RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DAW1 (Homo sapiens)

Ensembl gene IDs: ENSG00000123977

Ensembl transcript IDs: ENST00000309931.3, ENST00000373666.6, ENST00000440997.1, ENST00000454999.5, ENST00000472604.1

Found 174 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTTCATCAGTGTGCCCCTCAAGAACCTGGAGGCACTGGCCAGTCTaGGCATCCCAGATTCTAGCCGTTTTGTCAGAGCTGCCAGTTAGA +
Preference number: 1 (lower is better)
Translates to: ISSVCPSRTWRHWPV*ASQILAVLSELPVR
Trigger: TCTAACTGGCAGCTCTGACAAAACGGCTAGAATCTGGGATGCTCAGACTGGCCAGTGCCTCCAGGTTCTTGAGGGGCACACTGATGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR CCA 90 bp TTGACTTGCTCTGTTCGTGAAGCTGTGAGTAGAGGTTCTGCCTTCTaGATTTCTTCTACTAACGCACTGACATCAGTGCTGGGACCAAGA +
Preference number: 1 (lower is better)
Translates to: LTCSVREAVSRGSAF*ISSTNALTSVLGPR
Trigger: TCTTGGTCCCAGCACTGATGTCAGTGCGTTAGTAGAAGAAATCCAGAAGGCAGAACCTCTACTCACAGCTTCACGAACAGAGCAAGTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR TCA 90 bp GTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTCACTaGCCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTATCC +
Preference number: 1 (lower is better)
Translates to: VKFQFLITIASKVAH*PASFSQRHILQVLS
Trigger: GGATAATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR GCA 90 bp TTCTGGCCGAGTTTCTCTTGCAACCTCTGTATCAAAAGTTTGACTTaGTCTGTTCGTGAAGCTGTGAGTAGAGGTTCTGCCTTCTGGATT +
Preference number: 1 (lower is better)
Translates to: FWPSFSCNLCIKSLT*SVREAVSRGSAFWI
Trigger: AATCCAGAAGGCAGAACCTCTACTCACAGCTTCACGAACAGAGCAAGTCAAACTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR GCA 90 bp AAAACAAACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATaGTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCA +
Preference number: 1 (lower is better)
Translates to: KTNTTEITGGISQTL*CVLPSPSNNNIGVA
Trigger: TGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTTTGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
3UTR-3UTR TCA 90 bp TCAGCTCCTCTCCAGACGCAGTGTCCCAGAGCTTGCACGTCCGATCATAGCTTCCTGTTCGTGAAGCTGTaGGTAGAGGTTCTGCCTTCT +
Preference number: 2 (lower is better)
Translates to: SAPLQTQCPRACTSDHSFLFVKL*VEVLPS
Trigger: AGAAGGCAGAACCTCTACTCACAGCTTCACGAACAG...GAAGCTATGATCGGACGTGCAAGCTCTGGGACACTGCGTCTGGAGAGGAGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR-3UTR TCA 90 bp CTATGGCATAAACCACATTCCTGTGGCCCTCCAGCGTGTTCAGCTCCTCTCCAGTCTGTATCAAAAGTTTaGCTTGCTCTGTTCGTGAAG +
Preference number: 2 (lower is better)
Translates to: LWHKPHSCGPPACSAPLQSVSKV*LALFVK
Trigger: CTTCACGAACAGAGCAAGTCAAACTTTTGATACAGA...CTGGAGAGGAGCTGAACACGCTGGAGGGCCACAGGAATGTGGTTTATGCCATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR CAA 90 bp TTGCTGTTCTGGCCGAGTTTCTCTTGCAACCTCTGTATCAAAAGTTaGACTTGCTCTGTTCGTGAAGCTGTGAGTAGAGGTTCTGCCTTC +
Preference number: 2 (lower is better)
Translates to: LLFWPSFSCNLCIKS*TCSVREAVSRGSAF
Trigger: GAAGGCAGAACCTCTACTCACAGCTTCACGAACAGAGCAAGTCAAACTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAGAACAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR-3UTR GCA 90 bp CAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTATTAGCCAAACATTATaGTGTGTCCTGCCATCGCCA +
Preference number: 2 (lower is better)
Translates to: QGCSLTSFLQSTPYPTGIISQTL*CVLPSP
Trigger: TGGCGATGGCAGGACACAGCATAATGTTTGGCTAAT...AATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR-3UTR TCA 90 bp TGTTTCCACACTCCAGAGTTTACAAGTTTTATCAAAGGACCCAGTGGCGATTTTCTTCTACTAACGCACTaGCATCAGTGCTGGGACCAA +
Preference number: 2 (lower is better)
Translates to: CFHTPEFTSFIKGPSGDFLLLTH*HQCWDQ
Trigger: TTGGTCCCAGCACTGATGTCAGTGCGTTAGTAGAAG...AAAATCGCCACTGGGTCCTTTGATAAAACTTGTAAACTCTGGAGTGTGGAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR-3UTR GCA 90 bp ACCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTATCCTTGCTGCCTGTCATTATGCTGTGTCCTaGCATCGCCATCAAATAATA +
Preference number: 2 (lower is better)
Translates to: TSFLQSTPYPTGIILAACHYAVS*HRHQII
Trigger: TATTATTTGATGGCGATGGCAGGACACAGCATAATG...ACAGGCAGCAAGGATAATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR-3UTR GCA 90 bp AGTGGCGATTTTGTCACCGTAAGGATTGTTGAATGCTATGGCATAAACCACATTGATAGAACGTGTGATTaGTGTTCTGGCCGAGTTTCT +
Preference number: 2 (lower is better)
Translates to: SGDFVTVRIVECYGINHIDRTCD*CSGRVS
Trigger: AGAAACTCGGCCAGAACAGCAATCACACGTTCTATC...AATGTGGTTTATGCCATAGCATTCAACAATCCTTACGGTGACAAAATCGCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR-3UTR GCA 90 bp TGTTTCCACACTCCAGAGTTTACAAGTTTTATCAAAGGACCCAGTGGCGATTTTGCCCGATTTGTTAAGTaGAACATTAGTCAGTGGCAA +
Preference number: 2 (lower is better)
Translates to: CFHTPEFTSFIKGPSGDFARFVK*NISQWQ
Trigger: TTGCCACTGACTAATGTTGCACTTAACAAATCGGGC...AAAATCGCCACTGGGTCCTTTGATAAAACTTGTAAACTCTGGAGTGTGGAAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR-3UTR TCA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAATTGTTGACAGCAGATaGCACAGGCATAGTTTAGCA +
Preference number: 2 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSIVDSR*HRHSLA
Trigger: TGCTAAACTATGCCTGTGTCATCTGCTGTCAACAAT...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR-3UTR GCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCACATTATGCTGTGTCCTaGCATCGCCATCAAATAATA +
Preference number: 2 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSHYAVS*HRHQII
Trigger: TATTATTTGATGGCGATGGCAGGACACAGCATAATG...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
3UTR CAA 90 bp GCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATaGGAGTGGCATAACTTTGTCATGTTTAATGGTCATATCTGTGAA +
Preference number: 2 (lower is better)
Translates to: AKHYAVSCHRHQIII*EWHNFVMFNGHICE
Trigger: TTCACAGATATGACCATTAAACATGACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
3UTR-3UTR GCA 90 bp CAATATATGTGCTTTGAGAACCTTAAAAAGATAGAACGTGTGATTGCTGTTCTGATCAAAAGTTTGACTTaGTCTGTTCGTGAAGCTGTG +
Preference number: 2 (lower is better)
Translates to: QYMCFENLKKIERVIAVLIKSLT*SVREAV
Trigger: CACAGCTTCACGAACAGAGCAAGTCAAACTTTTGAT...CAGAACAGCAATCACACGTTCTATCTTTTTAAGGTTCTCAAAGCACATATATTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR TCA 72 bp GTGTGCCCCTCAAGAACCTGGAGGCACTGGCCAGTCTaGGCATCCCAGATTCTAGCCGTTTTGTCAGAGCTG +
Preference number: 3 (lower is better)
Translates to: VCPSRTWRHWPV*ASQILAVLSEL
Trigger: CAGCTCTGACAAAACGGCTAGAATCTGGGATGCTCAGACTGGCCAGTGCCTCCAGGTTCTTGAGGGGCACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR-3UTR CAA 90 bp TCAGCTCCTCTCCAGACGCAGTGTCCCAGAGCTTGCACGTCCGATCATAGCTTCCTGGCCGAGTTTCTCTaGCAACCTCTGTATCAAAAG +
Preference number: 3 (lower is better)
Translates to: SAPLQTQCPRACTSDHSFLAEFL*QPLYQK
Trigger: CTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAG...GAAGCTATGATCGGACGTGCAAGCTCTGGGACACTGCGTCTGGAGAGGAGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR-3UTR CAA 90 bp ACCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTATCCTTGCTGCCTGTCCATTGCTAGCAAGGTaGCTCACTGACCAGCTTCCT +
Preference number: 3 (lower is better)
Translates to: TSFLQSTPYPTGIILAACPLLAR*LTDQLP
Trigger: AGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGG...ACAGGCAGCAAGGATAATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR GCA 72 bp CCCAGTGGCGATTTTGTCACCGTAAGGATTGTTGAATaGTATGGCATAAACCACATTCCTGTGGCCCTCCAG +
Preference number: 3 (lower is better)
Translates to: PSGDFVTVRIVE*YGINHIPVALQ
Trigger: CTGGAGGGCCACAGGAATGTGGTTTATGCCATAGCATTCAACAATCCTTACGGTGACAAAATCGCCACTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
3UTR-3UTR CAA 90 bp TTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACTGCTGTTCCATATTGTaGACAGCAGATGACACAGGC +
Preference number: 3 (lower is better)
Translates to: LLARLLTDQLPSVNAISYCCSIL*TADDTG
Trigger: GCCTGTGTCATCTGCTGTCAACAATATGGAACAGCA...GTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR-3UTR CAA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATCCATTGCTAGCAAGGTaGCTCACTGACCAGCTTCCT +
Preference number: 3 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNPLLAR*LTDQLP
Trigger: AGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGG...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
3UTR-3UTR CAA 90 bp TTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACGTGAAGTTCCAGTTCTaGATTACCATTGCTAGCAAG +
Preference number: 3 (lower is better)
Translates to: LLARLLTDQLPSVNAISYVKFQF*ITIASK
Trigger: CTTGCTAGCAATGGTAATCAAGAACTGGAACTTCAC...GTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR TCA 72 bp CAGTTCTTGATTACCATTGCTAGCAAGGTTGCTCACTaGCCAGCTTCCTTCAGTCAACGCCATATCCTACAG +
Preference number: 3 (lower is better)
Translates to: QFLITIASKVAH*PASFSQRHILQ
Trigger: CTGTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGGTAATCAAGAACTG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR-3UTR CAA 90 bp GCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCATAACTTTGTCGTGAAGTTCCAGTTCTaGATTACCATTGCTAGCAAG +
Preference number: 3 (lower is better)
Translates to: AVSCHRHQIIILEWHNFVVKFQF*ITIASK
Trigger: CTTGCTAGCAATGGTAATCAAGAACTGGAACTTCAC...GACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
3UTR-3UTR CAA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCTTGCTGTTCCATATaGTTGACAGCAGATGACACA +
Preference number: 3 (lower is better)
Translates to: NTTEITGGISQTLCCVLPSCCSI*LTADDT
Trigger: TGTGTCATCTGCTGTCAACAATATGGAACAGCAAGA...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR TCA 72 bp CTTCCAGTTTGGCAATGCATTTTCTTGTGGCAGCACTaGAAATTCTTGCTGTTCCATATTGTTGACAGCAGA +
Preference number: 3 (lower is better)
Translates to: LPVWQCIFLWQH*KFLLFHIVDSR
Trigger: TCTGCTGTCAACAATATGGAACAGCAAGAATTTTCAGTGCTGCCACAAGAAAATGCATTGCCAAACTGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR TCA 72 bp GTTTTGTCAGAGCTGCCAGTTAGAAGATGGTTCCCTTaGGGGTTGAAAGAAATCTTTGAAATTTCACCTTCA +
Preference number: 3 (lower is better)
Translates to: VLSELPVRRWFP*GLKEIFEISPS
Trigger: TGAAGGTGAAATTTCAAAGATTTCTTTCAACCCTCAAGGGAACCATCTTCTAACTGGCAGCTCTGACAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR GCA 72 bp ACAACTGAAATAACTGGTGGCATTAGCCAAACATTATaGTGTGTCCTGCCATCGCCATCAAATAATAATATT +
Preference number: 3 (lower is better)
Translates to: TTEITGGISQTL*CVLPSPSNNNI
Trigger: AATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATTGCACCGCGCGGTCCTaGGGCGCAGAGCTGGGAGGT +
Preference number: 4 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNCTARS*GAELGG
Trigger: ACCTCCCAGCTCTGCGCCCCAGGACCGCGCGGTGCA...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCAGCAGCGGGACGCGGGTaGGCATGCGCAGGTTGCACC +
Preference number: 4 (lower is better)
Translates to: NTTEITGGISQTLCCVLPAAGRG*ACAGCT
Trigger: GGTGCAACCTGCGCATGCGCACCCGCGTCCCGCTGC...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp CTGTGGCCCTCCAGCGTGTTCAGCTCCTCTCCAGACGCAGTGTCCCAGAGCTTGTCTGTATCAAAAGTTTaGCTTGCTCTGTTCGTGAAG +
Preference number: 4 (lower is better)
Translates to: LWPSSVFSSSPDAVSQSLSVSKV*LALFVK
Trigger: CTTCACGAACAGAGCAAGTCAAACTTTTGATACAGA...CAAGCTCTGGGACACTGCGTCTGGAGAGGAGCTGAACACGCTGGAGGGCCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR GCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCAGGACGCGGGTGCGCATaGGCAGGTTGCACCGCGCGG +
Preference number: 4 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSGRGCA*AGCTAR
Trigger: CCGCGCGGTGCAACCTGCGCATGCGCACCCGCGTCC...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTCTGGGAGGCGCAGGTTaGAGTGAGCCAAGATCGTGC +
Preference number: 4 (lower is better)
Translates to: ELLSVKFQFLITIASKVALGGAG*SEPRSC
Trigger: GCACGATCTTGGCTCACTGCAACCTGCGCCTCCCAG...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CCA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCACCTGGGGCGCAGAGCTaGGAGGTCTGGCTCCGCGGG +
Preference number: 4 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSPGAQS*EVWLRG
Trigger: CCCGCGGAGCCAGACCTCCCAGCTCTGCGCCCCAGG...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCATGCGCATGCGCAGGTTaGACCGCGCGGTCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSCACAG*TARSWG
Trigger: GCCCCAGGACCGCGCGGTGCAACCTGCGCATGCGCA...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCACAGAGCTGGGAGGTCTaGCTCCGCGGGCGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSQSWEV*LRGRLV
Trigger: CACCAACCGCCCGCGGAGCCAGACCTCCCAGCTCTG...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp TTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACGGAGCAGGAGGCTCTTaGGCTTCATTTTCTTGCTCT +
Preference number: 4 (lower is better)
Translates to: LLARLLTDQLPSVNAISYGAGGS*ASFSCS
Trigger: AGAGCAAGAAAATGAAGCTCAAGAGCCTCCTGCTCC...GTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp TTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACCTTCTACTAACGCACTaGCATCAGTGCTGGGACCAA +
Preference number: 4 (lower is better)
Translates to: LLARLLTDQLPSVNAISYLLLTH*HQCWDQ
Trigger: TTGGTCCCAGCACTGATGTCAGTGCGTTAGTAGAAG...GTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp AGGCATAGTTTAGCATCACGTCCAGTGATCAAAGAGATGAACACACCGGATAACAGGCACTGGCCAGTCTaGGCATCCCAGATTCTAGCC +
Preference number: 4 (lower is better)
Translates to: RHSLASRPVIKEMNTPDNRHWPV*ASQILA
Trigger: GGCTAGAATCTGGGATGCTCAGACTGGCCAGTGCCT...GTTATCCGGTGTGTTCATCTCTTTGATCACTGGACGTGATGCTAAACTATGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp GCACTGGCCAGTCTGAGCATCCCAGATTCTAGCCGTTTTGTCAGAGCTGCCAGTGCCCGATTTGTTAAGTaGAACATTAGTCAGTGGCAA +
Preference number: 4 (lower is better)
Translates to: ALASLSIPDSSRFVRAASARFVK*NISQWQ
Trigger: TTGCCACTGACTAATGTTGCACTTAACAAATCGGGC...ACTGGCAGCTCTGACAAAACGGCTAGAATCTGGGATGCTCAGACTGGCCAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp TTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACACTTCCTCGCCATTCTaGATGTCCCACAATTTGGCT +
Preference number: 4 (lower is better)
Translates to: LLARLLTDQLPSVNAISYTSSPF*MSHNLA
Trigger: AGCCAAATTGTGGGACATTCAGAATGGCGAGGAAGT...GTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCAAGGCACTGGCCAGTCTaGGCATCCCAGATTCTAGCC +
Preference number: 4 (lower is better)
Translates to: NTTEITGGISQTLCCVLPRHWPV*ASQILA
Trigger: GGCTAGAATCTGGGATGCTCAGACTGGCCAGTGCCT...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp ACCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTATCCTTGCTGCCTGTAGCAAGGTTGCTCACTaGCCAGCTTCCTTCAGTCAA +
Preference number: 4 (lower is better)
Translates to: TSFLQSTPYPTGIILAACSKVAH*PASFSQ
Trigger: TTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCT...ACAGGCAGCAAGGATAATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTCAGTGTCCCAGAGCTTaGACGTCCGATCATAGCTTC +
Preference number: 4 (lower is better)
Translates to: ELLSVKFQFLITIASKVAQCPRA*TSDHSF
Trigger: GAAGCTATGATCGGACGTGCAAGCTCTGGGACACTG...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp TTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACAAGATTTCATCAGTGTaGCCCTCAAGAACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LLARLLTDQLPSVNAISYKISSV*PSRTWR
Trigger: CCTCCAGGTTCTTGAGGGGCACACTGATGAAATCTT...GTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CCA 90 bp CCTGTTTCCACACTCCAGAGTTTACAAGTTTTATCAAAGGACCCAGTGGCGATTTGGCTCACCAAAGACTaGCGGGTAATACCGGAGCAG +
Preference number: 4 (lower is better)
Translates to: PVSTLQSLQVLSKDPVAIWLTKD*RVIPEQ
Trigger: CTGCTCCGGTATTACCCGCCAGTCTTTGGTGAGCCA...AATCGCCACTGGGTCCTTTGATAAAACTTGTAAACTCTGGAGTGTGGAAACAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR GCA 90 bp CCTGTTTCCACACTCCAGAGTTTACAAGTTTTATCAAAGGACCCAGTGGCGATTCAGTGTCCCAGAGCTTaGACGTCCGATCATAGCTTC +
Preference number: 4 (lower is better)
Translates to: PVSTLQSLQVLSKDPVAIQCPRA*TSDHSF
Trigger: GAAGCTATGATCGGACGTGCAAGCTCTGGGACACTG...AATCGCCACTGGGTCCTTTGATAAAACTTGTAAACTCTGGAGTGTGGAAACAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR CCA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCAATGGATAGGCGGGAATaGAAGGCAGGTGCGTCGGAA +
Preference number: 4 (lower is better)
Translates to: NTTEITGGISQTLCCVLPMDRRE*KAGASE
Trigger: TTCCGACGCACCTGCCTTCCATTCCCGCCTATCCAT...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp CGTGTGATTGCTGTTCTGGCCGAGTTTCTCTTGCAACCTCTGTATCAAAAGTTTGGAGCAGGAGGCTCTTaGGCTTCATTTTCTTGCTCT +
Preference number: 4 (lower is better)
Translates to: RVIAVLAEFLLQPLYQKFGAGGS*ASFSCS
Trigger: AGAGCAAGAAAATGAAGCTCAAGAGCCTCCTGCTCC...AAACTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAGAACAGCAATCACACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR TCA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATCTGTTCGTGAAGCTGTaGGTAGAGGTTCTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNLFVKL*VEVLPS
Trigger: AGAAGGCAGAACCTCTACTCACAGCTTCACGAACAG...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp CGTGTGATTGCTGTTCTGGCCGAGTTTCTCTTGCAACCTCTGTATCAAAAGTTTCTGTTCGTGAAGCTGTaGGTAGAGGTTCTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: RVIAVLAEFLLQPLYQKFLFVKL*VEVLPS
Trigger: AGAAGGCAGAACCTCTACTCACAGCTTCACGAACAG...AAACTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAGAACAGCAATCACACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR TCA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTCACACTACAACGGTATaGTCAAAAGACCCCGTGATG +
Preference number: 4 (lower is better)
Translates to: ELLSVKFQFLITIASKVAHTTTV*SKDPVM
Trigger: CATCACGGGGTCTTTTGATCATACCGTTGTAGTGTG...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTGCAATCCCAATTGAATaGGGCACTGCTAATCTCAGC +
Preference number: 4 (lower is better)
Translates to: ELLSVKFQFLITIASKVAAIPIE*GTANLS
Trigger: GCTGAGATTAGCAGTGCCTCATTCAATTGGGATTGC...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp CTATGGCATAAACCACATTCCTGTGGCCCTCCAGCGTGTTCAGCTCCTCTCCAGGTAAGGATTGTTGAATaGTATGGCATAAACCACATT +
Preference number: 4 (lower is better)
Translates to: LWHKPHSCGPPACSAPLQVRIVE*YGINHI
Trigger: AATGTGGTTTATGCCATAGCATTCAACAATCCTTAC...CTGGAGAGGAGCTGAACACGCTGGAGGGCCACAGGAATGTGGTTTATGCCATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR GCA 90 bp ACCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTATCCTTGCTGCCTGTATTAGCCAAACATTATaGTGTGTCCTGCCATCGCCA +
Preference number: 4 (lower is better)
Translates to: TSFLQSTPYPTGIILAACISQTL*CVLPSP
Trigger: TGGCGATGGCAGGACACAGCATAATGTTTGGCTAAT...ACAGGCAGCAAGGATAATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CCA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTTTCCAACATAATTCCTaGCGGGTAATACCGGAGCAG +
Preference number: 4 (lower is better)
Translates to: ELLSVKFQFLITIASKVAFQHNS*RVIPEQ
Trigger: CTGCTCCGGTATTACCCGCCAGGAATTATGTTGGAA...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp GCACTGGCCAGTCTGAGCATCCCAGATTCTAGCCGTTTTGTCAGAGCTGCCAGTGTTGTTAAGTTGTTCTaGTCTCCTTTTTCAGTATCA +
Preference number: 4 (lower is better)
Translates to: ALASLSIPDSSRFVRAASVVKLF*SPFSVS
Trigger: TGATACTGAAAAAGGAGACCAGAACAACTTAACAAC...ACTGGCAGCTCTGACAAAACGGCTAGAATCTGGGATGCTCAGACTGGCCAGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCAGGAGCAGGAGGCTCTTaGGCTTCATTTTCTTGCTCT +
Preference number: 4 (lower is better)
Translates to: NTTEITGGISQTLCCVLPGAGGS*ASFSCS
Trigger: AGAGCAAGAAAATGAAGCTCAAGAGCCTCCTGCTCC...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp CAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTAGAGGTTCTGCCTTCTaGATTTCTTCTACTAACGCA +
Preference number: 4 (lower is better)
Translates to: QGCSLTSFLQSTPYPTGIRGSAF*ISSTNA
Trigger: TGCGTTAGTAGAAGAAATCCAGAAGGCAGAACCTCT...AATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CCA 90 bp TTACCATTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATAGAATGTCCCACAATTTaGCTGTTGTGTCCATACTTC +
Preference number: 4 (lower is better)
Translates to: LPLLARLLTDQLPSVNAIECPTI*LLCPYF
Trigger: GAAGTATGGACACAACAGCCAAATTGTGGGACATTC...TATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
3UTR CAA 72 bp TGGCCGAGTTTCTCTTGCAACCTCTGTATCAAAAGTTaGACTTGCTCTGTTCGTGAAGCTGTGAGTAGAGGT +
Preference number: 4 (lower is better)
Translates to: WPSFSCNLCIKS*TCSVREAVSRG
Trigger: ACCTCTACTCACAGCTTCACGAACAGAGCAAGTCAAACTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR TCA 90 bp AGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGCTTCTACTAACGCACTaGCATCAGTGCTGGGACCAA +
Preference number: 4 (lower is better)
Translates to: SQTLCCVLPSPSNNNIGVLLLTH*HQCWDQ
Trigger: TTGGTCCCAGCACTGATGTCAGTGCGTTAGTAGAAG...CACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATCTGCTGTATGACCCCTaGAGGTATGGTAACATTTTC +
Preference number: 4 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNLLYDP*RYGNIF
Trigger: GAAAATGTTACCATACCTTCAGGGGTCATACAGCAG...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp ATCAAAAGTTTGACTTGCTCTGTTCGTGAAGCTGTGAGTAGAGGTTCTGCCTTCCTGCTGTATGACCCCTaGAGGTATGGTAACATTTTC +
Preference number: 4 (lower is better)
Translates to: IKSLTCSVREAVSRGSAFLLYDP*RYGNIF
Trigger: GAAAATGTTACCATACCTTCAGGGGTCATACAGCAG...GAAGGCAGAACCTCTACTCACAGCTTCACGAACAGAGCAAGTCAAACTTTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR TCA 90 bp CAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTAGAAGATGGTTCCCTTaGGGGTTGAAAGAAATCTTT +
Preference number: 4 (lower is better)
Translates to: QGCSLTSFLQSTPYPTGIRRWFP*GLKEIF
Trigger: AAAGATTTCTTTCAACCCTCAAGGGAACCATCTTCT...AATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTATATTTTGCATTTCCTaGCTCTGTGCCCTACATTGC +
Preference number: 4 (lower is better)
Translates to: ELLSVKFQFLITIASKVAIFCIS*LCALHC
Trigger: GCAATGTAGGGCACAGAGTCAGGAAATGCAAAATAT...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATGACTCCATCATCAGCTaGAGCAGTTGCAATAAGCTT +
Preference number: 4 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNDSIIS*SSCNKL
Trigger: AAGCTTATTGCAACTGCTTCAGCTGATGATGGAGTC...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp GCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCATAACTTTGTCAAGATTTCATCAGTGTaGCCCTCAAGAACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: AVSCHRHQIIILEWHNFVKISSV*PSRTWR
Trigger: CCTCCAGGTTCTTGAGGGGCACACTGATGAAATCTT...GACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATATTAGCCAAACATTATaGTGTGTCCTGCCATCGCCA +
Preference number: 4 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNISQTL*CVLPSP
Trigger: TGGCGATGGCAGGACACAGCATAATGTTTGGCTAAT...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp TTGGCAATGCATTTTCTTGTGGCAGCACTGAAAATTCTTGCTGTTCCATATTGTTCCCAAAAGGAAGGCTaGGAGGAAAAGCCCATCGCT +
Preference number: 4 (lower is better)
Translates to: LAMHFLVAALKILAVPYCSQKEG*EEKPIA
Trigger: AGCGATGGGCTTTTCCTCCCAGCCTTCCTTTTGGGA...ACAATATGGAACAGCAAGAATTTTCAGTGCTGCCACAAGAAAATGCATTGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CCA 90 bp ATCAAAAGTTTGACTTGCTCTGTTCGTGAAGCTGTGAGTAGAGGTTCTGCCTTCAACTTGCATATGATTTaGCTCACCAAAGACTGGCGG +
Preference number: 4 (lower is better)
Translates to: IKSLTCSVREAVSRGSAFNLHMI*LTKDWR
Trigger: CCGCCAGTCTTTGGTGAGCCAAATCATATGCAAGTT...GAAGGCAGAACCTCTACTCACAGCTTCACGAACAGAGCAAGTCAAACTTTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR TCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCACTGTTCGTGAAGCTGTaGGTAGAGGTTCTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSLFVKL*VEVLPS
Trigger: AGAAGGCAGAACCTCTACTCACAGCTTCACGAACAG...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTTCTGTATCAAAAGTTTaGCTTGCTCTGTTCGTGAAG +
Preference number: 4 (lower is better)
Translates to: ELLSVKFQFLITIASKVASVSKV*LALFVK
Trigger: CTTCACGAACAGAGCAAGTCAAACTTTTGATACAGA...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATCACCGTAAGGATTGTTaGATGCTATGGCATAAACCA +
Preference number: 4 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNHRKDC*MLWHKP
Trigger: TGGTTTATGCCATAGCATTCAACAATCCTTACGGTG...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp AGGCATAGTTTAGCATCACGTCCAGTGATCAAAGAGATGAACACACCGGATAACCACCGTAAGGATTGTTaGATGCTATGGCATAAACCA +
Preference number: 4 (lower is better)
Translates to: RHSLASRPVIKEMNTPDNHRKDC*MLWHKP
Trigger: TGGTTTATGCCATAGCATTCAACAATCCTTACGGTG...GTTATCCGGTGTGTTCATCTCTTTGATCACTGGACGTGATGCTAAACTATGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp AGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGACTTCCTCGCCATTCTaGATGTCCCACAATTTGGCT +
Preference number: 4 (lower is better)
Translates to: SQTLCCVLPSPSNNNIGVTSSPF*MSHNLA
Trigger: AGCCAAATTGTGGGACATTCAGAATGGCGAGGAAGT...CACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCAAGCAAGGTTGCTCACTaGCCAGCTTCCTTCAGTCAA +
Preference number: 4 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSSKVAH*PASFSQ
Trigger: TTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCT...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCAGATAGAACGTGTGATTaGTGTTCTGGCCGAGTTTCT +
Preference number: 4 (lower is better)
Translates to: NTTEITGGISQTLCCVLPDRTCD*CSGRVS
Trigger: AGAAACTCGGCCAGAACAGCAATCACACGTTCTATC...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp TTACCATTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATAGCTTTAAACGGTGTATaGACACATACTCATACAATC +
Preference number: 4 (lower is better)
Translates to: LPLLARLLTDQLPSVNAIALNGV*THTHTI
Trigger: GATTGTATGAGTATGTGTGCATACACCGTTTAAAGC...TATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCACTCTGTGCCCTACATTaGTTTAAACGGTGTATGCAC +
Preference number: 4 (lower is better)
Translates to: NTTEITGGISQTLCCVLPLCALH*FKRCMH
Trigger: GTGCATACACCGTTTAAAGCAATGTAGGGCACAGAG...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CCA 90 bp CCTGTTTCCACACTCCAGAGTTTACAAGTTTTATCAAAGGACCCAGTGGCGATTGAATGTCCCACAATTTaGCTGTTGTGTCCATACTTC +
Preference number: 4 (lower is better)
Translates to: PVSTLQSLQVLSKDPVAIECPTI*LLCPYF
Trigger: GAAGTATGGACACAACAGCCAAATTGTGGGACATTC...AATCGCCACTGGGTCCTTTGATAAAACTTGTAAACTCTGGAGTGTGGAAACAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR TCA 90 bp ATGTGCTTTGAGAACCTTAAAAAGATAGAACGTGTGATTGCTGTTCTGGCCGAGCACCGTAAGGATTGTTaGATGCTATGGCATAAACCA +
Preference number: 4 (lower is better)
Translates to: MCFENLKKIERVIAVLAEHRKDC*MLWHKP
Trigger: TGGTTTATGCCATAGCATTCAACAATCCTTACGGTG...CTCGGCCAGAACAGCAATCACACGTTCTATCTTTTTAAGGTTCTCAAAGCACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR TCA 90 bp TTCATGACCTTCCAGTTTGGCAATGCATTTTCTTGTGGCAGCACTGAAAATTCTCTGCTGTATGACCCCTaGAGGTATGGTAACATTTTC +
Preference number: 4 (lower is better)
Translates to: FMTFQFGNAFSCGSTENSLLYDP*RYGNIF
Trigger: GAAAATGTTACCATACCTTCAGGGGTCATACAGCAG...AGAATTTTCAGTGCTGCCACAAGAAAATGCATTGCCAAACTGGAAGGTCATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCAGCAATCCCAATTGAATaGGGCACTGCTAATCTCAGC +
Preference number: 4 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSAIPIE*GTANLS
Trigger: GCTGAGATTAGCAGTGCCTCATTCAATTGGGATTGC...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATTCTTGTGGCAGCACTaGAAATTCTTGCTGTTCCAT +
Preference number: 4 (lower is better)
Translates to: NTTEITGGISQTLCCVLPFLWQH*KFLLFH
Trigger: ATGGAACAGCAAGAATTTTCAGTGCTGCCACAAGAA...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp TCCTTCAGTCAACGCCATATCCTACAGGTATTATCCTTGCTGCCTGTAATGACTATCAAAAGTTTGACTTaGTCTGTTCGTGAAGCTGTG +
Preference number: 4 (lower is better)
Translates to: SFSQRHILQVLSLLPVMTIKSLT*SVREAV
Trigger: CACAGCTTCACGAACAGAGCAAGTCAAACTTTTGAT...AGTCATTACAGGCAGCAAGGATAATACCTGTAGGATATGGCGTTGACTGAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp AGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGATAGAACGTGTGATTaGTGTTCTGGCCGAGTTTCT +
Preference number: 4 (lower is better)
Translates to: SQTLCCVLPSPSNNNIGVDRTCD*CSGRVS
Trigger: AGAAACTCGGCCAGAACAGCAATCACACGTTCTATC...CACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCATTCCAACATAATTCCTaGCGGGTAATACCGGAGCAG +
Preference number: 4 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSFQHNS*RVIPEQ
Trigger: CTGCTCCGGTATTACCCGCCAGGAATTATGTTGGAA...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp ATGTGCTTTGAGAACCTTAAAAAGATAGAACGTGTGATTGCTGTTCTGGCCGAGAGAGGTTCTGCCTTCTaGATTTCTTCTACTAACGCA +
Preference number: 4 (lower is better)
Translates to: MCFENLKKIERVIAVLAERGSAF*ISSTNA
Trigger: TGCGTTAGTAGAAGAAATCCAGAAGGCAGAACCTCT...CTCGGCCAGAACAGCAATCACACGTTCTATCTTTTTAAGGTTCTCAAAGCACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR CCA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTTGCAACATTAGTCAGTaGCAATATATGTGCTTTGAG +
Preference number: 4 (lower is better)
Translates to: ELLSVKFQFLITIASKVACNISQ*QYMCFE
Trigger: CTCAAAGCACATATATTGCCACTGACTAATGTTGCA...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp TCCTTCAGTCAACGCCATATCCTACAGGTATTATCCTTGCTGCCTGTAATGACTAGTATTTCATCATCATaGCCTGTTAAGGTTGCCACA +
Preference number: 4 (lower is better)
Translates to: SFSQRHILQVLSLLPVMTSISSS*PVKVAT
Trigger: TGTGGCAACCTTAACAGGCCATGATGATGAAATACT...AGTCATTACAGGCAGCAAGGATAATACCTGTAGGATATGGCGTTGACTGAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR TCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCATGCTGTTCCATCAGCTaGAGCAGTTGCAATAAGCTT +
Preference number: 4 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSCCSIS*SSCNKL
Trigger: AAGCTTATTGCAACTGCTTCAGCTGATGGAACAGCA...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000309931.3
CDS-3UTR TCA 90 bp AGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGATTGTTGACAGCAGATaGCACAGGCATAGTTTAGCA +
Preference number: 4 (lower is better)
Translates to: SQTLCCVLPSPSNNNIGVIVDSR*HRHSLA
Trigger: TGCTAAACTATGCCTGTGTCATCTGCTGTCAACAAT...CACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp GCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCATAACTTTGTCATCAAAAGTTTGACTTaGTCTGTTCGTGAAGCTGTG +
Preference number: 4 (lower is better)
Translates to: AVSCHRHQIIILEWHNFVIKSLT*SVREAV
Trigger: CACAGCTTCACGAACAGAGCAAGTCAAACTTTTGAT...GACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp ATGTGCTTTGAGAACCTTAAAAAGATAGAACGTGTGATTGCTGTTCTGGCCGAGATCAAAAGTTTGACTTaGTCTGTTCGTGAAGCTGTG +
Preference number: 4 (lower is better)
Translates to: MCFENLKKIERVIAVLAEIKSLT*SVREAV
Trigger: CACAGCTTCACGAACAGAGCAAGTCAAACTTTTGAT...CTCGGCCAGAACAGCAATCACACGTTCTATCTTTTTAAGGTTCTCAAAGCACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR GCA 90 bp AAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTACCGTTTTGTCAGAGCTaGCAGTTAGAAGATGGTTCC +
Preference number: 4 (lower is better)
Translates to: KVKSRRHVVKLFWSPFSVPFCQS*QLEDGS
Trigger: GGAACCATCTTCTAACTGGCAGCTCTGACAAAACGG...TACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp GCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCATAACTTTGTCCATTATGCTGTGTCCTaGCATCGCCATCAAATAATA +
Preference number: 4 (lower is better)
Translates to: AVSCHRHQIIILEWHNFVHYAVS*HRHQII
Trigger: TATTATTTGATGGCGATGGCAGGACACAGCATAATG...GACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp AGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGAGAGGTTCTGCCTTCTaGATTTCTTCTACTAACGCA +
Preference number: 4 (lower is better)
Translates to: SQTLCCVLPSPSNNNIGVRGSAF*ISSTNA
Trigger: TGCGTTAGTAGAAGAAATCCAGAAGGCAGAACCTCT...CACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp CCTGTTTCCACACTCCAGAGTTTACAAGTTTTATCAAAGGACCCAGTGGCGATTTGCAACATTAGTCAGTaGCAATATATGTGCTTTGAG +
Preference number: 4 (lower is better)
Translates to: PVSTLQSLQVLSKDPVAICNISQ*QYMCFE
Trigger: CTCAAAGCACATATATTGCCACTGACTAATGTTGCA...AATCGCCACTGGGTCCTTTGATAAAACTTGTAAACTCTGGAGTGTGGAAACAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR TCA 90 bp AGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGTCTGTATCAAAAGTTTaGCTTGCTCTGTTCGTGAAG +
Preference number: 4 (lower is better)
Translates to: SQTLCCVLPSPSNNNIGVSVSKV*LALFVK
Trigger: CTTCACGAACAGAGCAAGTCAAACTTTTGATACAGA...CACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp AAATCTTTGAAATTTCACCTTCATGACCTTCCAGTTTGGCAATGCATTTTCTTGCACACTACAACGGTATaGTCAAAAGACCCCGTGATG +
Preference number: 4 (lower is better)
Translates to: KSLKFHLHDLPVWQCIFLHTTTV*SKDPVM
Trigger: CATCACGGGGTCTTTTGATCATACCGTTGTAGTGTG...CAAGAAAATGCATTGCCAAACTGGAAGGTCATGAAGGTGAAATTTCAAAGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp AAATCTTTGAAATTTCACCTTCATGACCTTCCAGTTTGGCAATGCATTTTCTTGCCGTTTTGTCAGAGCTaGCAGTTAGAAGATGGTTCC +
Preference number: 4 (lower is better)
Translates to: KSLKFHLHDLPVWQCIFLPFCQS*QLEDGS
Trigger: GGAACCATCTTCTAACTGGCAGCTCTGACAAAACGG...CAAGAAAATGCATTGCCAAACTGGAAGGTCATGAAGGTGAAATTTCAAAGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR GCA 90 bp AGAACGTGTGATTGCTGTTCTGGCCGAGTTTCTCTTGCAACCTCTGTATCAAAATTCCAACATAATTCCTaGTATTCAGTAGTATCTTGG +
Preference number: 4 (lower is better)
Translates to: RTCDCCSGRVSLATSVSKFQHNS*YSVVSW
Trigger: CCAAGATACTACTGAATAGCAGGAATTATGTTGGAA...TTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAGAACAGCAATCACACGTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR CCA 90 bp GTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATCAGAATGTCCCACAATTTaGCTGTTGTGTCCATACTTC +
Preference number: 4 (lower is better)
Translates to: VKSRRHVVKLFWSPFSVSECPTI*LLCPYF
Trigger: GAAGTATGGACACAACAGCCAAATTGTGGGACATTC...TGATACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp AGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGAGTATTTCATCATCATaGCCTGTTAAGGTTGCCACA +
Preference number: 4 (lower is better)
Translates to: SQTLCCVLPSPSNNNIGVSISSS*PVKVAT
Trigger: TGTGGCAACCTTAACAGGCCATGATGATGAAATACT...CACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCATTCTTGTGGCAGCACTaGAAATTCTTGCTGTTCCAT +
Preference number: 4 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSFLWQH*KFLLFH
Trigger: ATGGAACAGCAAGAATTTTCAGTGCTGCCACAAGAA...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp AAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTAGCCCGATTTGTTAAGTaGAACATTAGTCAGTGGCAA +
Preference number: 4 (lower is better)
Translates to: KVKSRRHVVKLFWSPFSVARFVK*NISQWQ
Trigger: TTGCCACTGACTAATGTTGCACTTAACAAATCGGGC...TACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp GCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCATAACTTTGTCGTAAGGATTGTTGAATaGTATGGCATAAACCACATT +
Preference number: 4 (lower is better)
Translates to: AVSCHRHQIIILEWHNFVVRIVE*YGINHI
Trigger: AATGTGGTTTATGCCATAGCATTCAACAATCCTTAC...GACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR TCA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAAGAAGATGGTTCCCTTaGGGGTTGAAAGAAATCTTT +
Preference number: 4 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSRRWFP*GLKEIF
Trigger: AAAGATTTCTTTCAACCCTCAAGGGAACCATCTTCT...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp AAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTACATTATGCTGTGTCCTaGCATCGCCATCAAATAATA +
Preference number: 4 (lower is better)
Translates to: KVKSRRHVVKLFWSPFSVHYAVS*HRHQII
Trigger: TATTATTTGATGGCGATGGCAGGACACAGCATAATG...TACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCATGCAACATTAGTCAGTaGCAATATATGTGCTTTGAG +
Preference number: 4 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSCNISQ*QYMCFE
Trigger: CTCAAAGCACATATATTGCCACTGACTAATGTTGCA...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CCA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTTGTTAAGTTGTTCTaGTCTCCTTTTTCAGTATCA +
Preference number: 4 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSVVKLF*SPFSVS
Trigger: TGATACTGAAAAAGGAGACCAGAACAACTTAACAAC...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR GCA 90 bp AAATCTTTGAAATTTCACCTTCATGACCTTCCAGTTTGGCAATGCATTTTCTTGGTAAGGATTGTTGAATaGTATGGCATAAACCACATT +
Preference number: 4 (lower is better)
Translates to: KSLKFHLHDLPVWQCIFLVRIVE*YGINHI
Trigger: AATGTGGTTTATGCCATAGCATTCAACAATCCTTAC...CAAGAAAATGCATTGCCAAACTGGAAGGTCATGAAGGTGAAATTTCAAAGATTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS TCA 90 bp TTGGCTCACCAAAGACTGGCGGGTAATACCGGAGCAGGAGGCTCTTaGGCTTCATTTTCTTGCTCTCTTATCCCCGGCCGATGGGCTTCG +
Preference number: 5 (lower is better)
Translates to: LAHQRLAGNTGAGGS*ASFSCSLIPGRWAS
Trigger: CGAAGCCCATCGGCCGGGGATAAGAGAGCAAGAAAATGAAGCTCAAGAGCCTCCTGCTCCGGTATTACCCGCCAGTCTTTGGTGAGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR CAA 90 bp CTATGGCATAAACCACATTCCTGTGGCCCTCCAGCGTGTTCAGCTCCTCTCCAGTTGAGCTTCATTTTCTaGCTCTCTTATCCCCGGCCG +
Preference number: 5 (lower is better)
Translates to: LWHKPHSCGPPACSAPLQLSFIF*LSYPRP
Trigger: CGGCCGGGGATAAGAGAGCAAGAAAATGAAGCTCAA...CTGGAGAGGAGCTGAACACGCTGGAGGGCCACAGGAATGTGGTTTATGCCATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR CAA 90 bp GCACTGGCCAGTCTGAGCATCCCAGATTCTAGCCGTTTTGTCAGAGCTGCCAGTCAGATTCTAGCCGTTTaGTCAGAGCTGCCAGTTAGA +
Preference number: 5 (lower is better)
Translates to: ALASLSIPDSSRFVRAASQILAV*SELPVR
Trigger: TCTAACTGGCAGCTCTGACAAAACGGCTAGAATCTG...ACTGGCAGCTCTGACAAAACGGCTAGAATCTGGGATGCTCAGACTGGCCAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp ACCAGCTTCCTTCAGTCAACGCCATATCCTACAGGTATTATCCTTGCTGCCTGTATGGGCTTCGTAGCCTaGGAAACGGCTAAACAGCAG +
Preference number: 5 (lower is better)
Translates to: TSFLQSTPYPTGIILAACMGFVA*ETAKQQ
Trigger: CTGCTGTTTAGCCGTTTCCAAGGCTACGAAGCCCAT...ACAGGCAGCAAGGATAATACCTGTAGGATATGGCGTTGACTGAAGGAAGCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTCCATTGCTAGCAAGGTaGCTCACTGACCAGCTTCCT +
Preference number: 5 (lower is better)
Translates to: ELLSVKFQFLITIASKVAPLLAR*LTDQLP
Trigger: AGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGG...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp TTACCATTGCTAGCAAGGTTGCTCACTGACCAGCTTCCTTCAGTCAACGCCATACTGGCCGAGTTTCTCTaGCAACCTCTGTATCAAAAG +
Preference number: 5 (lower is better)
Translates to: LPLLARLLTDQLPSVNAILAEFL*QPLYQK
Trigger: CTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAG...TATGGCGTTGACTGAAGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp CTGAATGTCCCACAATTTGGCTGTTGTGTCCATACTTCCAGTCGCCACCAATGTCTGGCCGAGTTTCTCTaGCAACCTCTGTATCAAAAG +
Preference number: 5 (lower is better)
Translates to: LNVPQFGCCVHTSSRHQCLAEFL*QPLYQK
Trigger: CTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAG...ACATTGGTGGCGACTGGAAGTATGGACACAACAGCCAAATTGTGGGACATTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR CAA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTCCCACAATTTGGCTGTaGTGTCCATACTTCCAGTCG +
Preference number: 5 (lower is better)
Translates to: ELLSVKFQFLITIASKVAPTIWL*CPYFQS
Trigger: CGACTGGAAGTATGGACACAACAGCCAAATTGTGGG...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp CACACTCCAGAGTTTACAAGTTTTATCAAAGGACCCAGTGGCGATTTTGTCACCCCCACAATTTGGCTGTaGTGTCCATACTTCCAGTCG +
Preference number: 5 (lower is better)
Translates to: HTPEFTSFIKGPSGDFVTPTIWL*CPYFQS
Trigger: CGACTGGAAGTATGGACACAACAGCCAAATTGTGGG...GGTGACAAAATCGCCACTGGGTCCTTTGATAAAACTTGTAAACTCTGGAGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR CAA 90 bp GCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCATAACTTTGTCGCCCGTGCCCTGTCCTaGTCCTCCCAAAAGAAAAAT +
Preference number: 5 (lower is better)
Translates to: AVSCHRHQIIILEWHNFVARALS*SSQKKN
Trigger: ATTTTTCTTTTGGGAGGACAAGGACAGGGCACGGGC...GACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCAGTAGCATCCCACAGCTaGCAGGTTTTGTCCATAGAG +
Preference number: 5 (lower is better)
Translates to: NTTEITGGISQTLCCVLPVASHS*QVLSIE
Trigger: CTCTATGGACAAAACCTGCAAGCTGTGGGATGCTAC...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp GAGCTGCTGTCTGTGAAGTTCCAGTTCTTGATTACCATTGCTAGCAAGGTTGCTAATCCAGGAGACACGTaGTTAAGTTGTTCTGGTCTC +
Preference number: 5 (lower is better)
Translates to: ELLSVKFQFLITIASKVANPGDT*LSCSGL
Trigger: GAGACCAGAACAACTTAACAACGTGTCTCCTGGATT...AGCAACCTTGCTAGCAATGGTAATCAAGAACTGGAACTTCACAGACAGCAGCTC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATTGCTGTTCCATATTGTaGACAGCAGATGACACAGGC +
Preference number: 5 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNCCSIL*TADDTG
Trigger: GCCTGTGTCATCTGCTGTCAACAATATGGAACAGCA...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAGAGAGCAATCCCAATaGAATGAGGCACTGCTAATC +
Preference number: 5 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNREQSQ*NEALLI
Trigger: GATTAGCAGTGCCTCATTCAATTGGGATTGCTCTCT...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp TCCTTCAGTCAACGCCATATCCTACAGGTATTATCCTTGCTGCCTGTAATGACTCACAGCTTGCAGGTTTaGTCCATAGAGCCAGTTAAT +
Preference number: 5 (lower is better)
Translates to: SFSQRHILQVLSLLPVMTHSLQV*SIEPVN
Trigger: ATTAACTGGCTCTATGGACAAAACCTGCAAGCTGTG...AGTCATTACAGGCAGCAAGGATAATACCTGTAGGATATGGCGTTGACTGAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATCATGGCCTGTTAAGGTaGCCACACATTTTCCATTTG +
Preference number: 5 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNHGLLR*PHIFHL
Trigger: CAAATGGAAAATGTGTGGCAACCTTAACAGGCCATG...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCACAGATTCTAGCCGTTTaGTCAGAGCTGCCAGTTAGA +
Preference number: 5 (lower is better)
Translates to: NTTEITGGISQTLCCVLPQILAV*SELPVR
Trigger: TCTAACTGGCAGCTCTGACAAAACGGCTAGAATCTG...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp TTCCTGTTTCCACACTCCAGAGTTTACAAGTTTTATCAAAGGACCCAGTGGCGAAAACTTGCATATGATTaGGCTCACCAAAGACTGGCG +
Preference number: 5 (lower is better)
Translates to: FLFPHSRVYKFYQRTQWRKLAYD*AHQRLA
Trigger: CGCCAGTCTTTGGTGAGCCAAATCATATGCAAGTTT...TCGCCACTGGGTCCTTTGATAAAACTTGTAAACTCTGGAGTGTGGAAACAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS TCA 90 bp ATATTTACCTTCCTTCCAGTATCAGCGTCCCACACTACAACGGTATaGTCAAAAGACCCCGTGATGATTCTGTCTCCTGAGGTGTTAAAT +
Preference number: 5 (lower is better)
Translates to: IFTFLPVSASHTTTV*SKDPVMILSPEVLN
Trigger: ATTTAACACCTCAGGAGACAGAATCATCACGGGGTCTTTTGATCATACCGTTGTAGTGTGGGACGCTGATACTGGAAGGAAGGTAAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS TCA 90 bp AGAGAGCAATCCCAATTGAATGAGGCACTGCTAATCTCAGCACAATaGCCAATTAAGATATTTACCTTCCTTCCAGTATCAGCGTCCCAC +
Preference number: 5 (lower is better)
Translates to: REQSQLNEALLISAQ*PIKIFTFLPVSASH
Trigger: GTGGGACGCTGATACTGGAAGGAAGGTAAATATCTTAATTGGTCATTGTGCTGAGATTAGCAGTGCCTCATTCAATTGGGATTGCTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp ATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAAGCATGAGCCCGATTaGTTAAGTGCAACATTAGTC +
Preference number: 5 (lower is better)
Translates to: ITGGISQTLCCVLPSPSNKHEPD*LSATLV
Trigger: GACTAATGTTGCACTTAACAAATCGGGCTCATGCTT...ATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp ACTAACGCACTGACATCAGTGCTGGGACCAAGATCAAGCAAATCTATGGACTTAAAGCATGAGCCCGATTaGTTAAGTGCAACATTAGTC +
Preference number: 5 (lower is better)
Translates to: TNALTSVLGPRSSKSMDLKHEPD*LSATLV
Trigger: GACTAATGTTGCACTTAACAAATCGGGCTCATGCTT...TAAGTCCATAGATTTGCTTGATCTTGGTCCCAGCACTGATGTCAGTGCGTTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS-3UTR CAA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCACACAGCTTGCAGGTTTaGTCCATAGAGCCAGTTAAT +
Preference number: 5 (lower is better)
Translates to: NTTEITGGISQTLCCVLPHSLQV*SIEPVN
Trigger: ATTAACTGGCTCTATGGACAAAACCTGCAAGCTGTG...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp GCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCATAACTTTGTCCATGGCCTGTTAAGGTaGCCACACATTTTCCATTTG +
Preference number: 5 (lower is better)
Translates to: AVSCHRHQIIILEWHNFVHGLLR*PHIFHL
Trigger: CAAATGGAAAATGTGTGGCAACCTTAACAGGCCATG...GACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp GCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGGCATAACTTTGTCAATCCAGGAGACACGTaGTTAAGTTGTTCTGGTCTC +
Preference number: 5 (lower is better)
Translates to: AVSCHRHQIIILEWHNFVNPGDT*LSCSGL
Trigger: GAGACCAGAACAACTTAACAACGTGTCTCCTGGATT...GACAAAGTTATGCCACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp AAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTATTGAGCTTCATTTTCTaGCTCTCTTATCCCCGGCCG +
Preference number: 5 (lower is better)
Translates to: KVKSRRHVVKLFWSPFSVLSFIF*LSYPRP
Trigger: CGGCCGGGGATAAGAGAGCAAGAAAATGAAGCTCAA...TACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp AAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTACCCACAATTTGGCTGTaGTGTCCATACTTCCAGTCG +
Preference number: 5 (lower is better)
Translates to: KVKSRRHVVKLFWSPFSVPTIWL*CPYFQS
Trigger: CGACTGGAAGTATGGACACAACAGCCAAATTGTGGG...TACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTAGCATCCCACAGCTaGCAGGTTTTGTCCATAGAG +
Preference number: 5 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSVASHS*QVLSIE
Trigger: CTCTATGGACAAAACCTGCAAGCTGTGGGATGCTAC...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp AAATCTTTGAAATTTCACCTTCATGACCTTCCAGTTTGGCAATGCATTTTCTTGCCATTGCTAGCAAGGTaGCTCACTGACCAGCTTCCT +
Preference number: 5 (lower is better)
Translates to: KSLKFHLHDLPVWQCIFLPLLAR*LTDQLP
Trigger: AGGAAGCTGGTCAGTGAGCAACCTTGCTAGCAATGG...CAAGAAAATGCATTGCCAAACTGGAAGGTCATGAAGGTGAAATTTCAAAGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp AACACAACTGAAATAACTGGTGGCATTAGCCAAACATTATGCTGTGTCCTGCCAGTGAAGTTCCAGTTCTaGATTACCATTGCTAGCAAG +
Preference number: 5 (lower is better)
Translates to: NTTEITGGISQTLCCVLPVKFQF*ITIASK
Trigger: CTTGCTAGCAATGGTAATCAAGAACTGGAACTTCAC...TGGCAGGACACAGCATAATGTTTGGCTAATGCCACCAGTTATTTCAGTTGTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp AGGCATAGTTTAGCATCACGTCCAGTGATCAAAGAGATGAACACACCGGATAACCCTCAACTTAATATTTaGCATTTCCTGACTCTGTGC +
Preference number: 5 (lower is better)
Translates to: RHSLASRPVIKEMNTPDNPQLNI*HFLTLC
Trigger: GCACAGAGTCAGGAAATGCAAAATATTAAGTTGAGG...GTTATCCGGTGTGTTCATCTCTTTGATCACTGGACGTGATGCTAAACTATGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCACTGGCCGAGTTTCTCTaGCAACCTCTGTATCAAAAG +
Preference number: 5 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSLAEFL*QPLYQK
Trigger: CTTTTGATACAGAGGTTGCAAGAGAAACTCGGCCAG...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp AGCCAAACATTATGCTGTGTCCTGCCATCGCCATCAAATAATAATATTGGAGTGCTACAGGTATTATCCTaGCTGCCTGTAATGACTATG +
Preference number: 5 (lower is better)
Translates to: SQTLCCVLPSPSNNNIGVLQVLS*LPVMTM
Trigger: CATAGTCATTACAGGCAGCAAGGATAATACCTGTAG...CACTCCAATATTATTATTTGATGGCGATGGCAGGACACAGCATAATGTTTGGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp TTCATGACCTTCCAGTTTGGCAATGCATTTTCTTGTGGCAGCACTGAAAATTCTCTACAGGTATTATCCTaGCTGCCTGTAATGACTATG +
Preference number: 5 (lower is better)
Translates to: FMTFQFGNAFSCGSTENSLQVLS*LPVMTM
Trigger: CATAGTCATTACAGGCAGCAAGGATAATACCTGTAG...AGAATTTTCAGTGCTGCCACAAGAAAATGCATTGCCAAACTGGAAGGTCATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp TTGGCAATGCATTTTCTTGTGGCAGCACTGAAAATTCTTGCTGTTCCATATTGTAAGCATGAGCCCGATTaGTTAAGTGCAACATTAGTC +
Preference number: 5 (lower is better)
Translates to: LAMHFLVAALKILAVPYCKHEPD*LSATLV
Trigger: GACTAATGTTGCACTTAACAAATCGGGCTCATGCTT...ACAATATGGAACAGCAAGAATTTTCAGTGCTGCCACAAGAAAATGCATTGCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp AAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTAAGAGAGCAATCCCAATaGAATGAGGCACTGCTAATC +
Preference number: 5 (lower is better)
Translates to: KVKSRRHVVKLFWSPFSVREQSQ*NEALLI
Trigger: GATTAGCAGTGCCTCATTCAATTGGGATTGCTCTCT...TACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp AAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTAGTGAAGTTCCAGTTCTaGATTACCATTGCTAGCAAG +
Preference number: 5 (lower is better)
Translates to: KVKSRRHVVKLFWSPFSVVKFQF*ITIASK
Trigger: CTTGCTAGCAATGGTAATCAAGAACTGGAACTTCAC...TACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCATCTTGCTGTTCCATATaGTTGACAGCAGATGACACA +
Preference number: 5 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSSCCSI*LTADDT
Trigger: TGTGTCATCTGCTGTCAACAATATGGAACAGCAAGA...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS-3UTR CAA 90 bp AAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAGTAAGACACGTTGTTAAGTaGTTCTGGTCTCCTTTTTCA +
Preference number: 5 (lower is better)
Translates to: KVKSRRHVVKLFWSPFSVRHVVK*FWSPFS
Trigger: TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCT...TACTGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS-3UTR CAA 90 bp TTCAAAGTAAAATCCAGGAGACACGTTGTTAAGTTGTTCTGGTCTCCTTTTTCAAGACACGTTGTTAAGTaGTTCTGGTCTCCTTTTTCA +
Preference number: 5 (lower is better)
Translates to: FKVKSRRHVVKLFWSPFSRHVVK*FWSPFS
Trigger: TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCT...TGAAAAAGGAGACCAGAACAACTTAACAACGTGTCTCCTGGATTTTACTTTGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS CCA 72 bp GCACCGCGCGGTCCTGGGGCGCAGAGCTGGGAGGTCTaGCTCCGCGGGCGGTTGGTGGCGACCCGGGGCTCC +
Preference number: 6 (lower is better)
Translates to: APRGPGAQSWEV*LRGRLVATRGS
Trigger: GGAGCCCCGGGTCGCCACCAACCGCCCGCGGAGCCAGACCTCCCAGCTCTGCGCCCCAGGACCGCGCGGTGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS CCA 72 bp CGCGGGTGCGCATGCGCAGGTTGCACCGCGCGGTCCTaGGGCGCAGAGCTGGGAGGTCTGGCTCCGCGGGCG +
Preference number: 6 (lower is better)
Translates to: RGCACAGCTARS*GAELGGLAPRA
Trigger: CGCCCGCGGAGCCAGACCTCCCAGCTCTGCGCCCCAGGACCGCGCGGTGCAACCTGCGCATGCGCACCCGCG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS CCA 72 bp GCGCAGGTTGCACCGCGCGGTCCTGGGGCGCAGAGCTaGGAGGTCTGGCTCCGCGGGCGGTTGGTGGCGACC +
Preference number: 6 (lower is better)
Translates to: AQVAPRGPGAQS*EVWLRGRLVAT
Trigger: GGTCGCCACCAACCGCCCGCGGAGCCAGACCTCCCAGCTCTGCGCCCCAGGACCGCGCGGTGCAACCTGCGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS CAA 90 bp TGGAAACGGCTAAACAGCAGCGGGACGCGGGTGCGCATGCGCAGGTaGCACCGCGCGGTCCTGGGGCGCAGAGCTGGGAGGTCTGGCTCC +
Preference number: 6 (lower is better)
Translates to: WKRLNSSGTRVRMRR*HRAVLGRRAGRSGS
Trigger: GGAGCCAGACCTCCCAGCTCTGCGCCCCAGGACCGCGCGGTGCAACCTGCGCATGCGCACCCGCGTCCCGCTGCTGTTTAGCCGTTTCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS CAA 72 bp TTGCTCTCTTATCCCCGGCCGATGGGCTTCGTAGCCTaGGAAACGGCTAAACAGCAGCGGGACGCGGGTGCG +
Preference number: 6 (lower is better)
Translates to: LLSYPRPMGFVA*ETAKQQRDAGA
Trigger: CGCACCCGCGTCCCGCTGCTGTTTAGCCGTTTCCAAGGCTACGAAGCCCATCGGCCGGGGATAAGAGAGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS CAA 90 bp TTCATTTTCTTGCTCTCTTATCCCCGGCCGATGGGCTTCGTAGCCTaGGAAACGGCTAAACAGCAGCGGGACGCGGGTGCGCATGCGCAG +
Preference number: 6 (lower is better)
Translates to: FIFLLSYPRPMGFVA*ETAKQQRDAGAHAQ
Trigger: CTGCGCATGCGCACCCGCGTCCCGCTGCTGTTTAGCCGTTTCCAAGGCTACGAAGCCCATCGGCCGGGGATAAGAGAGCAAGAAAATGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS TCA 72 bp CCTCACCTGGCGGGTAATACCGGAGCAGGAGGCTCTTaGGCTTCATTTTCTTGCTCTCTTATCCCCGGCCGA +
Preference number: 6 (lower is better)
Translates to: PHLAGNTGAGGS*ASFSCSLIPGR
Trigger: TCGGCCGGGGATAAGAGAGCAAGAAAATGAAGCTCAAGAGCCTCCTGCTCCGGTATTACCCGCCAGGTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000440997.1
CDS TCA 72 bp CAAAGACTGGCGGGTAATACCGGAGCAGGAGGCTCTTaGGCTTCATTTTCTTGCTCTCTTATCCCCGGCCGA +
Preference number: 6 (lower is better)
Translates to: QRLAGNTGAGGS*ASFSCSLIPGR
Trigger: TCGGCCGGGGATAAGAGAGCAAGAAAATGAAGCTCAAGAGCCTCCTGCTCCGGTATTACCCGCCAGTCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS GCA 72 bp CACACCATCTCCAAAGACTCCGTAAGGATTGTTGAATaGTATGGCATAAACCACATTCCTGTGGCCCTCCAG +
Preference number: 6 (lower is better)
Translates to: HTISKDSVRIVE*YGINHIPVALQ
Trigger: CTGGAGGGCCACAGGAATGTGGTTTATGCCATAGCATTCAACAATCCTTACGGAGTCTTTGGAGATGGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000472604.1
CDS CAA 72 bp CTTCCTCGCCATTCTGAATGTCCCACAATTTGGCTGTaGTGTCCATACTTCCAGTCGCCACCAATGTGCTTT +
Preference number: 6 (lower is better)
Translates to: LPRHSECPTIWL*CPYFQSPPMCF
Trigger: AAAGCACATTGGTGGCGACTGGAAGTATGGACACAACAGCCAAATTGTGGGACATTCAGAATGGCGAGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS CCA 72 bp TGTAAACTTCCTCGCCATTCTGAATGTCCCACAATTTaGCTGTTGTGTCCATACTTCCAGTCGCCACCAATG +
Preference number: 6 (lower is better)
Translates to: CKLPRHSECPTI*LLCPYFQSPPM
Trigger: CATTGGTGGCGACTGGAAGTATGGACACAACAGCCAAATTGTGGGACATTCAGAATGGCGAGGAAGTTTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS GCA 72 bp CCTGACTCTGTGCCCTACATTGCTTTAAACGGTGTATaGACACATACTCATACAATCCTAACAAGGTGTGAG +
Preference number: 6 (lower is better)
Translates to: PDSVPYIALNGV*THTHTILTRCE
Trigger: CTCACACCTTGTTAGGATTGTATGAGTATGTGTGCATACACCGTTTAAAGCAATGTAGGGCACAGAGTCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000373666.6
CDS CAA 72 bp TGCTATTCAGTAGTATCTTGGAAACTTGCATATGATTaGGCTCACCAAAGACTGGCGGGTAATACCGGAGCA +
Preference number: 6 (lower is better)
Translates to: CYSVVSWKLAYD*AHQRLAGNTGA
Trigger: TGCTCCGGTATTACCCGCCAGTCTTTGGTGAGCCAAATCATATGCAAGTTTCCAAGATACTACTGAATAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454999.5
CDS CCA 72 bp CCAAGAATTGCACTCCTATTTCTGTCCCTAAGAAGCTaGGTGATCAATGGGTGTCACTTATTCTTTAAAGGT +
Preference number: 6 (lower is better)
Translates to: PRIALLFLSLRS*VINGCHLFFKG
Trigger: ACCTTTAAAGAATAAGTGACACCCATTGATCACCCAGCTTCTTAGGGACAGAAATAGGAGTGCAATTCTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000440997.1
CDS CAA 72 bp GACACTTCCTATCCAAACTTCATTGGGCAAGTGTATTaGGTTATCTTCTGCCTTGTGGTATGTTTTGCAGAT +
Preference number: 6 (lower is better)
Translates to: DTSYPNFIGQVY*VIFCLVVCFAD
Trigger: ATCTGCAAAACATACCACAAGGCAGAAGATAACCAAATACACTTGCCCAATGAAGTTTGGATAGGAAGTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000440997.1
CDS TCA 72 bp TCCCAATTGAATGAGGCACTGCTAATCTCAGCACAATaGCCAATTAAGATATTTACCTTCCTTCCAGTATCA +
Preference number: 6 (lower is better)
Translates to: SQLNEALLISAQ*PIKIFTFLPVS
Trigger: TGATACTGGAAGGAAGGTAAATATCTTAATTGGTCATTGTGCTGAGATTAGCAGTGCCTCATTCAATTGGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309931.3
ENST00000373666.6
CDS CCA 72 bp ACACTTCCTATCCAAACTTCATTGGGCAAGTGTATTTaGTTATCTTCTGCCTTGTGGTATGTTTTGCAGATT +
Preference number: 6 (lower is better)
Translates to: TLPIQTSLGKCI*LSSALWYVLQI
Trigger: AATCTGCAAAACATACCACAAGGCAGAAGATAACCAAATACACTTGCCCAATGAAGTTTGGATAGGAAGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000440997.1
CDS CAA 90 bp ATTCCCTCCTTTGAAATCTTTATGACACTTCCTATCCAAACTTCATaGGGCAAGTGTATTTGGTTATCTTCTGCCTTGTGGTATGTTTTG +
Preference number: 6 (lower is better)
Translates to: IPSFEIFMTLPIQTS*GKCIWLSSALWYVL
Trigger: CAAAACATACCACAAGGCAGAAGATAACCAAATACACTTGCCCAATGAAGTTTGGATAGGAAGTGTCATAAAGATTTCAAAGGAGGGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000440997.1
CDS CAA 72 bp TTTGAAATCTTTATGACACTTCCTATCCAAACTTCATaGGGCAAGTGTATTTGGTTATCTTCTGCCTTGTGG +
Preference number: 6 (lower is better)
Translates to: FEIFMTLPIQTS*GKCIWLSSALW
Trigger: CCACAAGGCAGAAGATAACCAAATACACTTGCCCAATGAAGTTTGGATAGGAAGTGTCATAAAGATTTCAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000440997.1