTTaGGGAGTGTCCCAGCTCAAG +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTTAMTS*GVSQLK
Trigger: CTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGT...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTGCCTCTGTTCTGAGCTaGCTTAACTGCAATGACTTC +
Preference number: 4 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPASVLS*LNCNDF
Trigger: GAAGTCATTGCAGTTAAGTCAGCTCAGAACAGAGGC...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTAGCAAAACATGTTGTTaGATGCCTGCCTGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGSKTCC*MPACRA
Trigger: GGCCCGGCAGGCAGGCATTCAACAACATGTTTTGCT...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTTTTCTTGGCTCAGATaGAACACTGCTGACACAGCG +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNFSWLR*NTADTA
Trigger: CGCTGTGTCAGCAGTGTTGCATCTGAGCCAAGAAAA...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAAACATGTTGTTGAATaGCTGCCTGCCGGGCCACTG +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLKHVVE*LPAGPL
Trigger: CAGTGGCCCGGCAGGCAGGCATTCAACAACATGTTT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTTGGATTGGACGCAGCTaGTGGGGTGTTTGGCTAAAA +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTWIGRS*WGVWLK
Trigger: TTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCA...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAATTTAGTACTTTCCTaGCACACCAGCGCCCGCAGG +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLNLVLS*HTSARR
Trigger: CCTGCGGGCGCTGGTGTGCCAGGAAAGTACTAAATT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGCACCAGGGCAGAACTaGGAAGAATTCACATCATTC +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNAPGQN*EEFTSF
Trigger: GAATGATGTGAATTCTTCCCAGTTCTGCCCTGGTGC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTGGTATATTTCCTGCCTaGCCTGGATGGCATTTGGAC +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTGIFPA*PGWHLD
Trigger: GTCCAAATGCCATCCAGGCCAGGCAGGAAATATACC...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTAGCATTCTCCAGGGATaGCACCTCAAAGAGCAGTGG +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGSILQG*HLKEQW
Trigger: CCACTGCTCTTTGAGGTGTCATCCCTGGAGAATGCT...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCAGTGGAAATCCAGGTaGGCTTTTCCTTCAGCATCT +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTQWKSR*AFPSAS
Trigger: AGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTG...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATACAGTGGAAATCCAGGTaGGCTTTTCCTTCAGCATCT +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIQWKSR*AFPSAS
Trigger: AGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTG...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCGGTAAACATAGCAGCTaGAGACTCTGTTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLGKHSS*RLCWVS
Trigger: AGAAACCCAACAGAGTCTTCAGCTGCTATGTTTACC...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGAGCAGTCAGTGCTATaGGTGAGGACTTATAATCTG +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNEQSVL*VRTYNL
Trigger: CAGATTATAAGTCCTCACTCATAGCACTGACTGCTC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTACTGCAATGACTTCTTaGGGAGTGTCCCAGCTCAAG +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSTAMTS*GVSQLK
Trigger: CTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGT...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAGCCTCTGTTCTGAGCTaGCTTAACTGCAATGACTTC +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIASVLS*LNCNDF
Trigger: GAAGTCATTGCAGTTAAGTCAGCTCAGAACAGAGGC...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTGCTGAGCCTCTGTTCTaGGCTGACTTAACTGCAATG +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLAEPLF*ADLTAM
Trigger: CATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGC...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGACCCACCCCATCAATaGCTTAACTCCTCAACAATT +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNDPPHQ*LNSSTI
Trigger: AATTGTTGAGGAGTTAAGTCATTGATGGGGTGGGTC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATACTCTGTTGGGTTTCTaGTCTATGTGTAGCACCAAG +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNTLLGF*SMCSTK
Trigger: CTTGGTGCTACACATAGAGCAGAAACCCAACAGAGT...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR GCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTTTTTCTTGGCTCAGATaGAACACTGCTGACACAGCG +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTFSWLR*NTADTA
Trigger: CGCTGTGTCAGCAGTGTTGCATCTGAGCCAAGAAAA...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TTGTTGATCTCTAGAATCCCTACAAGTGAAAAAGGTAGAACTCGGAACACTGCAAAACATGTTGTTGAATaGCTGCCTGCCGGGCCACTG +
Preference number: 4 (lower is better)
Translates to: LLISRIPTSEKGRTRNTAKHVVE*LPAGPL
Trigger: CAGTGGCCCGGCAGGCAGGCATTCAACAACATGTTT...TGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR GCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGAAACATGTTGTTGAATaGCTGCCTGCCGGGCCACTG +
Preference number: 4 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLKHVVE*LPAGPL
Trigger: CAGTGGCCCGGCAGGCAGGCATTCAACAACATGTTT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTTGGATTGGACGCAGCTaGTGGGGTGTTTGGCTAAAA +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLWIGRS*WGVWLK
Trigger: TTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCA...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR GCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTTGGATTGGACGCAGCTaGTGGGGTGTTTGGCTAAAA +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSWIGRS*WGVWLK
Trigger: TTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCA...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTGCGAGCTGGGAAGCATaGTTCATTGTCTCTCGCTAT +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLASWEA*FIVSRY
Trigger: ATAGCGAGAGACAATGAAGCATGCTTCCCAGCTCGC...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGAGTGCAATGCAGAATaGACCTCTTTTCAGCGTAAC +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNECNAE*TSFQRN
Trigger: GTTACGCTGAAAAGAGGTGCATTCTGCATTGCACTC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AAAAAGGTAGAACTCGGAACACTGCAAGGTACAGCAAAACATGTTGTTGAATGCAATTTAGTACTTTCCTaGCACACCAGCGCCCGCAGG +
Preference number: 4 (lower is better)
Translates to: KKVELGTLQGTAKHVVECNLVLS*HTSARR
Trigger: CCTGCGGGCGCTGGTGTGCCAGGAAAGTACTAAATT...GCATTCAACAACATGTTTTGCTGTACCTTGCAGTGTTCCGAGTTCTACCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR CCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCGATAATAAAATGGATTaGACGCAGCTGCTGGGGTGT +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLDNKMD*TQLLGC
Trigger: ACACCCCAGCAGCTGCGTCCAATCCATTTTATTATC...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAGCAGTGGTGACATACTaGGGGTTTCTTAGTGGTAAG +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIAVVTY*GFLSGK
Trigger: CTTACCACTAAGAAACCCCCAGTATGTCACCACTGC...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCGTCTCTCGCTATGTGTaGTATCCAAATTCCCCACAT +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLVSRYV*YPNSPH
Trigger: ATGTGGGGAATTTGGATACCACACATAGCGAGAGAC...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTGACACTCTGGCGAGCTaGGAAGCATGCTTCATTGTC +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGDTLAS*EACFIV
Trigger: GACAATGAAGCATGCTTCCCAGCTCGCCAGAGTGTC...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTGGTAAACATAGCAGCTaGAGACTCTGTTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTGKHSS*RLCWVS
Trigger: AGAAACCCAACAGAGTCTTCAGCTGCTATGTTTACC...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTCTCATAGGCTATAGGTaGCCTGGAATGAGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSLIGYR*PGMSCP
Trigger: TGGACAACTCATTCCAGGTCACCTATAGCCTATGAG...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AACTGCAATGACTTCTTGAGGAGTGTCCCAGCTCAAGTATCTGAATTTGCAATAACTGCAATGACTTCTTaGGGAGTGTCCCAGCTCAAG +
Preference number: 4 (lower is better)
Translates to: NCNDFLRSVPAQVSEFAITAMTS*GVSQLK
Trigger: CTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGT...TATTGCAAATTCAGATACTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp TTGTTGATCTCTAGAATCCCTACAAGTGAAAAAGGTAGAACTCGGAACACTGCAGGAAGCTATAGAGTCTaGCCAGTCCTGAGCTGTACA +
Preference number: 4 (lower is better)
Translates to: LLISRIPTSEKGRTRNTAGSYRV*PVLSCT
Trigger: TGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCC...TGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATCAGCTAGTGTCTAATTaGAAGTATGGGGCAATGTCT +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNQLVSN*KYGAMS
Trigger: AGACATTGCCCCATACTTTCAATTAGACACTAGCTG...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAAGATTTAGGCAGTGGTaGCATACTGGGGGTTTCTTA +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIRFRQW*HTGGFL
Trigger: TAAGAAACCCCCAGTATGTCACCACTGCCTAAATCT...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTAGATTTAGGCAGTGGTaGCATACTGGGGGTTTCTTA +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTRFRQW*HTGGFL
Trigger: TAAGAAACCCCCAGTATGTCACCACTGCCTAAATCT...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTTACTGTCTTTCACATaGGGTATATTTCCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNLLSFT*GIFPAW
Trigger: CCAGGCAGGAAATATACCTCATGTGAAAGACAGTAA...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAACTCTGTTGGGTTTCTaGTCTATGTGTAGCACCAAG +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPITLLGF*SMCSTK
Trigger: CTTGGTGCTACACATAGAGCAGAAACCCAACAGAGT...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATACACAGCATTGCAGCTaGTTTGAAACTCACACAACA +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNTQHCS*FETHTT
Trigger: TGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGT...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACACAGCATTGCAGCTaGTTTGAAACTCACACAACA +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLTQHCS*FETHTT
Trigger: TGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGT...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCTGCTTCACCTGGGCTTaGATTAAACACTCAGAATTG +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLCFTWA*IKHSEL
Trigger: CAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCA...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATAATTTAGTACTTTCCTaGCACACCAGCGCCCGCAGG +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYNLVLS*HTSARR
Trigger: CCTGCGGGCGCTGGTGTGCCAGGAAAGTACTAAATT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCACCTCAAAGAGCAGTaGTGGCATGTCTGTGATTTT +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTHLKEQ*WHVCDF
Trigger: AAAATCACAGACATGCCACCACTGCTCTTTGAGGTG...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTGATAATAAAATGGATTaGACGCAGCTGCTGGGGTGT +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTDNKMD*TQLLGC
Trigger: ACACCCCAGCAGCTGCGTCCAATCCATTTTATTATC...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTGCACCAGGGCAGAACTaGGAAGAATTCACATCATTC +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSAPGQN*EEFTSF
Trigger: GAATGATGTGAATTCTTCCCAGTTCTGCCCTGGTGC...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTGCAGTGGTGACATACTaGGGGTTTCTTAGTGGTAAG +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSAVVTY*GFLSGK
Trigger: CTTACCACTAAGAAACCCCCAGTATGTCACCACTGC...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAGTCTCTCGCTATGTGTaGTATCCAAATTCCCCACAT +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIVSRYV*YPNSPH
Trigger: ATGTGGGGAATTTGGATACCACACATAGCGAGAGAC...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATACTTTGGAGGAAATTTaGCACAAGTTCATGCCGAAC +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNTLEEI*HKFMPN
Trigger: GTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGT...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCCTTCAGCATCTATTTaGGTAACAGCTACCACAGAA +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTPSASI*VTATTE
Trigger: TTCTGTGGTAGCTGTTACTCAAATAGATGCTGAAGG...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTGGTAAACATAGCAGCTaGAGACTCTGTTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLGKHSS*RLCWVS
Trigger: AGAAACCCAACAGAGTCTTCAGCTGCTATGTTTACC...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAATAGGTGACCTGGAATaGGTTGTCCAGACATTCTTA +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIIGDLE*VVQTFL
Trigger: TAAGAATGTCTGGACAACTCATTCCAGGTCACCTAT...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TTGTTGATCTCTAGAATCCCTACAAGTGAAAAAGGTAGAACTCGGAACACTGCACTCATAGGCTATAGGTaGCCTGGAATGAGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: LLISRIPTSEKGRTRNTALIGYR*PGMSCP
Trigger: TGGACAACTCATTCCAGGTCACCTATAGCCTATGAG...TGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp TCCATGAGACAAGGTAGCATCTGTAACGTTCCCAAAAATCTTTTTGTTGATCTCCAGATGCAACACTGCTaGCACAGCGCCGATAATTGT +
Preference number: 4 (lower is better)
Translates to: SMRQGSICNVPKNLFVDLQMQHC*HSADNC
Trigger: ACAATTATCGGCGCTGTGTCAGCAGTGTTGCATCTG...GAGATCAACAAAAAGATTTTTGGGAACGTTACAGATGCTACCTTGTCTCATGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTCGAAGTAGCCAATTATaGGCAGTCAGTGCTATGAGT +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSRSSQL*AVSAMS
Trigger: ACTCATAGCACTGACTGCTCATAATTGGCTACTTCG...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTCGAAGTAGCCAATTATaGGCAGTCAGTGCTATGAGT +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLRSSQL*AVSAMS
Trigger: ACTCATAGCACTGACTGCTCATAATTGGCTACTTCG...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCCCAGCTCAAGTATCTaGATTTGCAATAAGGTGCAA +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTPSSSI*ICNKVQ
Trigger: TTGCACCTTATTGCAAATTCAGATACTTGAGCTGGG...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TCCATGAGACAAGGTAGCATCTGTAACGTTCCCAAAAATCTTTTTGTTGATCTCGCTGAGCCTCTGTTCTaGGCTGACTTAACTGCAATG +
Preference number: 4 (lower is better)
Translates to: SMRQGSICNVPKNLFVDLAEPLF*ADLTAM
Trigger: CATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGC...GAGATCAACAAAAAGATTTTTGGGAACGTTACAGATGCTACCTTGTCTCATGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGGGAAGCTATAGAGTCTaGCCAGTCCTGAGCTGTACA +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWGSYRV*PVLSCT
Trigger: TGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCC...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTGACCCACCCCATCAATaGCTTAACTCCTCAACAATT +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSDPPHQ*LNSSTI
Trigger: AATTGTTGAGGAGTTAAGTCATTGATGGGGTGGGTC...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATACAGCTAGTGTCTAATTaGAAGTATGGGGCAATGTCT +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIQLVSN*KYGAMS
Trigger: AGACATTGCCCCATACTTTCAATTAGACACTAGCTG...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTGCATTGCAGCTGCTTTaGAACTCACACAACATTGGT +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSALQLL*NSHNIG
Trigger: ACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGC...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTTTACTGTCTTTCACATaGGGTATATTTCCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTLLSFT*GIFPAW
Trigger: CCAGGCAGGAAATATACCTCATGTGAAAGACAGTAA...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAGCTGCATTGATGCTCTaGGAATGCAGAAACTTAGAT +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIAALML*ECRNLD
Trigger: ATCTAAGTTTCTGCATTCTCAGAGCATCAATGCAGC...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCAAGTCAAGTTTCTGTTaGATGAACTGTTCAGCGATG +
Preference number: 4 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLKSSFC*MNCSAM
Trigger: CATCGCTGAACAGTTCATGCAACAGAAACTTGACTT...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATCACCTAGCTCAAAGCTaGAAAACACTAAACTTCTTG +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNHLAQS*KTLNFL
Trigger: CAAGAAGTTTAGTGTTTTGCAGCTTTGAGCTAGGTG...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAAGGAAACAGAACTACTaGAGGCAAGGGTACCTTTAT +
Preference number: 4 (lower is better)
Translates to: KLPCFTWACIKHSELLPIRKQNY*RQGYLY
Trigger: ATAAAGGTACCCTTGCCTGCAGTAGTTCTGTTTCCT...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTACTTTTACACAGCATTaGAGCTGCTTTGAAACTCAC +
Preference number: 4 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPTFTQH*SCFETH
Trigger: GTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGT...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTATGAGGTATATTTCCTaGCTGGCCTGGATGGCATTT +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLMRYIS*LAWMAF
Trigger: AAATGCCATCCAGGCCAGGCAGGAAATATACCTCAT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATATTGGACGCAGCTGCTaGGGTGTTTGGCTAAAAGTC +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYIGRSC*GVWLKV
Trigger: GACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAAT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGGGTATATTTCCTGCCTaGCCTGGATGGCATTTGGAC +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWGIFPA*PGWHLD
Trigger: GTCCAAATGCCATCCAGGCCAGGCAGGAAATATACC...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGGTTATACCTGAGGGGTaGGGAGGGGATAGACTGGGA +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKVIPEG*GGDRLG
Trigger: TCCCAGTCTATCCCCTCCCCACCCCTCAGGTATAAC...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AAAAAGGTAGAACTCGGAACACTGCAAGGTACAGCAAAACATGTTGTTGAATGCGAGCAGTCAGTGCTATaGGTGAGGACTTATAATCTG +
Preference number: 4 (lower is better)
Translates to: KKVELGTLQGTAKHVVECEQSVL*VRTYNL
Trigger: CAGATTATAAGTCCTCACTCATAGCACTGACTGCTC...GCATTCAACAACATGTTTTGCTGTACCTTGCAGTGTTCCGAGTTCTACCTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGGAGCAGTCAGTGCTATaGGTGAGGACTTATAATCTG +
Preference number: 4 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLEQSVL*VRTYNL
Trigger: CAGATTATAAGTCCTCACTCATAGCACTGACTGCTC...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp GACAAGGTAGCATCTGTAACGTTCCCAAAAATCTTTTTGTTGATCTCTAGAATCGAGTCTGACCAGTCCTaGGCTGTACATCACAATCAG +
Preference number: 4 (lower is better)
Translates to: DKVASVTFPKIFLLISRIESDQS*AVHHNQ
Trigger: CTGATTGTGATGTACAGCTCAGGACTGGTCAGACTC...GATTCTAGAGATCAACAAAAAGATTTTTGGGAACGTTACAGATGCTACCTTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATGAAGTCATAGTCATCTaGAGTCAACACAAGACTTTT +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNEVIVI*SQHKTF
Trigger: AAAAGTCTTGTGTTGACTTCAGATGACTATGACTTC...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTTTAAGAACTCATCAATaGCCCACCCCATCAATGACT +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLLRTHQ*PTPSMT
Trigger: AGTCATTGATGGGGTGGGTCATTGATGAGTTCTTAA...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTCGAAATGGAAGCAACTaGATTTCTCAAACAGGAAGC +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLRNGSN*ISQTGS
Trigger: GCTTCCTGTTTGAGAAATTCAGTTGCTTCCATTTCG...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATATTGGTGGAAGAATGTaGAGTGCCTTAATTTGTCTA +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNIGGRM*SALICL
Trigger: TAGACAAATTAAGGCACTTCACATTCTTCCACCAAT...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGACTCTGTTGGGTTTCTaGTCTATGTGTAGCACCAAG +
Preference number: 4 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLTLLGF*SMCSTK
Trigger: CTTGGTGCTACACATAGAGCAGAAACCCAACAGAGT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TCCATGAGACAAGGTAGCATCTGTAACGTTCCCAAAAATCTTTTTGTTGATCTCTTTTCTTGGCTCAGATaGAACACTGCTGACACAGCG +
Preference number: 4 (lower is better)
Translates to: SMRQGSICNVPKNLFVDLFSWLR*NTADTA
Trigger: CGCTGTGTCAGCAGTGTTGCATCTGAGCCAAGAAAA...GAGATCAACAAAAAGATTTTTGGGAACGTTACAGATGCTACCTTGTCTCATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR GCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTTGCTTCACCTGGGCTTaGATTAAACACTCAGAATTG +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLCFTWA*IKHSEL
Trigger: CAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCA...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTCACCTCAAAGAGCAGTaGTGGCATGTCTGTGATTTT +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGHLKEQ*WHVCDF
Trigger: AAAATCACAGACATGCCACCACTGCTCTTTGAGGTG...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCAGAAATTAGCTCCCTaGGATTCTAAAAGATGGATG +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTQKLAP*DSKRWM
Trigger: CATCCATCTTTTAGAATCCCAGGGAGCTAATTTCTG...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 72 bp ACTTTCAATTGGTGGAAGAATGTGAAGTGCCTTAATTaGTCTAAACAGAGCGGTATCTCCTCACTAGGTAGC +
Preference number: 4 (lower is better)
Translates to: TFNWWKNVKCLN*SKQSGISSLGS
Trigger: GCTACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTTCCACCAATTGAAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGCAGATGCAACACTGCTaGCACAGCGCCGATAATTGT +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKQMQHC*HSADNC
Trigger: ACAATTATCGGCGCTGTGTCAGCAGTGTTGCATCTG...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AAAAAGGTAGAACTCGGAACACTGCAAGGTACAGCAAAACATGTTGTTGAATGCCCCAGCTCAAGTATCTaGATTTGCAATAAGGTGCAA +
Preference number: 4 (lower is better)
Translates to: KKVELGTLQGTAKHVVECPSSSI*ICNKVQ
Trigger: TTGCACCTTATTGCAAATTCAGATACTTGAGCTGGG...GCATTCAACAACATGTTTTGCTGTACCTTGCAGTGTTCCGAGTTCTACCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTGAAGTCATAGTCATCTaGAGTCAACACAAGACTTTT +
Preference number: 4 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTEVIVI*SQHKTF
Trigger: AAAAGTCTTGTGTTGACTTCAGATGACTATGACTTC...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTTTAAGAACTCATCAATaGCCCACCCCATCAATGACT +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGLRTHQ*PTPSMT
Trigger: AGTCATTGATGGGGTGGGTCATTGATGAGTTCTTAA...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGGCATTGCAGCTGCTTTaGAACTCACACAACATTGGT +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWALQLL*NSHNIG
Trigger: ACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGC...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGGCTGCATTGATGCTCTaGGAATGCAGAAACTTAGAT +
Preference number: 4 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLAALML*ECRNLD
Trigger: ATCTAAGTTTCTGCATTCTCAGAGCATCAATGCAGC...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTACATGCCTTGCCTTTTaGGAACTTTGGAGGAAATTT +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLTCLAF*ELWRKF
Trigger: AAATTTCCTCCAAAGTTCTCAAAAGGCAAGGCATGT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATATGAGGTATATTTCCTaGCTGGCCTGGATGGCATTT +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYMRYIS*LAWMAF
Trigger: AAATGCCATCCAGGCCAGGCAGGAAATATACCTCAT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTTTAGGGCACAAATATaGAAAACTCCTTTCTGTTTC +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNFRAQI*KTPFCF
Trigger: GAAACAGAAAGGAGTTTTCCATATTTGTGCCCTAAA...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATACATTTTCATTTTTATaGTTCTCCCTGTTGGCCAAA +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNTFSFL*FSLLAK
Trigger: TTTGGCCAACAGGGAGAACCATAAAAATGAAAATGT...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000431110.1
CDS-3UTR CCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGATTGGACGCAGCTGCTaGGGTGTTTGGCTAAAAGTC +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKIGRSC*GVWLKV
Trigger: GACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAAT...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGGATAATAAAATGGATTaGACGCAGCTGCTGGGGTGT +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWDNKMD*TQLLGC
Trigger: ACACCCCAGCAGCTGCGTCCAATCCATTTTATTATC...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTGTGATGACACATTTTaGGCTCAAAATAATGTTCTC +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNCDDTF*AQNNVL
Trigger: GAGAACATTATTTTGAGCCCAAAATGTGTCATCACA...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATACATCATTCTTAACATaGCATCAAGCCAAAACTGAA +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNTSFLT*HQAKTE
Trigger: TTCAGTTTTGGCTTGATGCCATGTTAAGAATGATGT...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTGTAAGTTTACTGAGTaGGACTATTTAGATACAGCT +
Preference number: 4 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNCKFTE*DYLDTA
Trigger: AGCTGTATCTAAATAGTCCCACTCAGTAAACTTACA...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTTACAAAACTTTCAATTaGTGGAAGAATGTGAAGTGC +
Preference number: 4 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPYKTFN*WKNVKC
Trigger: GCACTTCACATTCTTCCACCAATTGAAAGTTTTGTA...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATCATGCCGAACAAATCTaGTTATGTTTCCCACCTCTG +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYHAEQI*LCFPPL
Trigger: CAGAGGTGGGAAACATAACCAGATTTGTTCGGCATG...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTGATGTAGAATCCCCGTaGTCAGTATTTACTATAAAA +
Preference number: 4 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPDVESP*SVFTIK
Trigger: TTTTATAGTAAATACTGACCACGGGGATTCTACATC...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TCCATGAGACAAGGTAGCATCTGTAACGTTCCCAAAAATCTTTTTGTTGATCTCATAGGTGACCTGGAATaGGTTGTCCAGACATTCTTA +
Preference number: 4 (lower is better)
Translates to: SMRQGSICNVPKNLFVDLIGDLE*VVQTFL
Trigger: TAAGAATGTCTGGACAACTCATTCCAGGTCACCTAT...GAGATCAACAAAAAGATTTTTGGGAACGTTACAGATGCTACCTTGTCTCATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR TCA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTGAAGTCATAGTCATCTaGAGTCAACACAAGACTTTT +
Preference number: 4 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLEVIVI*SQHKTF
Trigger: AAAAGTCTTGTGTTGACTTCAGATGACTATGACTTC...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR TCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTCACAAATATTCAATGTaGACATCAAGCCAAGAGAAC +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSHKYSM*TSSQEN
Trigger: GTTCTCTTGGCTTGATGTTCACATTGAATATTTGTG...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGCGAAATGGAAGCAACTaGATTTCTCAAACAGGAAGC +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWRNGSN*ISQTGS
Trigger: GCTTCCTGTTTGAGAAATTCAGTTGCTTCCATTTCG...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGACATGCCTTGCCTTTTaGGAACTTTGGAGGAAATTT +
Preference number: 4 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLTCLAF*ELWRKF
Trigger: AAATTTCCTCCAAAGTTCTCAAAAGGCAAGGCATGT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTTTAATAATCTGCAGTTaGAGTACTAGGGGGAAGTAT +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSLIICS*STRGKY
Trigger: ATACTTCCCCCTAGTACTTCAACTGCAGATTATTAA...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTAAGTCAAGTTTCTGTTaGATGAACTGTTCAGCGATG +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGKSSFC*MNCSAM
Trigger: CATCGCTGAACAGTTCATGCAACAGAAACTTGACTT...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGAGGAAACAGAACTACTaGAGGCAAGGGTACCTTTAT +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWRKQNY*RQGYLY
Trigger: ATAAAGGTACCCTTGCCTGCAGTAGTTCTGTTTCCT...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGATCAGCAATGATTGTTaGTGCTGTTTCCTTCCCTTA +
Preference number: 4 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLISNDC*CCFLPL
Trigger: TAAGGGAAGGAAACAGCAGCAACAATCATTGCTGAT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 72 bp TGCTGCTGTTTCCTTCCCTTATTACCAGTTATTCTTTaGAGGTTACATCGGATAAATGTGCAGAACATGCGA +
Preference number: 4 (lower is better)
Translates to: CCCFLPLLPVIL*RLHRINVQNMR
Trigger: TCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGTAATAAGGGAAGGAAACAGCAGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATACTTTTACACAGCATTaGAGCTGCTTTGAAACTCAC +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYTFTQH*SCFETH
Trigger: GTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGGAGTGCAATGCAGAATaGACCTCTTTTCAGCGTAAC +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKECNAE*TSFQRN
Trigger: GTTACGCTGAAAAGAGGTGCATTCTGCATTGCACTC...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTTGTAAGTTTACTGAGTaGGACTATTTAGATACAGCT +
Preference number: 4 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSCKFTE*DYLDTA
Trigger: AGCTGTATCTAAATAGTCCCACTCAGTAAACTTACA...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATTCACTGGCCTCTTACTaGTCTTGTTTTTCAAGATGT +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYSLASY*SCFSRC
Trigger: ACATCTTGAAAAACAAGACCAGTAAGAGGCCAGTGA...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGCATGCCGAACAAATCTaGTTATGTTTCCCACCTCTG +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKHAEQI*LCFPPL
Trigger: CAGAGGTGGGAAACATAACCAGATTTGTTCGGCATG...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGCAGAAATTAGCTCCCTaGGATTCTAAAAGATGGATG +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWQKLAP*DSKRWM
Trigger: CATCCATCTTTTAGAATCCCAGGGAGCTAATTTCTG...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 72 bp GAAGATGATTGCAATGGTCTAAATTTTGGAAAGGGTTaGGGTTACACAGGTGTATATGTCTGCAAGAACTCA +
Preference number: 4 (lower is better)
Translates to: EDDCNGLNFGKG*GYTGVYVCKNS
Trigger: TGAGTTCTTGCAGACATATACACCTGTGTAACCCAAACCCTTTCCAAAATTTAGACCATTGCAATCATCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGCCCAGCTCAAGTATCTaGATTTGCAATAAGGTGCAA +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKPSSSI*ICNKVQ
Trigger: TTGCACCTTATTGCAAATTCAGATACTTGAGCTGGG...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGCACAAATATTCAATGTaGACATCAAGCCAAGAGAAC +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWHKYSM*TSSQEN
Trigger: GTTCTCTTGGCTTGATGTTCACATTGAATATTTGTG...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGATTGGTGGAAGAATGTaGAGTGCCTTAATTTGTCTA +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWIGGRM*SALICL
Trigger: TAGACAAATTAAGGCACTTCACATTCTTCCACCAAT...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATTTAATAATCTGCAGTTaGAGTACTAGGGGGAAGTAT +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYLIICS*STRGKY
Trigger: ATACTTCCCCCTAGTACTTCAACTGCAGATTATTAA...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTTGGAAGAATGTGAAGTaGCTTAATTTGTCTAAACAG +
Preference number: 4 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGWKNVK*LNLSKQ
Trigger: CTGTTTAGACAAATTAAGGCACTTCACATTCTTCCA...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGAGTAAGAACTTCTTCTaGGACTCTTTATCCACTTTT +
Preference number: 4 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLSKNFF*DSLSTF
Trigger: AAAAGTGGATAAAGAGTCCCAGAAGAAGTTCTTACT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGTACAAAACTTTCAATTaGTGGAAGAATGTGAAGTGC +
Preference number: 4 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLYKTFN*WKNVKC
Trigger: GCACTTCACATTCTTCCACCAATTGAAAGTTTTGTA...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGACATTTTCATTTTTATaGTTCTCCCTGTTGGCCAAA +
Preference number: 4 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWTFSFL*FSLLAK
Trigger: TTTGGCCAACAGGGAGAACCATAAAAATGAAAATGT...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000375255.8
CDS-3UTR CCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATACATCATTCTTAACATaGCATCAAGCCAAAACTGAA +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYTSFLT*HQAKTE
Trigger: TTCAGTTTTGGCTTGATGCCATGTTAAGAATGATGT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGTCACTGGCCTCTTACTaGTCTTGTTTTTCAAGATGT +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKSLASY*SCFSRC
Trigger: ACATCTTGAAAAACAAGACCAGTAAGAGGCCAGTGA...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGATGTAGAATCCCCGTaGTCAGTATTTACTATAAAA +
Preference number: 4 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYDVESP*SVFTIK
Trigger: TTTTATAGTAAATACTGACCACGGGGATTCTACATC...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR TCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGCTGCTAACCATTGAATaGAGAACTACATTTTCTGTC +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKLLTIE*RTTFSV
Trigger: GACAGAAAATGTAGTTCTTCATTCAATGGTTAGCAG...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
3UTR CAA 72 bp ATGAACACTCTACTTTTACACAGCATTGCAGCTGCTTaGAAACTCACACAACATTGGTTTCTTTCTTTAGTA +
Preference number: 4 (lower is better)
Translates to: MNTLLLHSIAAA*KLTQHWFLSLV
Trigger: TACTAAAGAAAGAAACCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCTGTGTAAAAGTAGAGTGTTCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR GCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGTGGAAGAATGTGAAGTaGCTTAATTTGTCTAAACAG +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKWKNVK*LNLSKQ
Trigger: CTGTTTAGACAAATTAAGGCACTTCACATTCTTCCA...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGTTTAGGGCACAAATATaGAAAACTCCTTTCTGTTTC +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKFRAQI*KTPFCF
Trigger: GAAACAGAAAGGAGTTTTCCATATTTGTGCCCTAAA...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CCA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGAGTAAGAACTTCTTCTaGGACTCTTTATCCACTTTT +
Preference number: 4 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKSKNFF*DSLSTF
Trigger: AAAAGTGGATAAAGAGTCCCAGAAGAAGTTCTTACT...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CCA 90 bp CCCATGGAGGCGCGGGCCGGGCCCTGGGTAGGCTGGGCCGCCGAGTaGCGCGCCCCACACTCCCGTGCTGGGCAGCCGCCGCTGCCTTCG +
Preference number: 5 (lower is better)
Translates to: PMEARAGPWVGWAAE*RAPHSRAGQPPLPS
Trigger: CGAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGGGCGCGCCACTCGGCGGCCCAGCCTACCCAGGGCCCGGCCCGCGCCTCCATGGG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CCA 90 bp TTCCGGGTCGGGCCCATGGAGGCGCGGGCCGGGCCCTGGGTAGGCTaGGCCGCCGAGTGGCGCGCCCCACACTCCCGTGCTGGGCAGCCG +
Preference number: 5 (lower is better)
Translates to: FRVGPMEARAGPWVG*AAEWRAPHSRAGQP
Trigger: CGGCTGCCCAGCACGGGAGTGTGGGGCGCGCCACTCGGCGGCCCAGCCTACCCAGGGCCCGGCCCGCGCCTCCATGGGCCCGACCCGGAA
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CCA 90 bp GCGAGAAGCAGCCCAGCGCCCGGCGACTCAGCCGGCTGCACACGTTaGGCTTCCGGGTCGGGCCCATGGAGGCGCGGGCCGGGCCCTGGG +
Preference number: 5 (lower is better)
Translates to: ARSSPAPGDSAGCTR*ASGSGPWRRGPGPG
Trigger: CCCAGGGCCCGGCCCGCGCCTCCATGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCTGAGTCGCCGGGCGCTGGGCTGCTTCTCGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 90 bp CTGCGTCGCGCGAGAAGCAGCCCAGCGCCCGGCGACTCAGCCGGCTaGACACGTTGGGCTTCCGGGTCGGGCCCATGGAGGCGCGGGCCG +
Preference number: 5 (lower is better)
Translates to: LRRARSSPAPGDSAG*TRWASGSGPWRRGP
Trigger: CGGCCCGCGCCTCCATGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCTGAGTCGCCGGGCGCTGGGCTGCTTCTCGCGCGACGCAG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 90 bp CCGCCGAGTGGCGCGCCCCACACTCCCGTGCTGGGCAGCCGCCGCTaGCTTCGAATTTCGAGGCCCAGACTTTCCCGGCGGGGCCCAGGG +
Preference number: 5 (lower is better)
Translates to: PPSGAPHTPVLGSRR*LRISRPRLSRRGPG
Trigger: CCCTGGGCCCCGCCGGGAAAGTCTGGGCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGGGCGCGCCACTCGGCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 90 bp GCCCTGGGTAGGCTGGGCCGCCGAGTGGCGCGCCCCACACTCCCGTaGTGGGCAGCCGCCGCTGCCTTCGAATTTCGAGGCCCAGACTTT +
Preference number: 5 (lower is better)
Translates to: ALGRLGRRVARPTLP*WAAAAAFEFRGPDF
Trigger: AAAGTCTGGGCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGGGCGCGCCACTCGGCGGCCCAGCCTACCCAGGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 90 bp CTTTCCTGGCACACCAGCGCCCGCAGGATGCCCAGGTTGGTCCTCTaGACCACGCCTGCGTCGCGCGAGAAGCAGCCCAGCGCCCGGCGA +
Preference number: 5 (lower is better)
Translates to: LSWHTSARRMPRLVL*TTPASREKQPSARR
Trigger: TCGCCGGGCGCTGGGCTGCTTCTCGCGCGACGCAGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAGGAAAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CCA 90 bp CTGGGTAGGCTGGGCCGCCGAGTGGCGCGCCCCACACTCCCGTGCTaGGCAGCCGCCGCTGCCTTCGAATTTCGAGGCCCAGACTTTCCC +
Preference number: 5 (lower is better)
Translates to: LGRLGRRVARPTLPC*AAAAAFEFRGPDFP
Trigger: GGGAAAGTCTGGGCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGGGCGCGCCACTCGGCGGCCCAGCCTACCCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS TCA 90 bp GGAAGAAGCACTCCCTTTTCGATCTGCCCCAGGCTCTCTGGCCGCTaGCAGTGCGACGCTCCGGTACCGCGCGGCCGGCCGGAGCCGCTC +
Preference number: 5 (lower is better)
Translates to: GRSTPFSICPRLSGR*QCDAPVPRGRPEPL
Trigger: GAGCGGCTCCGGCCGGCCGCGCGGTACCGGAGCGTCGCACTGTCAGCGGCCAGAGAGCCTGGGGCAGATCGAAAAGGGAGTGCTTCTTCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 90 bp GGGCAGGGAGCACCCGACGGCGGGGCGAGGGAAAGCAGAGCCGCTTaGACCGCCAGAGCGCGGAGAGAAGGGAAGAAGCACTCCCTTTTC +
Preference number: 5 (lower is better)
Translates to: GQGAPDGGARESRAA*TARARREGKKHSLF
Trigger: GAAAAGGGAGTGCTTCTTCCCTTCTCTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTCCCTCGCCCCGCCGTCGGGTGCTCCCTGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CCA 90 bp AGAGAAGGGAAGAAGCACTCCCTTTTCGATCTGCCCCAGGCTCTCTaGCCGCTGACAGTGCGACGCTCCGGTACCGCGCGGCCGGCCGGA +
Preference number: 5 (lower is better)
Translates to: REGKKHSLFDLPQAL*PLTVRRSGTARPAG
Trigger: TCCGGCCGGCCGCGCGGTACCGGAGCGTCGCACTGTCAGCGGCCAGAGAGCCTGGGGCAGATCGAAAAGGGAGTGCTTCTTCCCTTCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAGGAAAGCAGAGCCGCTaGCACCGCCAGAGCGCGGAG +
Preference number: 5 (lower is better)
Translates to: KLPCFTWACIKHSELLPIGKQSR*HRQSAE
Trigger: CTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTCC...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGAGCCGGCTGCACACGTaGGGCTTCCGGGTCGGGCCC +
Preference number: 5 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLSRLHT*GFRVGP
Trigger: GGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCCGCAGGATGCCCAGGTaGGTCCTCTGCACCACGCCT +
Preference number: 5 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLRRMPR*VLCTTP
Trigger: AGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGCG...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGAGCCGGCTGCACACGTaGGGCTTCCGGGTCGGGCCC +
Preference number: 5 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWSRLHT*GFRVGP
Trigger: GGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCT...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTGGAAAGCAGAGCCGCTaGCACCGCCAGAGCGCGGAG +
Preference number: 5 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGGKQSR*HRQSAE
Trigger: CTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTCC...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTCGCAGGATGCCCAGGTaGGTCCTCTGCACCACGCCT +
Preference number: 5 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSRRMPR*VLCTTP
Trigger: AGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGCG...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS TCA 90 bp GTAGTGCCAAGGATGGCCTCCAATCTGAAAAGCATTCTCCAGGGATaGCACCTCAAAGAGCAGTGGTGGCATGTCTTTTTGTTGATCTCT +
Preference number: 5 (lower is better)
Translates to: VVPRMASNLKSILQG*HLKEQWWHVFLLIS
Trigger: AGAGATCAACAAAAAGACATGCCACCACTGCTCTTTGAGGTGTCATCCCTGGAGAATGCTTTTCAGATTGGAGGCCATCCTTGGCACTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000339506.7
CDS-3UTR CAA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTGGGAAGCATGCTTCATaGTCTCTCGCTATGTGTGGT +
Preference number: 5 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPGKHAS*SLAMCG
Trigger: ACCACACATAGCGAGAGACAATGAAGCATGCTTCCC...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS TCA 90 bp AGTGGTGGCATGTCTGTTCAGCGATGGTTTGGAAGCTATAGAGTCTaGCCAGTCCTGAGCTGTACATCACAATCAGTATTCCATGAGACA +
Preference number: 5 (lower is better)
Translates to: SGGMSVQRWFGSYRV*PVLSCTSQSVFHET
Trigger: TGTCTCATGGAATACTGATTGTGATGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCCAAACCATCGCTGAACAGACATGCCACCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000468592.5
ENST00000611110.4
CDS CCA 90 bp TGTTTCCAGGTAAGACATAAGAAGCGTAAAACTAAAAGCAGCTGGTaGCCCTATTACCACCTATCCCAGATTCCGGGCTTGTATCCTCCT +
Preference number: 5 (lower is better)
Translates to: CFQVRHKKRKTKSSW*PYYHLSQIPGLYPP
Trigger: AGGAGGATACAAGCCCGGAATCTGGGATAGGTGGTAATAGGGCCACCAGCTGCTTTTAGTTTTACGCTTCTTATGTCTTACCTGGAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490217.5
CDS-3UTR CAA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTAACTGCAATGACTTCTaGAGGAGTGTCCCAGCTCAA +
Preference number: 5 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPNCNDF*RSVPAQ
Trigger: TTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTT...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGCAGCAAAACATGTTGTaGAATGCCTGCCTGCCGGGC +
Preference number: 5 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLQQNML*NACLPG
Trigger: GCCCGGCAGGCAGGCATTCAACAACATGTTTTGCTG...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS TCA 90 bp CTTCTTCTTCCCCAGTGTCACATATCATCTGGTAAACATAGCAGCTaGAGACTCTGTTGGGTTTCTGCTCTATGTGTAGCACCAAGTCTC +
Preference number: 5 (lower is better)
Translates to: LLLPQCHISSGKHSS*RLCWVSALCVAPSL
Trigger: GAGACTTGGTGCTACACATAGAGCAGAAACCCAACAGAGTCTTCAGCTGCTATGTTTACCAGATGATATGTGACACTGGGGAAGAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000339506.7
ENST00000375255.8
ENST00000431110.1
ENST00000468592.5
ENST00000498486.1
ENST00000539783.5
ENST00000611110.4
CDS TCA 90 bp GAACTGTTCAGCGATGGTTTGGAAGCTATAGAGTCTGACCAGTCCTaGGCTGTACATCACAATCAGTATTCCATGAGACAAGGTAGCATC +
Preference number: 5 (lower is better)
Translates to: ELFSDGLEAIESDQS*AVHHNQYSMRQGSI
Trigger: GATGCTACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCCAAACCATCGCTGAACAGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS TCA 90 bp TGTCTGTTCAGCGATGGTTTGGAAGCTATAGAGTCTGACCAGTCCTaGGCTGTACATCACAATCAGTATTCCATGAGACAAGGTAGCATC +
Preference number: 5 (lower is better)
Translates to: CLFSDGLEAIESDQS*AVHHNQYSMRQGSI
Trigger: GATGCTACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCCAAACCATCGCTGAACAGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000468592.5
ENST00000611110.4
CDS-3UTR CAA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCAGCTGAAGACTCTGTaGGGTTTCTGCTCTATGTGT +
Preference number: 5 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTQLKTL*GFCSMC
Trigger: ACACATAGAGCAGAAACCCAACAGAGTCTTCAGCTG...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CAA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATCAGCAAAACATGTTGTaGAATGCCTGCCTGCCGGGC +
Preference number: 5 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYQQNML*NACLPG
Trigger: GCCCGGCAGGCAGGCATTCAACAACATGTTTTGCTG...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTGTACAGCAAAACATGTaGTTGAATGCCTGCCTGCCG +
Preference number: 5 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSVQQNM*LNACLP
Trigger: CGGCAGGCAGGCATTCAACAACATGTTTTGCTGTAC...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp ATCCCTACAAGTGAAAAAGGTAGAACTCGGAACACTGCAAGGTACAGCAAAACAGTACAGCAAAACATGTaGTTGAATGCCTGCCTGCCG +
Preference number: 5 (lower is better)
Translates to: IPTSEKGRTRNTARYSKTVQQNM*LNACLP
Trigger: CGGCAGGCAGGCATTCAACAACATGTTTTGCTGTAC...TGTTTTGCTGTACCTTGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR CAA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATACTGTTCAGCGATGGTTaGGAAGCTATAGAGTCTGAC +
Preference number: 5 (lower is better)
Translates to: KLPCFTWACIKHSELLPILFSDG*EAIESD
Trigger: GTCAGACTCTATAGCTTCCAAACCATCGCTGAACAG...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTCAGCTGCTGGGGTGTTaGGCTAAAAGTCTCTTAGGT +
Preference number: 5 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLQLLGC*AKSLLG
Trigger: ACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CAA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTCCTTCAGCATCTATTaGAGTAACAGCTACCACAGA +
Preference number: 5 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNSFSIY*SNSYHR
Trigger: TCTGTGGTAGCTGTTACTCAAATAGATGCTGAAGGA...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CAA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTCAGCTGAAGACTCTGTaGGGTTTCTGCTCTATGTGT +
Preference number: 5 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLQLKTL*GFCSMC
Trigger: ACACATAGAGCAGAAACCCAACAGAGTCTTCAGCTG...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CAA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAACTGCAATGACTTCTaGAGGAGTGTCCCAGCTCAA +
Preference number: 5 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLNCNDF*RSVPAQ
Trigger: TTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp GACAAGGTAGCATCTGTAACGTTCCCAAAAATCTTTTTGTTGATCTCTAGAATCCAGCAAAACATGTTGTaGAATGCCTGCCTGCCGGGC +
Preference number: 5 (lower is better)
Translates to: DKVASVTFPKIFLLISRIQQNML*NACLPG
Trigger: GCCCGGCAGGCAGGCATTCAACAACATGTTTTGCTG...GATTCTAGAGATCAACAAAAAGATTTTTGGGAACGTTACAGATGCTACCTTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR CAA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTGGGAAGCATGCTTCATaGTCTCTCGCTATGTGTGGT +
Preference number: 5 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGGKHAS*SLAMCG
Trigger: ACCACACATAGCGAGAGACAATGAAGCATGCTTCCC...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTGCCTTTTGAGAACTTaGGAGGAAATTTGGCACAAG +
Preference number: 5 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNCLLRT*EEIWHK
Trigger: CTTGTGCCAAATTTCCTCCAAAGTTCTCAAAAGGCA...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATCTTGGATCCCATTTTTaGCCTTATATCCAGAAGCAC +
Preference number: 5 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNLGSHF*PYIQKH
Trigger: GTGCTTCTGGATATAAGGCAAAAAATGGGATCCAAG...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000431110.1
CDS-3UTR CAA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATATCCTTCAGCATCTATTaGAGTAACAGCTACCACAGA +
Preference number: 5 (lower is better)
Translates to: KLPCFTWACIKHSELLPISFSIY*SNSYHR
Trigger: TCTGTGGTAGCTGTTACTCAAATAGATGCTGAAGGA...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTACAGCAAAACATGTaGTTGAATGCCTGCCTGCCG +
Preference number: 5 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYVQQNM*LNACLP
Trigger: CGGCAGGCAGGCATTCAACAACATGTTTTGCTGTAC...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTCTGTTCAGCGATGGTTaGGAAGCTATAGAGTCTGAC +
Preference number: 5 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGLFSDG*EAIESD
Trigger: GTCAGACTCTATAGCTTCCAAACCATCGCTGAACAG...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp ACCAGTTATTCTTTTGAGGTTACATCGGATAAATGTGCAGAACATGCGAAATGGCAGCTGCTGGGGTGTTaGGCTAAAAGTCTCTTAGGT +
Preference number: 5 (lower is better)
Translates to: TSYSFEVTSDKCAEHAKWQLLGC*AKSLLG
Trigger: ACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG...CCATTTCGCATGTTCTGCACATTTATCCGATGTAACCTCAAAAGAATAACTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp ATGGATTGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATCCCAGCATTTTATATTaGCATTACCACCTAGCTCAA +
Preference number: 5 (lower is better)
Translates to: MDWTQLLGCLAKSLLGYNPSILY*HYHLAQ
Trigger: TTGAGCTAGGTGGTAATGCAAATATAAAATGCTGGG...ATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCAATCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAGCATTGCAGCTGCTTaGAAACTCACACAACATTGG +
Preference number: 5 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLSIAAA*KLTQHW
Trigger: CCAATGTTGTGTGAGTTTCAAAGCAGCTGCAATGCT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AAGCTACCCTGCTTCACCTGGGCTTGCATTAAACACTCAGAATTGTTACCCATAAACTTTGGAGGAAATTaGGCACAAGTTCATGCCGAA +
Preference number: 5 (lower is better)
Translates to: KLPCFTWACIKHSELLPINFGGN*AQVHAE
Trigger: TTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTT...TATGGGTAACAATTCTGAGTGTTTAATGCAAGCCCAGGTGAAGCAGGGTAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TGGACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCAACATGCCTTGCCTTTaGAGAACTTTGGAGGAAATT +
Preference number: 5 (lower is better)
Translates to: WTQLLGCLAKSLLGYNYLNMPCL*RTLEEI
Trigger: AATTTCCTCCAAAGTTCTCAAAAGGCAAGGCATGTT...GAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTAATTTTGAAAGTCTCTaGTTCTGGGTCATCATCCAG +
Preference number: 5 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTNFESL*FWVIIQ
Trigger: CTGGATGATGACCCAGAACAAGAGACTTTCAAAATT...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CAA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTTCCTTCAGCATCTATTaGAGTAACAGCTACCACAGA +
Preference number: 5 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSSFSIY*SNSYHR
Trigger: TCTGTGGTAGCTGTTACTCAAATAGATGCTGAAGGA...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TCCATGAGACAAGGTAGCATCTGTAACGTTCCCAAAAATCTTTTTGTTGATCTCAACTGCAATGACTTCTaGAGGAGTGTCCCAGCTCAA +
Preference number: 5 (lower is better)
Translates to: SMRQGSICNVPKNLFVDLNCNDF*RSVPAQ
Trigger: TTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTT...GAGATCAACAAAAAGATTTTTGGGAACGTTACAGATGCTACCTTGTCTCATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000436317.1
CDS-3UTR CAA 90 bp GATGCTCTGAGAATGCAGAAACTTAGATCCAGGAGTGCAATGCAGAATGCACCTCTCCCTTTACTTGGGTaGCCTTTATTTAACATTCTA +
Preference number: 5 (lower is better)
Translates to: DALRMQKLRSRSAMQNAPLPLLG*PLFNIL
Trigger: TAGAATGTTAAATAAAGGCAACCCAAGTAAAGGGAG...AGGTGCATTCTGCATTGCACTCCTGGATCTAAGTTTCTGCATTCTCAGAGCATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGCATTCCCACATACTGTaGCAACTGGCTGAAACTAAG +
Preference number: 5 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLHSHIL*QLAETK
Trigger: CTTAGTTTCAGCCAGTTGCAACAGTATGTGGGAATG...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTTTATGGTTCTCCCTGTaGGCCAAAATGACAAAATCT +
Preference number: 5 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSLWFSL*AKMTKS
Trigger: AGATTTTGTCATTTTGGCCAACAGGGAGAACCATAA...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000375255.8
CDS-3UTR CAA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTTTATGGTTCTCCCTGTaGGCCAAAATGACAAAATCT +
Preference number: 5 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLLWFSL*AKMTKS
Trigger: AGATTTTGTCATTTTGGCCAACAGGGAGAACCATAA...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000431110.1
CDS-3UTR CAA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAATTTTGAAAGTCTCTaGTTCTGGGTCATCATCCAG +
Preference number: 5 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLNFESL*FWVIIQ
Trigger: CTGGATGATGACCCAGAACAAGAGACTTTCAAAATT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000375255.8
ENST00000431110.1
ENST00000539783.5
CDS-3UTR CAA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTTCTGCATGTTTACTTTaGTCTCTCCCTGTCTTTCCT +
Preference number: 5 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGSACLL*SLPVFP
Trigger: AGGAAAGACAGGGAGAGACAAAAGTAAACATGCAGA...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp ACGCAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTAATTCCCCACATTCTTaGCTATCTTCTGTATCTTCT +
Preference number: 5 (lower is better)
Translates to: TQLLGCLAKSLLGYNYLTNSPHS*LSSVSS
Trigger: AGAAGATACAGAAGATAGCAAAGAATGTGGGGAATT...AGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTGCGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATGTTTCCCACCTCTAGGATAGGATTTGTTTaGTTTTCTCCCAGAGTTGTG +
Preference number: 5 (lower is better)
Translates to: RKFGTSSCRTNLVMFPTSRIGFV*FSPRVV
Trigger: CACAACTCTGGGAGAAAACAAAACAAATCCTATCCT...AGAGGTGGGAAACATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AAGAATGTGAAGTGCCTTAATTTGTCTAAACAGAGCGGTATCTCCTCACTAGGTTGCCTTTTGAGAACTTaGGAGGAAATTTGGCACAAG +
Preference number: 5 (lower is better)
Translates to: KNVKCLNLSKQSGISSLGCLLRT*EEIWHK
Trigger: CTTGTGCCAAATTTCCTCCAAAGTTCTCAAAAGGCA...ACCTAGTGAGGAGATACCGCTCTGTTTAGACAAATTAAGGCACTTCACATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAACATGCCTTGCCTTTaGAGAACTTTGGAGGAAATT +
Preference number: 5 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLNMPCL*RTLEEI
Trigger: AATTTCCTCCAAAGTTCTCAAAAGGCAAGGCATGTT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGCAGCTGAAGACTCTGTaGGGTTTCTGCTCTATGTGT +
Preference number: 5 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKQLKTL*GFCSMC
Trigger: ACACATAGAGCAGAAACCCAACAGAGTCTTCAGCTG...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGCCCAGCATTTTATATTaGCATTACCACCTAGCTCAA +
Preference number: 5 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLPSILY*HYHLAQ
Trigger: TTGAGCTAGGTGGTAATGCAAATATAAAATGCTGGG...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATAACTTTGGAGGAAATTaGGCACAAGTTCATGCCGAA +
Preference number: 5 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYNFGGN*AQVHAE
Trigger: TTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTT...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp CAGCTGCTGGGGTGTTTGGCTAAAAGTCTCTTAGGTTACAATTATCTCACTCTTAATTTTGGAAAGGGTTaGGGTTACACAGGTGTATAT +
Preference number: 5 (lower is better)
Translates to: QLLGCLAKSLLGYNYLTLNFGKG*GYTGVY
Trigger: ATATACACCTGTGTAACCCAAACCCTTTCCAAAATT...AAGAGTGAGATAATTGTAACCTAAGAGACTTTTAGCCAAACACCCCAGCAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TTGAGAACTTTGGAGGAAATTTGGCACAAGTTCATGCCGAACAAATCTGGTTATCTTGGATCCCATTTTTaGCCAGGGAATTGTCTTTTA +
Preference number: 5 (lower is better)
Translates to: LRTLEEIWHKFMPNKSGYLGSHF*PGNCLL
Trigger: TAAAAGACAATTCCCTGGCAAAAAATGGGATCCAAG...ATAACCAGATTTGTTCGGCATGAACTTGTGCCAAATTTCCTCCAAAGTTCTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000375255.8
CDS-3UTR CAA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGAATTCCCCACATTCTTaGCTATCTTCTGTATCTTCT +
Preference number: 5 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLNSPHS*LSSVSS
Trigger: AGAAGATACAGAAGATAGCAAAGAATGTGGGGAATT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp TTTGTTACACTGCCCACAACTCCTTACTGTCTTTCACATGAGGTATATTTCCTGAATTTTGGAAAGGGTTaGGGTTACACAGGTGTATAT +
Preference number: 5 (lower is better)
Translates to: FVTLPTTPYCLSHEVYFLNFGKG*GYTGVY
Trigger: ATATACACCTGTGTAACCCAAACCCTTTCCAAAATT...CAGGAAATATACCTCATGTGAAAGACAGTAAGGAGTTGTGGGCAGTGTAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS-3UTR CAA 90 bp AGAAACACAAATATTCAATGTGAACATCAAGCCAAGAGAACAAAACCAAGGAAGTCTGCATGTTTACTTTaGTCTCTCCCTGTCTTTCCT +
Preference number: 5 (lower is better)
Translates to: RNTNIQCEHQAKRTKPRKSACLL*SLPVFP
Trigger: AGGAAAGACAGGGAGAGACAAAAGTAAACATGCAGA...CTTCCTTGGTTTTGTTCTCTTGGCTTGATGTTCACATTGAATATTTGTGTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CAA 90 bp CGCGAGAAGCAGCCCAGCGCCCGGCGACTCAGCCGGCTGCACACGTaGGGCTTCCGGGTCGGGCCCATGGAGGCGCGGGCCGGGCCCTGG +
Preference number: 6 (lower is better)
Translates to: REKQPSARRLSRLHT*GFRVGPMEARAGPW
Trigger: CCAGGGCCCGGCCCGCGCCTCCATGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCTGAGTCGCCGGGCGCTGGGCTGCTTCTCGCG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CCA 72 bp AGCCCAGCGCCCGGCGACTCAGCCGGCTGCACACGTTaGGCTTCCGGGTCGGGCCCATGGAGGCGCGGGCCG +
Preference number: 6 (lower is better)
Translates to: SPAPGDSAGCTR*ASGSGPWRRGP
Trigger: CGGCCCGCGCCTCCATGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCTGAGTCGCCGGGCGCTGGGCT
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CAA 72 bp CAGCCCAGCGCCCGGCGACTCAGCCGGCTGCACACGTaGGGCTTCCGGGTCGGGCCCATGGAGGCGCGGGCC +
Preference number: 6 (lower is better)
Translates to: QPSARRLSRLHT*GFRVGPMEARA
Trigger: GGCCCGCGCCTCCATGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCTGAGTCGCCGGGCGCTGGGCTG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 72 bp AGGCTGGGCCGCCGAGTGGCGCGCCCCACACTCCCGTaGTGGGCAGCCGCCGCTGCCTTCGAATTTCGAGGC +
Preference number: 6 (lower is better)
Translates to: RLGRRVARPTLP*WAAAAAFEFRG
Trigger: GCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGGGCGCGCCACTCGGCGGCCCAGCCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 72 bp GCGAGAAGCAGCCCAGCGCCCGGCGACTCAGCCGGCTaGACACGTTGGGCTTCCGGGTCGGGCCCATGGAGG +
Preference number: 6 (lower is better)
Translates to: ARSSPAPGDSAG*TRWASGSGPWR
Trigger: CCTCCATGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCTGAGTCGCCGGGCGCTGGGCTGCTTCTCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CCA 72 bp CTGGGCCGCCGAGTGGCGCGCCCCACACTCCCGTGCTaGGCAGCCGCCGCTGCCTTCGAATTTCGAGGCCCA +
Preference number: 6 (lower is better)
Translates to: LGRRVARPTLPC*AAAAAFEFRGP
Trigger: TGGGCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGGGCGCGCCACTCGGCGGCCCAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 72 bp GGCGCGCCCCACACTCCCGTGCTGGGCAGCCGCCGCTaGCTTCGAATTTCGAGGCCCAGACTTTCCCGGCGG +
Preference number: 6 (lower is better)
Translates to: GAPHTPVLGSRR*LRISRPRLSRR
Trigger: CCGCCGGGAAAGTCTGGGCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGGGCGCGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 72 bp CCGCAGGATGCCCAGGTTGGTCCTCTGCACCACGCCTaGGTCGCGCGAGAAGCAGCCCAGCGCCCGGCGACT +
Preference number: 6 (lower is better)
Translates to: PQDAQVGPLHHA*VAREAAQRPAT
Trigger: AGTCGCCGGGCGCTGGGCTGCTTCTCGCGCGACGCAGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGCGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS TCA 72 bp ACTCCCTTTTCGATCTGCCCCAGGCTCTCTGGCCGCTaGCAGTGCGACGCTCCGGTACCGCGCGGCCGGCCG +
Preference number: 6 (lower is better)
Translates to: TPFSICPRLSGR*QCDAPVPRGRP
Trigger: CGGCCGGCCGCGCGGTACCGGAGCGTCGCACTGTCAGCGGCCAGAGAGCCTGGGGCAGATCGAAAAGGGAGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS GCA 72 bp GCACCCGACGGCGGGGCGAGGGAAAGCAGAGCCGCTTaGACCGCCAGAGCGCGGAGAGAAGGGAAGAAGCAC +
Preference number: 6 (lower is better)
Translates to: APDGGARESRAA*TARARREGKKH
Trigger: GTGCTTCTTCCCTTCTCTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTCCCTCGCCCCGCCGTCGGGTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CAA 90 bp CGGGCAGGGAGCACCCGACGGCGGGGCGAGGGAAAGCAGAGCCGCTaGCACCGCCAGAGCGCGGAGAGAAGGGAAGAAGCACTCCCTTTT +
Preference number: 6 (lower is better)
Translates to: RAGSTRRRGEGKQSR*HRQSAERREEALPF
Trigger: AAAAGGGAGTGCTTCTTCCCTTCTCTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTCCCTCGCCCCGCCGTCGGGTGCTCCCTGCCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CAA 72 bp AGCACCCGACGGCGGGGCGAGGGAAAGCAGAGCCGCTaGCACCGCCAGAGCGCGGAGAGAAGGGAAGAAGCA +
Preference number: 6 (lower is better)
Translates to: STRRRGEGKQSR*HRQSAERREEA
Trigger: TGCTTCTTCCCTTCTCTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTCCCTCGCCCCGCCGTCGGGTGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CAA 72 bp CTTTCCTGGCACACCAGCGCCCGCAGGATGCCCAGGTaGGTCCTCTGCACCACGCCTGCGTCGCGCGAGAAG +
Preference number: 6 (lower is better)
Translates to: LSWHTSARRMPR*VLCTTPASREK
Trigger: CTTCTCGCGCGACGCAGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAGGAAAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CCA 72 bp AAGAAGCACTCCCTTTTCGATCTGCCCCAGGCTCTCTaGCCGCTGACAGTGCGACGCTCCGGTACCGCGCGG +
Preference number: 6 (lower is better)
Translates to: KKHSLFDLPQAL*PLTVRRSGTAR
Trigger: CCGCGCGGTACCGGAGCGTCGCACTGTCAGCGGCCAGAGAGCCTGGGGCAGATCGAAAAGGGAGTGCTTCTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS CAA 90 bp AATTTAGTACTTTCCTGGCACACCAGCGCCCGCAGGATGCCCAGGTaGGTCCTCTGCACCACGCCTGCGTCGCGCGAGAAGCAGCCCAGC +
Preference number: 6 (lower is better)
Translates to: NLVLSWHTSARRMPR*VLCTTPASREKQPS
Trigger: GCTGGGCTGCTTCTCGCGCGACGCAGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAGGAAAGTACTAAATT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000375255.8
ENST00000539783.5
CDS TCA 72 bp GAGTATTCAACTGCTGCCTCTCACAAGTGTGTTTGCTaGTTCCTGGACAGGACTAAACACATGAAGCTCGGT +
Preference number: 6 (lower is better)
Translates to: EYSTAASHKCVC*FLDRTKHMKLG
Trigger: ACCGAGCTTCATGTGTTTAGTCCTGTCCAGGAATCAGCAAACACACTTGTGAGAGGCAGCAGTTGAATACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000498486.1
CDS CCA 72 bp GTAAGACATAAGAAGCGTAAAACTAAAAGCAGCTGGTaGCCCTATTACCACCTATCCCAGATTCCGGGCTTG +
Preference number: 6 (lower is better)
Translates to: VRHKKRKTKSSW*PYYHLSQIPGL
Trigger: CAAGCCCGGAATCTGGGATAGGTGGTAATAGGGCCACCAGCTGCTTTTAGTTTTACGCTTCTTATGTCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490217.5
CDS TCA 72 bp CCCCAGTGTCACATATCATCTGGTAAACATAGCAGCTaGAGACTCTGTTGGGTTTCTGCTCTATGTGTAGCA +
Preference number: 6 (lower is better)
Translates to: PQCHISSGKHSS*RLCWVSALCVA
Trigger: TGCTACACATAGAGCAGAAACCCAACAGAGTCTTCAGCTGCTATGTTTACCAGATGATATGTGACACTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000339506.7
ENST00000375255.8
ENST00000431110.1
ENST00000468592.5
ENST00000498486.1
ENST00000539783.5
ENST00000611110.4
CDS TCA 72 bp ATGTCTGTTCAGCGATGGTTTGGAAGCTATAGAGTCTaGCCAGTCCTGAGCTGTACATCACAATCAGTATTC +
Preference number: 6 (lower is better)
Translates to: MSVQRWFGSYRV*PVLSCTSQSVF
Trigger: GAATACTGATTGTGATGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCCAAACCATCGCTGAACAGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000468592.5
ENST00000611110.4
CDS CAA 72 bp CTAGAGAACAACAATCCATTTCTTGGATCCCATTTTTaGCCTTATATCCAGAAGCACTGGGAACGAACATCA +
Preference number: 6 (lower is better)
Translates to: LENNNPFLGSHF*PYIQKHWERTS
Trigger: TGATGTTCGTTCCCAGTGCTTCTGGATATAAGGCAAAAAATGGGATCCAAGAAATGGATTGTTGTTCTCTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000431110.1
CDS CAA 90 bp AGTCAGATTCTAGAGAACAACAATCCATTTCTTGGATCCCATTTTTaGCCTTATATCCAGAAGCACTGGGAACGAACATCAACTTGGATA +
Preference number: 6 (lower is better)
Translates to: SQILENNNPFLGSHF*PYIQKHWERTSTWI
Trigger: TATCCAAGTTGATGTTCGTTCCCAGTGCTTCTGGATATAAGGCAAAAAATGGGATCCAAGAAATGGATTGTTGTTCTCTAGAATCTGACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000431110.1
CDS TCA 72 bp CAAAGAATAAATTCAGGTGTTCTGTATGCCAGTCTCTaGGGAAGCACCCAACAACAAGCTAATTATTTCCAT +
Preference number: 6 (lower is better)
Translates to: QRINSGVLYASL*GSTQQQANYFH
Trigger: ATGGAAATAATTAGCTTGTTGTTGGGTGCTTCCTCAGAGACTGGCATACAGAACACCTGAATTTATTCTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000493106.1
CDS TCA 72 bp GTCAAAATATATTCTTCCTCTCTCATAGGCTATAGGTaGCCTGGAATGAGTTGTCCAGACATTCTTAAATTT +
Preference number: 6 (lower is better)
Translates to: VKIYSSSLIGYR*PGMSCPDILKF
Trigger: AAATTTAAGAATGTCTGGACAACTCATTCCAGGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000375255.8
ENST00000436317.1
ENST00000468592.5
ENST00000490217.5
ENST00000539783.5
CDS CAA 72 bp CTGATGAGAAAGGGCCAGTCTGTAATTCCCTTTTACTaGCATATCATCCATCAAATAACGTTTTCAAATTTA +
Preference number: 6 (lower is better)
Translates to: LMRKGQSVIPFY*HIIHQITFSNL
Trigger: TAAATTTGAAAACGTTATTTGATGGATGATATGCAAGTAAAAGGGAATTACAGACTGGCCCTTTCTCATCAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000493106.1