Pregenerated sensors for DAPK1-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000236709

Ensembl transcript IDs: ENST00000431813.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GATCGGGTTCCCTTTTGTTGTTCTAGTGAACAGGTAAAAACTCAGTaGAAGGCAGACTGGGAATGTTCTCCTGGGAGGTGGAGGTTGCAG	+
Preference number: 5 (lower is better) Translates to: DRVPFCCSSEQVKTQ*KADWECSPGRWRLQ Trigger: CTGCAACCTCCACCTCCCAGGAGAACATTCCCAGTCTGCCTTTCACTGAGTTTTTACCTGTTCACTAGAACAACAAAAGGGAACCCGATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000431813.1
CDS TCA 90 bp	AAAATCAAAATGCTGCTCGTGATGTATGCCTTAGAACAGGATTGCTaGCCTAAGGTCTGGGAACCTGCTAAGGCTGTGGGCTTATGCACT	+
Preference number: 5 (lower is better) Translates to: KIKMLLVMYALEQDC*PKVWEPAKAVGLCT Trigger: AGTGCATAAGCCCACAGCCTTAGCAGGTTCCCAGACCTTAGGTCAGCAATCCTGTTCTAAGGCATACATCACGAGCAGCATTTTGATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431813.1
CDS TCA 72 bp	ATGCTGCTCGTGATGTATGCCTTAGAACAGGATTGCTaGCCTAAGGTCTGGGAACCTGCTAAGGCTGTGGGC	+
Preference number: 6 (lower is better) Translates to: MLLVMYALEQDC*PKVWEPAKAVG Trigger: GCCCACAGCCTTAGCAGGTTCCCAGACCTTAGGTCAGCAATCCTGTTCTAAGGCATACATCACGAGCAGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431813.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu