RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DACT3 (Homo sapiens)

Ensembl gene IDs: ENSG00000197380

Ensembl transcript IDs: ENST00000300875.4, ENST00000391916.7, ENST00000410105.2

Found 258 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCAGGGCACTCTGCAGGGACCACCTGAGTCAGACACAGAGTCTCTaGCCAGGGTGCCAAGGGGATATCTTAAGGGTCCAGGGACATGGA +
Preference number: 1 (lower is better)
Translates to: PRALCRDHLSQTQSL*PGCQGDILRVQGHG
Trigger: TCCATGTCCCTGGACCCTTAAGATATCCCCTTGGCACCCTGGTCAGAGACTCTGTGTCTGACTCAGGTGGTCCCTGCAGAGTGCCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR TCA 90 bp CAGAGAAGGGGAACTGTCTTGCCCAAGGGCTTCCAAGCTAGAAGCTaGACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGG +
Preference number: 1 (lower is better)
Translates to: QRRGTVLPKGFQARS*TGSNRAPPHSSRWW
Trigger: CCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTCTAGCTTGGAAGCCCTTGGGCAAGACAGTTCCCCTTCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR GCA 90 bp CTCCTGAAAGCAGGCGCCAGTCACATTCTGGCCTCAGAGCCTTTCTaGTTCCCATTCCAGATTCCAGATGCCCGGAATGCTCTTCCTTCT +
Preference number: 1 (lower is better)
Translates to: LLKAGASHILASEPF*FPFQIPDARNALPS
Trigger: AGAAGGAAGAGCATTCCGGGCATCTGGAATCTGGAATGGGAAGCAGAAAGGCTCTGAGGCCAGAATGTGACTGGCGCCTGCTTTCAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR CCA 90 bp CTGCTTCCCATTCCAGATTCCAGATGCCCGGAATGCTCTTCCTTCTaGATATCTGCTAGGTCCACTCCCCCACTTAGTTCAGGGCACAAC +
Preference number: 1 (lower is better)
Translates to: LLPIPDSRCPECSSF*ISARSTPPLSSGHN
Trigger: GTTGTGCCCTGAACTAAGTGGGGGAGTGGACCTAGCAGATATCCAGAAGGAAGAGCATTCCGGGCATCTGGAATCTGGAATGGGAAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR CCA 90 bp AGACCTGCTCATAACCATGTGAAAAGGAAATGTCACAGCTGGAATTaGAATCCAGGCCCGATTCGGAAGTCTGTGCCCACAACCATCCTC +
Preference number: 1 (lower is better)
Translates to: RPAHNHVKRKCHSWN*NPGPIRKSVPTTIL
Trigger: GAGGATGGTTGTGGGCACAGACTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATGGTTATGAGCAGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR TCA 90 bp GTGACTGCCATGCACCAAGTCCAATGCCTTAGAGCAGAGGCTCACTaGATATTCAAAAATATCCCCTTAGGGCAGGCACTGTTTGTGTGT +
Preference number: 1 (lower is better)
Translates to: VTAMHQVQCLRAEAH*IFKNIPLGQALFVC
Trigger: ACACACAAACAGTGCCTGCCCTAAGGGGATATTTTTGAATATTCAGTGAGCCTCTGCTCTAAGGCATTGGACTTGGTGCATGGCAGTCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR CCA 90 bp AATAAGAGACCTGCTCATAACCATGTGAAAAGGAAATGTCACAGCTaGAATTGGAATCCAGGCCCGATTCGGAAGTCTGTGCCCACAACC +
Preference number: 1 (lower is better)
Translates to: NKRPAHNHVKRKCHS*NWNPGPIRKSVPTT
Trigger: GGTTGTGGGCACAGACTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATGGTTATGAGCAGGTCTCTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR TCA 90 bp TGGAAAAACAGAGACCCAGAAATAAGAGACCTGCTCATAACCATGTaGAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTC +
Preference number: 1 (lower is better)
Translates to: WKNRDPEIRDLLITM*KGNVTAGIGIQARF
Trigger: GAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATGGTTATGAGCAGGTCTCTTATTTCTGGGTCTCTGTTTTTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR TCA 90 bp GTTAGTCCAAAGGAAAAAGAGCATTTCTCCCATTTAATCATTCAGTaGGAGTCCACCACATATGTTACACTGTGCATTTATTTACAAAGA +
Preference number: 1 (lower is better)
Translates to: VSPKEKEHFSHLIIQ*ESTTYVTLCIYLQR
Trigger: TCTTTGTAAATAAATGCACAGTGTAACATATGTGGTGGACTCTCACTGAATGATTAAATGGGAGAAATGCTCTTTTTCCTTTGGACTAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000391916.7
3UTR-3UTR TCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCGATCTCCTGACCTCGTaGTCCTCCCGCCTCGGCCTC +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATDLLTS*SSRLGL
Trigger: GAGGCCGAGGCGGGAGGATCACGAGGTCAGGAGATC...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR TCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCGAACTCCAGACCTCGTaGTCTGCCCGTCTCGGCCTC +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATELQTS*SARLGL
Trigger: GAGGCCGAGACGGGCAGATCACGAGGTCTGGAGTTC...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR GCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCGCCCACCTCCCAAAGTaGTGGGATTACAGGCGTGAG +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATAHLPK*WDYRRE
Trigger: CTCACGCCTGTAATCCCAGCACTTTGGGAGGTGGGC...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR CCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCCCGTGTTCGCCAGGATaGTCTCGATCTCCTGACCTC +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATPCSPG*SRSPDL
Trigger: GAGGTCAGGAGATCGAGACCATCCTGGCGAACACGG...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR TCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCACTCCTGATCTCAGGTaGTCCACCTGCTTTGGCCTC +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATTPDLR*STCFGL
Trigger: GAGGCCAAAGCAGGTGGATCACCTGAGATCAGGAGT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR GCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCTCACCCTGGCTAGAGTaGAGTGGCTCCATCTTGGCT +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATSPWLE*SGSILA
Trigger: AGCCAAGATGGAGCCACTGCACTCTAGCCAGGGTGA...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR GCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCACCATCTCAGCTCACTaGAACCTCTGCCTCCCAGGT +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATTISAH*NLCLPG
Trigger: ACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATGGT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR TCA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGGAGGTGCAGAGGCCATaGAGGGGGAGCCCAAGCAAA +
Preference number: 2 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGEVQRP*RGSPSK
Trigger: TTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTC...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCACAGGCATGAACCACTaGGCTGACCCTTCTCCTCTA +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATTGMNH*ADPSPL
Trigger: TAGAGGAGAAGGGTCAGCTCAGTGGTTCATGCCTGT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR GCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCAGGCATGCACCACAATaGCTGGCTATTGAGGCACTG +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATRHAPQ*LAIEAL
Trigger: CAGTGCCTCAATAGCCAGGCATTGTGGTGCATGCCT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR CCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGGGAAGGGTCAGTGGTTaGGAGTGTGGAGGTGCAGAG +
Preference number: 2 (lower is better)
Translates to: GTAEGHQASPIPSHREWGGRVSG*ECGGAE
Trigger: CTCTGCACCTCCACACTCCCAACCACTGACCCTTCC...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
61% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR GCA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGTTGGGAGTGTGGAGGTaGAGAGGCCATGAAGGGGGA +
Preference number: 2 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGLGVWR*RGHEGG
Trigger: TCCCCCTTCATGGCCTCTGCACCTCCACACTCCCAA...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR GCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCATGATCTCAGCTCACTaGAATCTCTGCCACCCAGGT +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATMISAH*NLCHPG
Trigger: ACCTGGGTGGCAGAGATTGCAGTGAGCTGAGATCAT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR CCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGCAGTGGTTGGGAGTGTaGAGGTGCAGAGGCCATGAA +
Preference number: 2 (lower is better)
Translates to: GTAEGHQASPIPSHREWGQWLGV*RCRGHE
Trigger: TTCATGGCCTCTGCACCTCCACACTCCCAACCACTG...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGTCCTCTCGGTGGTGGTaGGGGAGCCTTTTCAACCAA +
Preference number: 2 (lower is better)
Translates to: GTAEGHQASPIPSHREWGSSRWW*GSLFNQ
Trigger: TTGGTTGAAAAGGCTCCCCCACCACCACCGAGAGGA...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp AGGGTGCCAAGGGGATATCTTAAGGGTCCAGGGACATGGAGGGGGCACTTTGTGAGGGCTCATCAGGAATaGGAGGGAGAGCGGTGGAGG +
Preference number: 2 (lower is better)
Translates to: RVPRGYLKGPGTWRGHFVRAHQE*EGERWR
Trigger: CCTCCACCGCTCTCCCTCTCATTCCTGATGAGCCCT...CACAAAGTGCCCCCTCCATGTCCCTGGACCCTTAAGATATCCCCTTGGCACCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCCATGAACCACTGAGCTaGCCCTTCTCCTCTACTTAT +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATHEPLS*PFSSTY
Trigger: ATAAGTAGAGGAGAAGGGTCAGCTCAGTGGTTCATG...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR TCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGCAAGGAAAGGAGGAATaGGAGGGCTCATCAGGAATG +
Preference number: 2 (lower is better)
Translates to: GTAEGHQASPIPSHREWGQGKEE*EGSSGM
Trigger: CATTCCTGATGAGCCCTCTCATTCCTCCTTTCCTTG...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCATGCACCACAATGCCTaGCTATTGAGGCACTGTTAT +
Preference number: 2 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATMHHNA*LLRHCY
Trigger: ATAACAGTGCCTCAATAGCCAGGCATTGTGGTGCAT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR GCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCTTCCCAGGGCACTCTaGAGGGACCACCTGAGTCAG +
Preference number: 2 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLLPRAL*RDHLSQ
Trigger: CTGACTCAGGTGGTCCCTGCAGAGTGCCCTGGGAAG...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp AGGGTGCCAAGGGGATATCTTAAGGGTCCAGGGACATGGAGGGGGCACTTTGTGTCCTCTCGGTGGTGGTaGGGGAGCCTTTTCAACCAA +
Preference number: 2 (lower is better)
Translates to: RVPRGYLKGPGTWRGHFVSSRWW*GSLFNQ
Trigger: TTGGTTGAAAAGGCTCCCCCACCACCACCGAGAGGA...CACAAAGTGCCCCCTCCATGTCCCTGGACCCTTAAGATATCCCCTTGGCACCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCGAGGTGCAGAGGCCATaGAGGGGGAGCCCAAGCAAA +
Preference number: 2 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLEVQRP*RGSPSK
Trigger: TTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTC...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCAGACACAGAGTCTCTaGCCAGGGTGCCAAGGGGAT +
Preference number: 2 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLQTQSL*PGCQGD
Trigger: ATCCCCTTGGCACCCTGGTCAGAGACTCTGTGTCTG...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTGGAAGGGTCAGTGGTTaGGAGTGTGGAGGTGCAGAG +
Preference number: 2 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLGRVSG*ECGGAE
Trigger: CTCTGCACCTCCACACTCCCAACCACTGACCCTTCC...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR GCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCTTGGGAGTGTGGAGGTaGAGAGGCCATGAAGGGGGA +
Preference number: 2 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLLGVWR*RGHEGG
Trigger: TCCCCCTTCATGGCCTCTGCACCTCCACACTCCCAA...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTATGTGGAAGGGTCAGTaGTTGGGAGTGTGGAGGTGC +
Preference number: 2 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLMWKGQ*LGVWRC
Trigger: GCACCTCCACACTCCCAACCACTGACCCTTCCACAT...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGGGCTCATCAGGAATaGGAGGGAGAGCGGTGGAGG +
Preference number: 2 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQRAHQE*EGERWR
Trigger: CCTCCACCGCTCTCCCTCTCATTCCTGATGAGCCCT...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAGGGGCACTTTGTGAATaGGAGGGGGCCATAGCTGGG +
Preference number: 2 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQGALCE*EGAIAG
Trigger: CCCAGCTATGGCCCCCTCTCATTCACAAAGTGCCCC...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGGGGCACTTTGTGAATaGGAGGGGGCCATAGCTGGG +
Preference number: 2 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKGALCE*EGAIAG
Trigger: CCCAGCTATGGCCCCCTCTCATTCACAAAGTGCCCC...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTGTCCAGGGATCGAAGTaGAAGAGTCCTTCTTTCCAG +
Preference number: 2 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLVQGSK*KSPSFQ
Trigger: CTGGAAAGAAGGACTCTTTCACTTCGATCCCTGGAC...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCAGAGGGGGCCATAGCTaGGCAAGGAAAGGAGGAATG +
Preference number: 2 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPRGGHS*ARKGGM
Trigger: CATTCCTCCTTTCCTTGCCCAGCTATGGCCCCCTCT...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCTCTGCAGGGACCACCTaGGTCAGACACAGAGTCTCT +
Preference number: 2 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTSAGTT*VRHRVS
Trigger: AGAGACTCTGTGTCTGACTCAGGTGGTCCCTGCAGA...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp AAGCTAGAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGAAAACGATGGTCTTTaGAAGGTAGATGTGGAAGGG +
Preference number: 2 (lower is better)
Translates to: KLEAELGQTGLLPIPLGGENDGL*KVDVEG
Trigger: CCCTTCCACATCTACCTTCCAAAGACCATCGTTTTC...ACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTCTAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCCAAGGAAAGGAGGAATaGGAGGGCTCATCAGGAATG +
Preference number: 2 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPQGKEE*EGSSGM
Trigger: CATTCCTGATGAGCCCTCTCATTCCTCCTTTCCTTG...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR GCA 90 bp AAAAATACTAGATTGGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCGAAGGGGAACTGTCTTaGCCAAGGGCTTCCAAGCTA +
Preference number: 2 (lower is better)
Translates to: KNTRLEQLRVIRLPPFPLEGELS*PRASKL
Trigger: TAGCTTGGAAGCCCTTGGGCAAGACAGTTCCCCTTC...GAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAGTATTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR GCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTGCTGGGATACAGGCATaGACCACAATGCCTGGCTAT +
Preference number: 2 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIAGIQA*TTMPGY
Trigger: ATAGCCAGGCATTGTGGTGCATGCCTGTATCCCAGC...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR CCA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCAAGGGTCCAGGGACATaGAGGGGGCACTTTGTGAAT +
Preference number: 2 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTKGPGT*RGHFVN
Trigger: ATTCACAAAGTGCCCCCTCCATGTCCCTGGACCCTT...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTTGTCACAGCTGGAATTaGAATCCAGGCCCGATTCGG +
Preference number: 2 (lower is better)
Translates to: FRAQLKCYSLSEALPSHICHSWN*NPGPIR
Trigger: CCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACA...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR TCA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCTTCCAAGCTAGAAGCTaGACTGGGTCAAACAGGGCT +
Preference number: 2 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTFQARS*TGSNRA
Trigger: AGCCCTGTTTGACCCAGTTCAGCTTCTAGCTTGGAA...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR GCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTATGCACCAAGTCCAATaGCTTAGAGCAGAGGCTCAC +
Preference number: 2 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIMHQVQ*LRAEAH
Trigger: GTGAGCCTCTGCTCTAAGGCATTGGACTTGGTGCAT...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR CCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTAGGAAATGTCACAGCTaGAATTGGAATCCAGGCCCG +
Preference number: 2 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLRKCHS*NWNPGP
Trigger: CGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCT...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR GCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCCCGAATTACCCCTTTTaGATACATGGACACTTACTG +
Preference number: 2 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLPNYPF*IHGHLL
Trigger: CAGTAAGTGTCCATGTATGCAAAAGGGGTAATTCGG...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTAGTCTTCAGAGTAGATaGGACTACAGGCACACATCA +
Preference number: 2 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLSLQSR*DYRHTS
Trigger: TGATGTGTGCCTGTAGTCCCATCTACTCTGAAGACT...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR TCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTCTGCTCATAACCATGTaGAAAGGAAATGTCACAGCT +
Preference number: 2 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLLLITM*KGNVTA
Trigger: AGCTGTGACATTTCCTTTTCACATGGTTATGAGCAG...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR TCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGCAGACACAGAGTCTCTaGCCAGGGTGCCAAGGGGAT +
Preference number: 2 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWQTQSL*PGCQGD
Trigger: ATCCCCTTGGCACCCTGGTCAGAGACTCTGTGTCTG...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGTCTGCAGGGACCACCTaGGTCAGACACAGAGTCTCT +
Preference number: 2 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWSAGTT*VRHRVS
Trigger: AGAGACTCTGTGTCTGACTCAGGTGGTCCCTGCAGA...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR TCA 90 bp CCACATATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGACTAGATTGGAACAGCTaGGGGTCATCAGGCTTCCCC +
Preference number: 2 (lower is better)
Translates to: PHMLHCAFIYKEVRETHRLDWNS*GSSGFP
Trigger: GGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAG...TCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACATATGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000391916.7
3UTR-3UTR TCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTACTTACTTGTATGAATaGATGACAGCAGTTCCTGTT +
Preference number: 2 (lower is better)
Translates to: FRAQLKCYSLSEALPSHITYLYE*MTAVPV
Trigger: AACAGGAACTGCTGTCATTCATTCATACAAGTAAGT...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR CCA 90 bp CCACATATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGACAGTGGTTGGGAGTGTaGAGGTGCAGAGGCCATGAA +
Preference number: 2 (lower is better)
Translates to: PHMLHCAFIYKEVRETHRQWLGV*RCRGHE
Trigger: TTCATGGCCTCTGCACCTCCACACTCCCAACCACTG...TCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACATATGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000391916.7
3UTR-3UTR CCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGGAAAACGATGGTCTTTaGAAGGTAGATGTGGAAGGG +
Preference number: 2 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWENDGL*KVDVEG
Trigger: CCCTTCCACATCTACCTTCCAAAGACCATCGTTTTC...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGAAGCAGAGAAAACGATaGTCTTTGGAAGGTAGATGT +
Preference number: 2 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWKQRKR*SLEGRC
Trigger: ACATCTACCTTCCAAAGACCATCGTTTTCTCTGCTT...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CAA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCTGGGGTCTCACTGTGTaGCCCAGTCTAGTCTCCAGC +
Preference number: 3 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATWGLTV*PSLVSS
Trigger: GCTGGAGACTAGACTGGGCAACACAGTGAGACCCCA...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR CAA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCCACAATGCCTGGCTATaGAGGCACTGTTATTATACC +
Preference number: 3 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATHNAWL*RHCYYT
Trigger: GGTATAATAACAGTGCCTCAATAGCCAGGCATTGTG...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR TCA 72 bp TCCTCTACTTATAGGACTCCAGCCACACTGGCCTCCTaGAAGCAGGCGCCAGTCACATTCTGGCCTCAGAGC +
Preference number: 3 (lower is better)
Translates to: SSTYRTPATLAS*KQAPVTFWPQS
Trigger: GCTCTGAGGCCAGAATGTGACTGGCGCCTGCTTTCAGGAGGCCAGTGTGGCTGGAGTCCTATAAGTAGAGGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR TCA 72 bp ATCTTAAGGGTCCAGGGACATGGAGGGGGCACTTTGTaGATGAGAGGGGGCCATAGCTGGGCAAGGAAAGGA +
Preference number: 3 (lower is better)
Translates to: ILRVQGHGGGTL*MRGGHSWARKG
Trigger: TCCTTTCCTTGCCCAGCTATGGCCCCCTCTCATTCACAAAGTGCCCCCTCCATGTCCCTGGACCCTTAAGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR-3UTR CAA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCTCATTACTGTTCATTTaGTTCATTGCTCCTGGGATA +
Preference number: 3 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATSLLFI*FIAPGI
Trigger: TATCCCAGGAGCAATGAACAAAATGAACAGTAATGA...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR GCA 72 bp ATGAGGAAAGTGACGCCCAGAGAAGGGGAACTGTCTTaGCCAAGGGCTTCCAAGCTAGAAGCTGAACTGGGT +
Preference number: 3 (lower is better)
Translates to: MRKVTPREGELS*PRASKLEAELG
Trigger: ACCCAGTTCAGCTTCTAGCTTGGAAGCCCTTGGGCAAGACAGTTCCCCTTCTCTGGGCGTCACTTTCCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR GCA 72 bp TTTCTGCTTCCCATTCCAGATTCCAGATGCCCGGAATaGTCTTCCTTCTGGATATCTGCTAGGTCCACTCCC +
Preference number: 3 (lower is better)
Translates to: FLLPIPDSRCPE*SSFWISARSTP
Trigger: GGGAGTGGACCTAGCAGATATCCAGAAGGAAGAGCATTCCGGGCATCTGGAATCTGGAATGGGAAGCAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR CCA 72 bp ATTCCAGATTCCAGATGCCCGGAATGCTCTTCCTTCTaGATATCTGCTAGGTCCACTCCCCCACTTAGTTCA +
Preference number: 3 (lower is better)
Translates to: IPDSRCPECSSF*ISARSTPPLSS
Trigger: TGAACTAAGTGGGGGAGTGGACCTAGCAGATATCCAGAAGGAAGAGCATTCCGGGCATCTGGAATCTGGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR TCA 72 bp ACCTCCGAATCCTCCATAATTGTCCAGGGATCGAAGTaGAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCT +
Preference number: 3 (lower is better)
Translates to: TSESSIIVQGSK*KSPSFQVLPTP
Trigger: AGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCGATCCCTGGACAATTATGGAGGATTCGGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR CCA 72 bp CATAACCATGTGAAAAGGAAATGTCACAGCTGGAATTaGAATCCAGGCCCGATTCGGAAGTCTGTGCCCACA +
Preference number: 3 (lower is better)
Translates to: HNHVKRKCHSWN*NPGPIRKSVPT
Trigger: TGTGGGCACAGACTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATGGTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR CCA 72 bp CCTGCTCATAACCATGTGAAAAGGAAATGTCACAGCTaGAATTGGAATCCAGGCCCGATTCGGAAGTCTGTG +
Preference number: 3 (lower is better)
Translates to: PAHNHVKRKCHS*NWNPGPIRKSV
Trigger: CACAGACTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATGGTTATGAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR-3UTR CAA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCGAATTACCCCTTTaGCATACATGGACACTTACT +
Preference number: 3 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKTELPL*HTWTLT
Trigger: AGTAAGTGTCCATGTATGCAAAAGGGGTAATTCGGT...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
3UTR TCA 72 bp AGAGACCCAGAAATAAGAGACCTGCTCATAACCATGTaGAAAGGAAATGTCACAGCTGGAATTGGAATCCAG +
Preference number: 3 (lower is better)
Translates to: RDPEIRDLLITM*KGNVTAGIGIQ
Trigger: CTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATGGTTATGAGCAGGTCTCTTATTTCTGGGTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
3UTR TCA 72 bp ATAGTGGGGGCTCAAAAACTTACTTGTATGAATGAATaGCAGCAGTTCCTGTTTACCAGTGACTGCCATGCA +
Preference number: 3 (lower is better)
Translates to: IVGAQKLTCMNE*QQFLFTSDCHA
Trigger: TGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATTCATTCATACAAGTAAGTTTTTGAGCCCCCACTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGCGTCGGGTAGGGCGCTaGGAAGGACCGCGGCACCGC +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGRRVGR*EGPRHR
Trigger: GCGGTGCCGCGGTCCTTCTCAGCGCCCTACCCGACG...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGCCTCGGGTGGCCGCCTaGGCGCCCGGGATGTACTGC +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGPRVAA*APGMYC
Trigger: GCAGTACATCCCGGGCGCGCAGGCGGCCACCCGAGG...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGCGGCGTGCAGGGGGCTaGGCGTCAGAAAGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGRRAGG*ASERAR
Trigger: CCGGGCCCTTTCTGACGCCCAGCCCCCTGCACGCCG...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGGTGGCCGCCACCAGCTaGTGCGGCCACACGAGGCCA +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGVAATS*CGHTRP
Trigger: TGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGCCAC...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
67% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGGCCTGCGGGCGCCCCTaGACCTGCTCCACCCCCAGA +
Preference number: 4 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGACGRP*TCSTPR
Trigger: TCTGGGGGTGGAGCAGGTGCAGGGGCGCCCGCAGGC...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAAGCCGCCACCAGCTGCTaGGGCCACACGAGGCCACCG +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKAATSC*GHTRPP
Trigger: CGGTGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGC...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp AGGGTGCCAAGGGGATATCTTAAGGGTCCAGGGACATGGAGGGGGCACTTTGTGGCCTGCGGGCGCCCCTaGACCTGCTCCACCCCCAGA +
Preference number: 4 (lower is better)
Translates to: RVPRGYLKGPGTWRGHFVACGRP*TCSTPR
Trigger: TCTGGGGGTGGAGCAGGTGCAGGGGCGCCCGCAGGC...CACAAAGTGCCCCCTCCATGTCCCTGGACCCTTAAGATATCCCCTTGGCACCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGCCGGAGCGCTGGGACTaGCGTCTCCTAGGGACTTGG +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGPERWD*RLLGTW
Trigger: CCAAGTCCCTAGGAGACGCCAGTCCCAGCGCTCCGG...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGCGTCGATCTCCGCAGTaGAGCGCCAGCGACGGCAGG +
Preference number: 4 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGRRSPQ*SASDGR
Trigger: CCTGCCGTCGCTGGCGCTCCACTGCGGAGATCGACG...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCAGGCTGGCAGTTTCCTaGGGGCAGGGATTTGCCTGT +
Preference number: 4 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATRLAVS*GQGFAC
Trigger: ACAGGCAAATCCCTGCCCTCAGGAAACTGCCAGCCT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCATGCCATTCTCCTCCTaGGTGGCTGGGACTACAGGC +
Preference number: 4 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATMPFSS*VAGTTG
Trigger: GCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCAT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGACACGAGGCCACCGCTaGCGTCTGAGTCGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGTRGHR*RLSRWR
Trigger: CCTCCAGCGACTCAGACGGCAGCGGTGGCCTCGTGT...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAACCACCTCCGGAGCGCTaGGACTGGCGTCTCCTAGGG +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKPPPER*DWRLLG
Trigger: CCCTAGGAGACGCCAGTCCCAGCGCTCCGGAGGTGG...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGGCGATTCTCCCTCGCTaGCGCTCGATTCGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGAILPR*RSIRSP
Trigger: GGGAGAGCGAATCGAGCGCCAGCGAGGGAGAATCGC...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp AGGGTGCCAAGGGGATATCTTAAGGGTCCAGGGACATGGAGGGGGCACTTTGTGGCCACCGCTGCCGTCTaGGTCGCTGGAGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: RVPRGYLKGPGTWRGHFVATAAV*VAGGRA
Trigger: AGCTCTGCCTCCAGCGACTCAGACGGCAGCGGTGGC...CACAAAGTGCCCCCTCCATGTCCCTGGACCCTTAAGATATCCCCTTGGCACCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCGCAGCGGGCTCGGGTaGCGCCTCCGACTCCCACGA +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLRSGLG*RLRLPR
Trigger: TCGTGGGAGTCGGAGGCGGCACCCGAGCCCGCTGCG...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTGCCGCCACCAGCTGCTaGGGCCACACGAGGCCACCG +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLAATSC*GHTRPP
Trigger: CGGTGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGC...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp AAGCTAGAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGCCAGCCGCAGCGCCTaGTGCACGCGGTACTCCTGC +
Preference number: 4 (lower is better)
Translates to: KLEAELGQTGLLPIPLGGASRSA*CTRYSC
Trigger: GCAGGAGTACCGCGTGCAGCAGGCGCTGCGGCTGGC...ACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTCTAGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000391916.7
CDS-3UTR CCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTTCAAGGCGGCAGGGCTaGTGGGGTGGCCCCCGACGC +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLSRRQG*WGGPRR
Trigger: GCGTCGGGGGCCACCCCACCAGCCCTGCCGCCTTGA...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCTCCCGGGGTGGTGACTaGTCCACGCTGCGGCCGCGG +
Preference number: 4 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLSRGGD*STLRPR
Trigger: CCGCGGCCGCAGCGTGGAGCAGTCACCACCCCGGGA...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp AGGGTGCCAAGGGGATATCTTAAGGGTCCAGGGACATGGAGGGGGCACTTTGTGAGGCTGGTCTCAGACTaGGAGCGCGAGGCCTTGCGG +
Preference number: 4 (lower is better)
Translates to: RVPRGYLKGPGTWRGHFVRLVSD*EREALR
Trigger: CCGCAAGGCCTCGCGCTCCCAGTCTGAGACCAGCCT...CACAAAGTGCCCCCTCCATGTCCCTGGACCCTTAAGATATCCCCTTGGCACCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCACGCTCCCGGGGTGGTaGCTGCTCCACGCTGCGGCC +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPTLPGW*LLHAAA
Trigger: GGCCGCAGCGTGGAGCAGTCACCACCCCGGGAGCGT...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAAAGGGCTCATCAGGAATaGGAGGGAGAGCGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKRAHQE*EGERWR
Trigger: CCTCCACCGCTCTCCCTCTCATTCCTGATGAGCCCT...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAATCTCACTGGCATAGATaGCCCGGGGCTCAGAGGGAC +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKSHWHR*PGAQRD
Trigger: GTCCCTCTGAGCCCCGGGGCATCTATGCCAGTGAGA...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCGTGGCCGCCACCAGCTaGTGCGGCCACACGAGGCCA +
Preference number: 4 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLVAATS*CGHTRP
Trigger: TGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGCCAC...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCGCCTCAGAGCCTTTCTaGTTCCCATTCCAGATTCCA +
Preference number: 4 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATASEPF*FPFQIP
Trigger: TGGAATCTGGAATGGGAAGCAGAAAGGCTCTGAGGC...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCACCTCCGGAGCGCTaGGACTGGCGTCTCCTAGGG +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLPPPER*DWRLLG
Trigger: CCCTAGGAGACGCCAGTCCCAGCGCTCCGGAGGTGG...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCCGGCGTGCAGGGGGCTaGGCGTCAGAAAGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPRRAGG*ASERAR
Trigger: CCGGGCCCTTTCTGACGCCCAGCCCCCTGCACGCCG...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCGCAGGGCTGGTGGGGTaGCCCCCGACGCGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPAGLVG*PPTRSN
Trigger: GTTGGAGCGCGTCGGGGGCCACCCCACCAGCCCTGC...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGATGTGGAAGGGTCAGTaGTTGGGAGTGTGGAGGTGC +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGMWKGQ*LGVWRC
Trigger: GCACCTCCACACTCCCAACCACTGACCCTTCCACAT...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGAGAGGGGGCCATAGCTaGGCAAGGAAAGGAGGAATG +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGRGGHS*ARKGGM
Trigger: CATTCCTCCTTTCCTTGCCCAGCTATGGCCCCCTCT...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCATCTTCCTGAACGGCTaGGACTACAGGAACGCATCA +
Preference number: 4 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATIFLNG*DYRNAS
Trigger: TGATGCGTTCCTGTAGTCCCAGCCGTTCAGGAAGAT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp AAAAATACTAGATTGGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCCGTCGGGTAGGGCGCTaGGAAGGACCGCGGCACCGC +
Preference number: 4 (lower is better)
Translates to: KNTRLEQLRVIRLPPFPLRRVGR*EGPRHR
Trigger: GCGGTGCCGCGGTCCTTCTCAGCGCCCTACCCGACG...GAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAGTATTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAATTGGGAGTGTGGAGGTaGAGAGGCCATGAAGGGGGA +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKLGVWR*RGHEGG
Trigger: TCCCCCTTCATGGCCTCTGCACCTCCACACTCCCAA...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCAGCCGCAGCGCCTGCTaGACGCGGTACTCCTGCCTC +
Preference number: 4 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLSRSAC*TRYSCL
Trigger: GAGGCAGGAGTACCGCGTGCAGCAGGCGCTGCGGCT...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000391916.7
CDS-3UTR GCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCCTGTTTACCAGTGACTaGCATGCACCAAGTCCAATG +
Preference number: 4 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATLFTSD*HAPSPM
Trigger: CATTGGACTTGGTGCATGGCAGTCACTGGTAAACAG...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACGCTCCCGGGGTGGTaGCTGCTCCACGCTGCGGCC +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKTLPGW*LLHAAA
Trigger: GGCCGCAGCGTGGAGCAGTCACCACCCCGGGAGCGT...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGTTCCAAGCTAGAAGCTaGACTGGGTCAAACAGGGCT +
Preference number: 4 (lower is better)
Translates to: GTAEGHQASPIPSHREWGFQARS*TGSNRA
Trigger: AGCCCTGTTTGACCCAGTTCAGCTTCTAGCTTGGAA...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAATCTGCAGGGACCACCTaGGTCAGACACAGAGTCTCT +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKSAGTT*VRHRVS
Trigger: AGAGACTCTGTGTCTGACTCAGGTGGTCCCTGCAGA...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCGCGCCCGGGATGTACTaGGCCTTCACCAAGCGGCCC +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPAPGMY*AFTKRP
Trigger: GGGCCGCTTGGTGAAGGCGCAGTACATCCCGGGCGC...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTGCCAGCCGCAGCGCCTaGTGCACGCGGTACTCCTGC +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIASRSA*CTRYSC
Trigger: GCAGGAGTACCGCGTGCAGCAGGCGCTGCGGCTGGC...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGCAGGGCTGGTGGGGTaGCCCCCGACGCGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKAGLVG*PPTRSN
Trigger: GTTGGAGCGCGTCGGGGGCCACCCCACCAGCCCTGC...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAACGCGGCCCAGCAGGCTaGTCTCAGACTGGGAGCGCG +
Preference number: 4 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQRGPAG*SQTGSA
Trigger: CGCGCTCCCAGTCTGAGACCAGCCTGCTGGGCCGCG...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp AAAAATACTAGATTGGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCCGCGGCCCAGCAGGCTaGTCTCAGACTGGGAGCGCG +
Preference number: 4 (lower is better)
Translates to: KNTRLEQLRVIRLPPFPLRGPAG*SQTGSA
Trigger: CGCGCTCCCAGTCTGAGACCAGCCTGCTGGGCCGCG...GAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAGTATTTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCCGTCGATCTCCGCAGTaGAGCGCCAGCGACGGCAGG +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPRRSPQ*SASDGR
Trigger: CCTGCCGTCGCTGGCGCTCCACTGCGGAGATCGACG...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTTTTTCACGAAGACTTTaGCGGGGCCTGCGGGCGCCC +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLFSRRL*RGLRAP
Trigger: GGGCGCCCGCAGGCCCCGCCAAAGTCTTCGTGAAAA...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAACATTCCTCTCGGTGGTaGTGGGGGAGCCTTTTCAAC +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKHSSRW*WGSLFN
Trigger: GTTGAAAAGGCTCCCCCACCACCACCGAGAGGAATG...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGAGGGAGTGGGGGTCATaGGATAGAAACCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGREWGS*DRNHLP
Trigger: AGGAAGATGGTTTCTATCTCATGACCCCCACTCCCT...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp AAAAATACTAGATTGGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCGCGCCCGGGATGTACTaGGCCTTCACCAAGCGGCCC +
Preference number: 4 (lower is better)
Translates to: KNTRLEQLRVIRLPPFPLAPGMY*AFTKRP
Trigger: GGGCCGCTTGGTGAAGGCGCAGTACATCCCGGGCGC...GAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAGTATTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAAGAAGGGGAACTGTCTTaGCCAAGGGCTTCCAAGCTA +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKEGELS*PRASKL
Trigger: TAGCTTGGAAGCCCTTGGGCAAGACAGTTCCCCTTC...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTAGCCGCAGCGCCTGCTaGACGCGGTACTCCTGCCTC +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLSRSAC*TRYSCL
Trigger: GAGGCAGGAGTACCGCGTGCAGCAGGCGCTGCGGCT...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTACTTGGGCCTCTCACTaGCATAGATGCCCCGGGGCT +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLTWASH*HRCPGA
Trigger: AGCCCCGGGGCATCTATGCCAGTGAGAGGCCCAAGT...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAACAAGGAAAGGAGGAATaGGAGGGCTCATCAGGAATG +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKQGKEE*EGSSGM
Trigger: CATTCCTGATGAGCCCTCTCATTCCTCCTTTCCTTG...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCACTTGTATGAATGAATaGCAGCAGTTCCTGTTTACC +
Preference number: 4 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATTCMNE*QQFLFT
Trigger: GGTAAACAGGAACTGCTGTCATTCATTCATACAAGT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTGATCTCCTGACCTCGTaGTCCTCCCGCCTCGGCCTC +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLDLLTS*SSRLGL
Trigger: GAGGCCGAGGCGGGAGGATCACGAGGTCAGGAGATC...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCTCTCACTGGCATAGATaGCCCGGGGCTCAGAGGGAC +
Preference number: 4 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLSHWHR*PGAQRD
Trigger: GTCCCTCTGAGCCCCGGGGCATCTATGCCAGTGAGA...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTTTGGGAGTGTGGAGGTaGAGAGGCCATGAAGGGGGA +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLLGVWR*RGHEGG
Trigger: TCCCCCTTCATGGCCTCTGCACCTCCACACTCCCAA...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCCTTCCCAGGGCACTCTaGAGGGACCACCTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLLPRAL*RDHLSQ
Trigger: CTGACTCAGGTGGTCCCTGCAGAGTGCCCTGGGAAG...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp ACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCCCCTCTTCTACCTCACTTGGGCCTCTCACTaGCATAGATGCCCCGGGGCT +
Preference number: 4 (lower is better)
Translates to: TGSGGHEIETIFLPLFYLTWASH*HRCPGA
Trigger: AGCCCCGGGGCATCTATGCCAGTGAGAGGCCCAAGT...GAGGTAGAAGAGGGGAAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAACCGGAGCGCTGGGACTaGCGTCTCCTAGGGACTTGG +
Preference number: 4 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQPERWD*RLLGTW
Trigger: CCAAGTCCCTAGGAGACGCCAGTCCCAGCGCTCCGG...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGGCTGGTCTCAGACTaGGAGCGCGAGGCCTTGCGG +
Preference number: 4 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQRLVSD*EREALR
Trigger: CCGCAAGGCCTCGCGCTCCCAGTCTGAGACCAGCCT...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp AGGGTGCCAAGGGGATATCTTAAGGGTCCAGGGACATGGAGGGGGCACTTTGTGTTCCAAGCTAGAAGCTaGACTGGGTCAAACAGGGCT +
Preference number: 4 (lower is better)
Translates to: RVPRGYLKGPGTWRGHFVFQARS*TGSNRA
Trigger: AGCCCTGTTTGACCCAGTTCAGCTTCTAGCTTGGAA...CACAAAGTGCCCCCTCCATGTCCCTGGACCCTTAAGATATCCCCTTGGCACCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCGGGGCACTTTGTGAATaGGAGGGGGCCATAGCTGGG +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPGALCE*EGAIAG
Trigger: CCCAGCTATGGCCCCCTCTCATTCACAAAGTGCCCC...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTGAACTCCAGACCTCGTaGTCTGCCCGTCTCGGCCTC +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIELQTS*SARLGL
Trigger: GAGGCCGAGACGGGCAGATCACGAGGTCTGGAGTTC...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTGCCACACTGGCCTCCTaGAAGCAGGCGCCAGTCACA +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIATLAS*KQAPVT
Trigger: TGTGACTGGCGCCTGCTTTCAGGAGGCCAGTGTGGC...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCTGCACGCGGTACTCCTaGCTCTCCCGGAGCCAATGT +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPCTRYS*LSRSQC
Trigger: ACATTGGCTCCGGGAGAGGCAGGAGTACCGCGTGCA...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000391916.7
CDS-3UTR CCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAGCGATTCTCCCTCGCTaGCGCTCGATTCGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQAILPR*RSIRSP
Trigger: GGGAGAGCGAATCGAGCGCCAGCGAGGGAGAATCGC...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTCAGTGGTTGGGAGTGTaGAGGTGCAGAGGCCATGAA +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLQWLGV*RCRGHE
Trigger: TTCATGGCCTCTGCACCTCCACACTCCCAACCACTG...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGGAAAACGATGGTCTTTaGAAGGTAGATGTGGAAGGG +
Preference number: 4 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGENDGL*KVDVEG
Trigger: CCCTTCCACATCTACCTTCCAAAGACCATCGTTTTC...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CCCCCATTCCCTCTCACAGGGAGTGGGGGTCATGAGATAGAAACCATCTTCCTTAGAGGGGGCCATAGCTaGGCAAGGAAAGGAGGAATG +
Preference number: 4 (lower is better)
Translates to: PPFPLTGSGGHEIETIFLRGGHS*ARKGGM
Trigger: CATTCCTCCTTTCCTTGCCCAGCTATGGCCCCCTCT...AAGGAAGATGGTTTCTATCTCATGACCCCCACTCCCTGTGAGAGGGAATGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCGGGGCACTTTGTGAATaGGAGGGGGCCATAGCTGGG +
Preference number: 4 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTGALCE*EGAIAG
Trigger: CCCAGCTATGGCCCCCTCTCATTCACAAAGTGCCCC...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAGGAGGGGGCACTTTGTaGATGAGAGGGGGCCATAGC +
Preference number: 4 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQGGGTL*MRGGHS
Trigger: GCTATGGCCCCCTCTCATTCACAAAGTGCCCCCTCC...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp AAGCTAGAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTAGGGAGTGGGGGTCATaGGATAGAAACCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: KLEAELGQTGLLPIPLGGREWGS*DRNHLP
Trigger: AGGAAGATGGTTTCTATCTCATGACCCCCACTCCCT...ACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTCTAGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTTCTCACTGGCATAGATaGCCCGGGGCTCAGAGGGAC +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLSHWHR*PGAQRD
Trigger: GTCCCTCTGAGCCCCGGGGCATCTATGCCAGTGAGA...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGCCGAATTACCCCTTTTaGATACATGGACACTTACTG +
Preference number: 4 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGPNYPF*IHGHLL
Trigger: CAGTAAGTGTCCATGTATGCAAAAGGGGTAATTCGG...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTTGCACGCGGTACTCCTaGCTCTCCCGGAGCCAATGT +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLCTRYS*LSRSQC
Trigger: ACATTGGCTCCGGGAGAGGCAGGAGTACCGCGTGCA...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTCATTCTCCTCCTGAGTaGCTGGGACTACAGGCGCCC +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLHSPPE*LGLQAP
Trigger: GGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATG...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGAGGTGCAGAGGCCATaGAGGGGGAGCCCAAGCAAA +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKEVQRP*RGSPSK
Trigger: TTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTC...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGGAGGGGGCACTTTGTaGATGAGAGGGGGCCATAGC +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKGGGTL*MRGGHS
Trigger: GCTATGGCCCCCTCTCATTCACAAAGTGCCCCCTCC...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAACAGACACAGAGTCTCTaGCCAGGGTGCCAAGGGGAT +
Preference number: 4 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQQTQSL*PGCQGD
Trigger: ATCCCCTTGGCACCCTGGTCAGAGACTCTGTGTCTG...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAACTTCCCAGGGCACTCTaGAGGGACCACCTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKLPRAL*RDHLSQ
Trigger: CTGACTCAGGTGGTCCCTGCAGAGTGCCCTGGGAAG...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTGCCCACCTCCCAAAGTaGTGGGATTACAGGCGTGAG +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLAHLPK*WDYRRE
Trigger: CTCACGCCTGTAATCCCAGCACTTTGGGAGGTGGGC...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCGGCGACCATAGGAGCTaGATCCAGAGAAGCCACTGT +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPGDHRS*IQRSHC
Trigger: ACAGTGGCTTCTCTGGATCCAGCTCCTATGGTCGCC...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCTCCTCTCGGTGGTGGTaGGGGAGCCTTTTCAACCAA +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPSSRWW*GSLFNQ
Trigger: TTGGTTGAAAAGGCTCCCCCACCACCACCGAGAGGA...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCCATTCCTCTCGGTGGTaGTGGGGGAGCCTTTTCAAC +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPHSSRW*WGSLFN
Trigger: GTTGAAAAGGCTCCCCCACCACCACCGAGAGGAATG...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTGCAGTTTCCAGCTCCTaGGCTCAAGGGATCCTCTCG +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLAVSSS*AQGILS
Trigger: CGAGAGGATCCCTTGAGCCCAGGAGCTGGAAACTGC...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTTTCTGTCGCCCAGGCTaGAGTGCAGTAGCCCGATCT +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLFCRPG*SAVARS
Trigger: AGATCGGGCTACTGCACTCCAGCCTGGGCGACAGAA...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp AAAAATACTAGATTGGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCCTAGATTGGAACAGCTaGGGGTCATCAGGCTTCCCC +
Preference number: 4 (lower is better)
Translates to: KNTRLEQLRVIRLPPFPLLDWNS*GSSGFP
Trigger: GGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAG...GAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAGTATTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTACTCCTGATCTCAGGTaGTCCACCTGCTTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHITPDLR*STCFGL
Trigger: GAGGCCAAAGCAGGTGGATCACCTGAGATCAGGAGT...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGCGCAGCGGGCTCGGGTaGCGCCTCCGACTCCCACGA +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWRSGLG*RLRLPR
Trigger: TCGTGGGAGTCGGAGGCGGCACCCGAGCCCGCTGCG...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CCACATATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGACCTCGGGTGGCCGCCTaGGCGCCCGGGATGTACTGC +
Preference number: 4 (lower is better)
Translates to: PHMLHCAFIYKEVRETHRPRVAA*APGMYC
Trigger: GCAGTACATCCCGGGCGCGCAGGCGGCCACCCGAGG...TCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACATATGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000391916.7
CDS-3UTR GCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGTCCCGGGGTGGTGACTaGTCCACGCTGCGGCCGCGG +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWSRGGD*STLRPR
Trigger: CCGCGGCCGCAGCGTGGAGCAGTCACCACCCCGGGA...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp AGGGTGCCAAGGGGATATCTTAAGGGTCCAGGGACATGGAGGGGGCACTTTGTGCCGAATTACCCCTTTTaGATACATGGACACTTACTG +
Preference number: 4 (lower is better)
Translates to: RVPRGYLKGPGTWRGHFVPNYPF*IHGHLL
Trigger: CAGTAAGTGTCCATGTATGCAAAAGGGGTAATTCGG...CACAAAGTGCCCCCTCCATGTCCCTGGACCCTTAAGATATCCCCTTGGCACCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGTCACCCTGGCTAGAGTaGAGTGGCTCCATCTTGGCT +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKSPWLE*SGSILA
Trigger: AGCCAAGATGGAGCCACTGCACTCTAGCCAGGGTGA...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGGGCGACCATAGGAGCTaGATCCAGAGAAGCCACTGT +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKGDHRS*IQRSHC
Trigger: ACAGTGGCTTCTCTGGATCCAGCTCCTATGGTCGCC...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp CGAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAACGTCTCCTAGGGACTTaGGCCTCTCACTGGCATAGA +
Preference number: 4 (lower is better)
Translates to: RSERVLLSRCYQPLLDPQRLLGT*ASHWHR
Trigger: TCTATGCCAGTGAGAGGCCCAAGTCCCTAGGAGACG...TTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp AAAAATACTAGATTGGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCCGTCTCCTAGGGACTTaGGCCTCTCACTGGCATAGA +
Preference number: 4 (lower is better)
Translates to: KNTRLEQLRVIRLPPFPLRLLGT*ASHWHR
Trigger: TCTATGCCAGTGAGAGGCCCAAGTCCCTAGGAGACG...GAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAGTATTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGTCAAGGCGGCAGGGCTaGTGGGGTGGCCCCCGACGC +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWSRRQG*WGGPRR
Trigger: GCGTCGGGGGCCACCCCACCAGCCCTGCCGCCTTGA...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCAGTGGTTGGGAGTGTaGAGGTGCAGAGGCCATGAA +
Preference number: 4 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTQWLGV*RCRGHE
Trigger: TTCATGGCCTCTGCACCTCCACACTCCCAACCACTG...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCATGTGGAAGGGTCAGTaGTTGGGAGTGTGGAGGTGC +
Preference number: 4 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTMWKGQ*LGVWRC
Trigger: GCACCTCCACACTCCCAACCACTGACCCTTCCACAT...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp GAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCCCGTCCAGGGATCGAAGTaGAAGAGTCCTTCTTTCCAG +
Preference number: 4 (lower is better)
Translates to: ERVLLSRCYQPLLDPQNPVQGSK*KSPSFQ
Trigger: CTGGAAAGAAGGACTCTTTCACTTCGATCCCTGGAC...GGGGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp TGGGAGTGTGGAGGTGCAGAGGCCATGAAGGGGGAGCCCAAGCAAATCCCCAAACATTTAATCATTCAGTaGGAGTCCACCACATATGTT +
Preference number: 4 (lower is better)
Translates to: WECGGAEAMKGEPKQIPKHLIIQ*ESTTYV
Trigger: AACATATGTGGTGGACTCTCACTGAATGATTAAATG...TTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000391916.7
CDS-3UTR TCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTGTTCCTGTTTACCAGTaGCTGCCATGCACCAAGTCC +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIVPVYQ*LPCTKS
Trigger: GGACTTGGTGCATGGCAGTCACTGGTAAACAGGAAC...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTACAGGCATGAACCACTaGGCTGACCCTTCTCCTCTA +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHITGMNH*ADPSPL
Trigger: TAGAGGAGAAGGGTCAGCTCAGTGGTTCATGCCTGT...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGCGCATCGCCACGGCGTaGAGGGGGCTGGGCGTCAGA +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWRIATA*RGLGVR
Trigger: TCTGACGCCCAGCCCCCTGCACGCCGTGGCGATGCG...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CCACATATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGACGCATCGCCACGGCGTaGAGGGGGCTGGGCGTCAGA +
Preference number: 4 (lower is better)
Translates to: PHMLHCAFIYKEVRETHRRIATA*RGLGVR
Trigger: TCTGACGCCCAGCCCCCTGCACGCCGTGGCGATGCG...TCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACATATGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000391916.7
CDS-3UTR GCA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCGAAGGGGAACTGTCTTaGCCAAGGGCTTCCAAGCTA +
Preference number: 4 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTEGELS*PRASKL
Trigger: TAGCTTGGAAGCCCTTGGGCAAGACAGTTCCCCTTC...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGAGGCATGCACCACAATaGCTGGCTATTGAGGCACTG +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKRHAPQ*LAIEAL
Trigger: CAGTGCCTCAATAGCCAGGCATTGTGGTGCATGCCT...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTAGACAGGTTCTTGCTTaGTCTGTCACCCAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIRQVLA*SVTQAG
Trigger: TCCAGCCTGGGTGACAGAGCAAGCAAGAACCTGTCT...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGGCGACCATAGGAGCTaGATCCAGAGAAGCCACTGT +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKGDHRS*IQRSHC
Trigger: ACAGTGGCTTCTCTGGATCCAGCTCCTATGGTCGCC...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGCCTTACCTAGGGACTTaGGCCTCTCACTGGCATAGA +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKPYLGT*ASHWHR
Trigger: TCTATGCCAGTGAGAGGCCCAAGTCCCTAGGTAAGG...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGTGTCACAGCTGGAATTaGAATCCAGGCCCGATTCGG +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKCHSWN*NPGPIR
Trigger: CCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACA...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp AAAAATACTAGATTGGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCGCGCGTGGGAAGCTTTaGTTTTCACGAAGACTTTGG +
Preference number: 4 (lower is better)
Translates to: KNTRLEQLRVIRLPPFPLARGKL*FSRRLW
Trigger: CCAAAGTCTTCGTGAAAATCAAAGCTTCCCACGCGC...GAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAGTATTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTATGTTACAGTCTCAGTaGAGCCCTCCCCAGCCATAT +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIMLQSQ*SPPQPY
Trigger: ATATGGCTGGGGAGGGCTTCACTGAGACTGTAACAT...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTATGCACCAAGTCCAATaGCTTAGAGCAGAGGCTCAC +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLMHQVQ*LRAEAH
Trigger: GTGAGCCTCTGCTCTAAGGCATTGGACTTGGTGCAT...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTATGATCTCAGCTCACTaGAATCTCTGCCACCCAGGT +
Preference number: 4 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLMISAH*NLCHPG
Trigger: ACCTGGGTGGCAGAGATTGCAGTGAGCTGAGATCAT...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp AAGCTAGAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTAAGCAGAGAAAACGATaGTCTTTGGAAGGTAGATGT +
Preference number: 4 (lower is better)
Translates to: KLEAELGQTGLLPIPLGGKQRKR*SLEGRC
Trigger: ACATCTACCTTCCAAAGACCATCGTTTTCTCTGCTT...ACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTCTAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGAGGAAATGTCACAGCTaGAATTGGAATCCAGGCCCG +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKRKCHS*NWNPGP
Trigger: CGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCT...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGCGCGTGGGAAGCTTTaGTTTTCACGAAGACTTTGG +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKARGKL*FSRRLW
Trigger: CCAAAGTCTTCGTGAAAATCAAAGCTTCCCACGCGC...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAACAAGGAAAGGAGGAATaGGAGGGCTCATCAGGAATG +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKQGKEE*EGSSGM
Trigger: CATTCCTGATGAGCCCTCTCATTCCTCCTTTCCTTG...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGCATGAACCACTGAGCTaGCCCTTCTCCTCTACTTAT +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKHEPLS*PFSSTY
Trigger: ATAAGTAGAGGAGAAGGGTCAGCTCAGTGGTTCATG...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGACACGAGGCCACCGCTaGCGTCTGAGTCGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWTRGHR*RLSRWR
Trigger: CCTCCAGCGACTCAGACGGCAGCGGTGGCCTCGTGT...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR GCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGTTTAAGACAGGTTCTTaGTTGCTCTGTCACCCAGGC +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKFKTGS*LLCHPG
Trigger: GCCTGGGTGACAGAGCAAGCAAGAACCTGTCTTAAA...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGTTTTCACGAAGACTTTaGCGGGGCCTGCGGGCGCCC +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWFSRRL*RGLRAP
Trigger: GGGCGCCCGCAGGCCCCGCCAAAGTCTTCGTGAAAA...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTATGCACCACAATGCCTaGCTATTGAGGCACTGTTAT +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIMHHNA*LLRHCY
Trigger: ATAACAGTGCCTCAATAGCCAGGCATTGTGGTGCAT...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR TCA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTCTGCTCATAACCATGTaGAAAGGAAATGTCACAGCT +
Preference number: 4 (lower is better)
Translates to: FRAQLKCYSLSEALPSHILLITM*KGNVTA
Trigger: AGCTGTGACATTTCCTTTTCACATGGTTATGAGCAG...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR GCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGGTTCATTTTGTTCATTaGTCCTGGGATACTGCTAGG +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKVHFVH*SWDTAR
Trigger: CCTAGCAGTATCCCAGGAGCAATGAACAAAATGAAC...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAGAAAACGATGGTCTTTaGAAGGTAGATGTGGAAGGG +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKENDGL*KVDVEG
Trigger: CCCTTCCACATCTACCTTCCAAAGACCATCGTTTTC...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAATTTTTCTTGAGCGCGTaGGAAGCTTTGATTTTCACG +
Preference number: 4 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKFFLSA*EALIFT
Trigger: CGTGAAAATCAAAGCTTCCCACGCGCTCAAGAAAAA...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp AAAAATACTAGATTGGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCAAGCAGAGAAAACGATaGTCTTTGGAAGGTAGATGT +
Preference number: 4 (lower is better)
Translates to: KNTRLEQLRVIRLPPFPLKQRKR*SLEGRC
Trigger: ACATCTACCTTCCAAAGACCATCGTTTTCTCTGCTT...GAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCCAATCTAGTATTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR TCA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGACTTACTTGTATGAATaGATGACAGCAGTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKTYLYE*MTAVPV
Trigger: AACAGGAACTGCTGTCATTCATTCATACAAGTAAGT...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGTCCTCTCGGTGGTGGTaGGGGAGCCTTTTCAACCAA +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWSSRWW*GSLFNQ
Trigger: TTGGTTGAAAAGGCTCCCCCACCACCACCGAGAGGA...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGAAGGGTCCAGGGACATaGAGGGGGCACTTTGTGAAT +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWKGPGT*RGHFVN
Trigger: ATTCACAAAGTGCCCCCTCCATGTCCCTGGACCCTT...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CCA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGTTTTTCTTGAGCGCGTaGGAAGCTTTGATTTTCACG +
Preference number: 4 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWFFLSA*EALIFT
Trigger: CGTGAAAATCAAAGCTTCCCACGCGCTCAAGAAAAA...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 90 bp CCGCGTCGGGCGAGTCGGTGGGAGGGCGGCCGCAGGGCCGCGGGCTaGGCATCGCCACGGCGTGCAGGGGGCTGGGCGTCAGAAAGGGCC +
Preference number: 5 (lower is better)
Translates to: PRRASRWEGGRRAAG*ASPRRAGGWASERA
Trigger: GGCCCTTTCTGACGCCCAGCCCCCTGCACGCCGTGGCGATGCGCAGCCCGCGGCCCTGCGGCCGCCCTCCCACCGACTCGCCCGACGCGG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 90 bp GGCAGCGTCGATCTCCGCAGTGGAGCGCCAGCGACGGCAGGACCCTaGGGCCTGGGCCGCCAGCGTGGGCGCTGGGCCGCGGCGTGGCCG +
Preference number: 5 (lower is better)
Translates to: GSVDLRSGAPATAGP*GLGRQRGRWAAAWP
Trigger: CGGCCACGCCGCGGCCCAGCGCCCACGCTGGCGGCCCAGGCCGCAGGGTCCTGCCGTCGCTGGCGCTCCACTGCGGAGATCGACGCTGCC
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 90 bp CACGACGACGCCCAGGCGCGGCTCAAGGCGGCAGGGCTGGTGGGGTaGCCCCCGACGCGCTCCAACGAGGGCTCCCGCGCGGGTCGCGCG +
Preference number: 5 (lower is better)
Translates to: HDDAQARLKAAGLVG*PPTRSNEGSRAGRA
Trigger: CGCGCGACCCGCGCGGGAGCCCTCGTTGGAGCGCGTCGGGGGCCACCCCACCAGCCCTGCCGCCTTGAGCCGCGCCTGGGCGTCGTCGTG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 90 bp CCGACTCCCACGACGACGCCCAGGCGCGGCTCAAGGCGGCAGGGCTaGTGGGGTGGCCCCCGACGCGCTCCAACGAGGGCTCCCGCGCGG +
Preference number: 5 (lower is better)
Translates to: PTPTTTPRRGSRRQG*WGGPRRAPTRAPAR
Trigger: CCGCGCGGGAGCCCTCGTTGGAGCGCGTCGGGGGCCACCCCACCAGCCCTGCCGCCTTGAGCCGCGCCTGGGCGTCGTCGTGGGAGTCGG
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 90 bp GTGGCGGCGGTTTGCGGCGGGCGGCGCGGCCAGGGAGGCCTCGGGTaGCCGCCTGCGCGCCCGGGATGTACTGCGCCTTCACCAAGCGGC +
Preference number: 5 (lower is better)
Translates to: VAAVCGGRRGQGGLG*PPARPGCTAPSPSG
Trigger: GCCGCTTGGTGAAGGCGCAGTACATCCCGGGCGCGCAGGCGGCCACCCGAGGCCTCCCTGGCCGCGCCGCCCGCCGCAAACCGCCGCCAC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 90 bp TGCGGCCTGGGCCGCCAGCGTGGGCGCTGGGCCGCGGCGTGGCCGTaGAGGCCGAGGCTCTTCCCGCTCCGCCGTGGGGTACTTAGGGGG +
Preference number: 5 (lower is better)
Translates to: CGLGRQRGRWAAAWP*RPRLFPLRRGVLRG
Trigger: CCCCCTAAGTACCCCACGGCGGAGCGGGAAGAGCCTCGGCCTCCACGGCCACGCCGCGGCCCAGCGCCCACGCTGGCGGCCCAGGCCGCA
79% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 90 bp ACTCCCACGACGACGCCCAGGCGCGGCTCAAGGCGGCAGGGCTGGTaGGGTGGCCCCCGACGCGCTCCAACGAGGGCTCCCGCGCGGGTC +
Preference number: 5 (lower is better)
Translates to: TPTTTPRRGSRRQGW*GGPRRAPTRAPARV
Trigger: GACCCGCGCGGGAGCCCTCGTTGGAGCGCGTCGGGGGCCACCCCACCAGCCCTGCCGCCTTGAGCCGCGCCTGGGCGTCGTCGTGGGAGT
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 90 bp CCAGCAGGCTGGTCTCAGACTGGGAGCGCGAGGCCTTGCGGGCCCTaGGCGAGCCGCGGCGGCCCGAAGCCTCGGCCATGCGTCCACGGC +
Preference number: 5 (lower is better)
Translates to: PAGWSQTGSARPCGP*ASRGGPKPRPCVHG
Trigger: GCCGTGGACGCATGGCCGAGGCTTCGGGCCGCCGCGGCTCGCCCAGGGCCCGCAAGGCCTCGCGCTCCCAGTCTGAGACCAGCCTGCTGG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 90 bp GCACCTGCTCCACCCCCAGAGGCCGCGGTGGCCGCCACCAGCTGCTaGGGCCACACGAGGCCACCGCTGCCGTCTGAGTCGCTGGAGGCA +
Preference number: 5 (lower is better)
Translates to: APAPPPEAAVAATSC*GHTRPPLPSESLEA
Trigger: TGCCTCCAGCGACTCAGACGGCAGCGGTGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGCCACCGCGGCCTCTGGGGGTGGAGCAGGTGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 90 bp CCTGCACCTGCTCCACCCCCAGAGGCCGCGGTGGCCGCCACCAGCTaGTGCGGCCACACGAGGCCACCGCTGCCGTCTGAGTCGCTGGAG +
Preference number: 5 (lower is better)
Translates to: PAPAPPPEAAVAATS*CGHTRPPLPSESLE
Trigger: CTCCAGCGACTCAGACGGCAGCGGTGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGCCACCGCGGCCTCTGGGGGTGGAGCAGGTGCAGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS TCA 90 bp GGCCGCCACCAGCTGCTGCGGCCACACGAGGCCACCGCTGCCGTCTaGGTCGCTGGAGGCAGAGCTGAAGGCAGGCGATTCTCCCTCGCT +
Preference number: 5 (lower is better)
Translates to: GRHQLLRPHEATAAV*VAGGRAEGRRFSLA
Trigger: AGCGAGGGAGAATCGCCTGCCTTCAGCTCTGCCTCCAGCGACTCAGACGGCAGCGGTGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 90 bp ATTCCGGGCTGGGCCAGCCGCAGCGCCTGCTGCACGCGGTACTCCTaGCTCTCCCGGAGCCAATGTAACTCGCAGAGCCCGGCCAGGCTA +
Preference number: 5 (lower is better)
Translates to: IPGWASRSACCTRYS*LSRSQCNSQSPARL
Trigger: TAGCCTGGCCGGGCTCTGCGAGTTACATTGGCTCCGGGAGAGGCAGGAGTACCGCGTGCAGCAGGCGCTGCGGCTGGCCCAGCCCGGAAT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391916.7
ENST00000410105.2
CDS TCA 90 bp GCCACACGAGGCCACCGCTGCCGTCTGAGTCGCTGGAGGCAGAGCTaGAGGCAGGCGATTCTCCCTCGCTGGCGCTCGATTCGCTCTCCC +
Preference number: 5 (lower is better)
Translates to: ATRGHRCRLSRWRQS*RQAILPRWRSIRSP
Trigger: GGGAGAGCGAATCGAGCGCCAGCGAGGGAGAATCGCCTGCCTTCAGCTCTGCCTCCAGCGACTCAGACGGCAGCGGTGGCCTCGTGTGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 90 bp TGGGACTGGCGTCTCCTAGGGACTTGGGCCTCTCACTGGCATAGATaGCCCGGGGCTCAGAGGGACCCAGGCGACCATAGGAGCTGGATC +
Preference number: 5 (lower is better)
Translates to: WDWRLLGTWASHWHR*PGAQRDPGDHRSWI
Trigger: GATCCAGCTCCTATGGTCGCCTGGGTCCCTCTGAGCCCCGGGGCATCTATGCCAGTGAGAGGCCCAAGTCCCTAGGAGACGCCAGTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 90 bp CCTCACCCACCTTACCTAGGGACTTGGGCCTCTCACTGGCATAGATaGCCCGGGGCTCAGAGGGACCCAGGCGACCATAGGAGCTGGATC +
Preference number: 5 (lower is better)
Translates to: PHPPYLGTWASHWHR*PGAQRDPGDHRSWI
Trigger: GATCCAGCTCCTATGGTCGCCTGGGTCCCTCTGAGCCCCGGGGCATCTATGCCAGTGAGAGGCCCAAGTCCCTAGGTAAGGTGGGTGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CAA 90 bp CCGGGTTCATGCCATTCTCCTCCTGAGTGGCTGGGACTACAGGCGCCCGCCACCAAGACAGGTTCTTGCTaGCTCTGTCACCCAGGCTGG +
Preference number: 5 (lower is better)
Translates to: PGSCHSPPEWLGLQAPATKTGSC*LCHPGW
Trigger: CCAGCCTGGGTGACAGAGCAAGCAAGAACCTGTCTT...GGTGGCGGGCGCCTGTAGTCCCAGCCACTCAGGAGGAGAATGGCATGAACCCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS GCA 90 bp AATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGTCTGTaGCCACAACCATCCTCCTACTGTCCTTTCCCTGGCCCCAGGGCC +
Preference number: 5 (lower is better)
Translates to: NVTAGIGIQARFGSL*PQPSSYCPFPGPRA
Trigger: GGCCCTGGGGCCAGGGAAAGGACAGTAGGAGGATGGTTGTGGGCACAGACTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CAA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGCGCAGTATCTTTTTCTaGAGCGCGTGGGAAGCTTTG +
Preference number: 5 (lower is better)
Translates to: GTAEGHQASPIPSHREWGRSIFF*SAWEAL
Trigger: CAAAGCTTCCCACGCGCTCAAGAAAAAGATACTGCG...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS TCA 90 bp GATGTGGAAGGGTCAGTGGTTGGGAGTGTGGAGGTGCAGAGGCCATaGAGGGGGAGCCCAAGCAAATCCCCAAACTCACACTGTAGTCAT +
Preference number: 5 (lower is better)
Translates to: DVEGSVVGSVEVQRP*RGSPSKSPNSHCSH
Trigger: ATGACTACAGTGTGAGTTTGGGGATTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCTCCACACTCCCAACCACTGACCCTTCCACATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGAGCGCGTGGGAAGCTTaGATTTTCACGAAGACTTTG +
Preference number: 5 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGSAWEA*IFTKTL
Trigger: CAAAGTCTTCGTGAAAATCAAAGCTTCCCACGCGCT...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp GAAGCTGAACTGGGTCAAACAGGGCTCCTCCCCATTCCTCTCGGTGGTGGTGGGACTGTAGTCATGACCTaGAGAGAACCCGAACGGAAA +
Preference number: 5 (lower is better)
Translates to: EAELGQTGLLPIPLGGGGTVVMT*REPERK
Trigger: TTTCCGTTCGGGTTCTCTCAAGGTCATGACTACAGT...CCCACCACCACCGAGAGGAATGGGGAGGAGCCCTGTTTGACCCAGTTCAGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCATTTTCACGAAGACTTaGGCGGGGCCTGCGGGCGCC +
Preference number: 5 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTIFTKT*AGPAGA
Trigger: GGCGCCCGCAGGCCCCGCCAAAGTCTTCGTGAAAAT...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp GGAACAGCTGAGGGTCATCAGGCTTCCCCCATTCCCTCTCACAGGGAGTGGGGGACCGAATTACCCCTTTaGCATACATGGACACTTACT +
Preference number: 5 (lower is better)
Translates to: GTAEGHQASPIPSHREWGTELPL*HTWTLT
Trigger: AGTAAGTGTCCATGTATGCAAAAGGGGTAATTCGGT...CCCCCACTCCCTGTGAGAGGGAATGGGGGAAGCCTGATGACCCTCAGCTGTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp CATGTGAAAAGGAAATGTCACAGCTGGAATTGGAATCCAGGCCCGATTCGGAAGTGGGGTCTCACTGTGTaGCCCAGTCTAGTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: HVKRKCHSWNWNPGPIRKWGLTV*PSLVSS
Trigger: GCTGGAGACTAGACTGGGCAACACAGTGAGACCCCA...CTTCCGAATCGGGCCTGGATTCCAATTCCAGCTGTGACATTTCCTTTTCACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CAA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCAGCGCGTGGGAAGCTTaGATTTTCACGAAGACTTTG +
Preference number: 5 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTSAWEA*IFTKTL
Trigger: CAAAGTCTTCGTGAAAATCAAAGCTTCCCACGCGCT...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTCCTGAGGGCAGGGATTaGCCTGTTTTGTTCATTACT +
Preference number: 5 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLPEGRD*PVLFIT
Trigger: AGTAATGAACAAAACAGGCAAATCCCTGCCCTCAGG...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CAA 90 bp ATGTTACACTGTGCATTTATTTACAAAGAGGTTAGAGAAACACACAGAATCTGGATTTTCACGAAGACTTaGGCGGGGCCTGCGGGCGCC +
Preference number: 5 (lower is better)
Translates to: MLHCAFIYKEVRETHRIWIFTKT*AGPAGA
Trigger: GGCGCCCGCAGGCCCCGCCAAAGTCTTCGTGAAAAT...CCAGATTCTGTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp GAAGTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACTGTAGTCATGACCTaGAGAGAACCCGAACGGAAA +
Preference number: 5 (lower is better)
Translates to: EVKESFFPGVTNPYLTLKTVVMT*REPERK
Trigger: TTTCCGTTCGGGTTCTCTCAAGGTCATGACTACAGT...TTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp TTCAGGGCACAACTCAAATGTTACAGTCTCAGTGAAGCCCTCCCCAGCCATATTCACAATGCCTGGCTATaGAGGCACTGTTATTATACC +
Preference number: 5 (lower is better)
Translates to: FRAQLKCYSLSEALPSHIHNAWL*RHCYYT
Trigger: GGTATAATAACAGTGCCTCAATAGCCAGGCATTGTG...AATATGGCTGGGGAGGGCTTCACTGAGACTGTAACATTTGAGTTGTGCCCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS-3UTR CAA 90 bp GTGAAAGAGTCCTTCTTTCCAGGTGTTACCAACCCCTACTTGACCCTCAAAACCACCGAATTACCCCTTTaGCATACATGGACACTTACT +
Preference number: 5 (lower is better)
Translates to: VKESFFPGVTNPYLTLKTTELPL*HTWTLT
Trigger: AGTAAGTGTCCATGTATGCAAAAGGGGTAATTCGGT...GGTTTTGAGGGTCAAGTAGGGGTTGGTAACACCTGGAAAGAAGGACTCTTTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS-3UTR CAA 90 bp AATGACAGCAGTTCCTGTTTACCAGTGACTGCCATGCACCAAGTCCAATGCCTTTCATTACTGTTCATTTaGTTCATTGCTCCTGGGATA +
Preference number: 5 (lower is better)
Translates to: NDSSSCLPVTAMHQVQCLSLLFI*FIAPGI
Trigger: TATCCCAGGAGCAATGAACAAAATGAACAGTAATGA...AAGGCATTGGACTTGGTGCATGGCAGTCACTGGTAAACAGGAACTGCTGTCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS CAA 90 bp GGTGGTGACTGCTCCACGCTGCGGCCGCGGGTCAGTGGCGGCGGTTaGCGGCGGGCGGCGCGGCCAGGGAGGCCTCGGGTGGCCGCCTGC +
Preference number: 6 (lower is better)
Translates to: GGDCSTLRPRVSGGG*RRAARPGRPRVAAC
Trigger: GCAGGCGGCCACCCGAGGCCTCCCTGGCCGCGCCGCCCGCCGCAAACCGCCGCCACTGACCCGCGGCCGCAGCGTGGAGCAGTCACCACC
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 72 bp CCCGGGGACGCTCCCGGGGTGGTGACTGCTCCACGCTaGGGCCGCGGGTCAGTGGCGGCGGTTTGCGGCGGG +
Preference number: 6 (lower is better)
Translates to: PGDAPGVVTAPR*GRGSVAAVCGG
Trigger: CCCGCCGCAAACCGCCGCCACTGACCCGCGGCCGCAGCGTGGAGCAGTCACCACCCCGGGAGCGTCCCCGGG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 72 bp ACGACGCCCAGGCGCGGCTCAAGGCGGCAGGGCTGGTaGGGTGGCCCCCGACGCGCTCCAACGAGGGCTCCC +
Preference number: 6 (lower is better)
Translates to: TTPRRGSRRQGW*GGPRRAPTRAP
Trigger: GGGAGCCCTCGTTGGAGCGCGTCGGGGGCCACCCCACCAGCCCTGCCGCCTTGAGCCGCGCCTGGGCGTCGT
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CAA 72 bp CCCAGCAGGCTGGTCTCAGACTGGGAGCGCGAGGCCTaGCGGGCCCTGGGCGAGCCGCGGCGGCCCGAAGCC +
Preference number: 6 (lower is better)
Translates to: PSRLVSDWEREA*RALGEPRRPEA
Trigger: GGCTTCGGGCCGCCGCGGCTCGCCCAGGGCCCGCAAGGCCTCGCGCTCCCAGTCTGAGACCAGCCTGCTGGG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 72 bp CCACCCCCAGAGGCCGCGGTGGCCGCCACCAGCTGCTaGGGCCACACGAGGCCACCGCTGCCGTCTGAGTCG +
Preference number: 6 (lower is better)
Translates to: PPPEAAVAATSC*GHTRPPLPSES
Trigger: CGACTCAGACGGCAGCGGTGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGCCACCGCGGCCTCTGGGGGTGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 72 bp GCTCCACCCCCAGAGGCCGCGGTGGCCGCCACCAGCTaGTGCGGCCACACGAGGCCACCGCTGCCGTCTGAG +
Preference number: 6 (lower is better)
Translates to: APPPEAAVAATS*CGHTRPPLPSE
Trigger: CTCAGACGGCAGCGGTGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGCCACCGCGGCCTCTGGGGGTGGAGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 72 bp ACGACGACGCCCAGGCGCGGCTCAAGGCGGCAGGGCTaGTGGGGTGGCCCCCGACGCGCTCCAACGAGGGCT +
Preference number: 6 (lower is better)
Translates to: TTTPRRGSRRQG*WGGPRRAPTRA
Trigger: AGCCCTCGTTGGAGCGCGTCGGGGGCCACCCCACCAGCCCTGCCGCCTTGAGCCGCGCCTGGGCGTCGTCGT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 72 bp TGGTCTCAGACTGGGAGCGCGAGGCCTTGCGGGCCCTaGGCGAGCCGCGGCGGCCCGAAGCCTCGGCCATGC +
Preference number: 6 (lower is better)
Translates to: WSQTGSARPCGP*ASRGGPKPRPC
Trigger: GCATGGCCGAGGCTTCGGGCCGCCGCGGCTCGCCCAGGGCCCGCAAGGCCTCGCGCTCCCAGTCTGAGACCA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CCA 72 bp GCACGCGGCGCCCATCGGCAGCGTCGATCTCCGCAGTaGAGCGCCAGCGACGGCAGGACCCTGCGGCCTGGG +
Preference number: 6 (lower is better)
Translates to: ARGAHRQRRSPQ*SASDGRTLRPG
Trigger: CCCAGGCCGCAGGGTCCTGCCGTCGCTGGCGCTCCACTGCGGAGATCGACGCTGCCGATGGGCGCCGCGTGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 72 bp AGGCCTCGGGTGGCCGCCTGCGCGCCCGGGATGTACTaGGCCTTCACCAAGCGGCCCTCAGCCGGGCTGTCG +
Preference number: 6 (lower is better)
Translates to: RPRVAACAPGMY*AFTKRPSAGLS
Trigger: CGACAGCCCGGCTGAGGGCCGCTTGGTGAAGGCGCAGTACATCCCGGGCGCGCAGGCGGCCACCCGAGGCCT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 72 bp TGGGCCAGCCGCAGCGCCTGCTGCACGCGGTACTCCTaGCTCTCCCGGAGCCAATGTAACTCGCAGAGCCCG +
Preference number: 6 (lower is better)
Translates to: WASRSACCTRYS*LSRSQCNSQSP
Trigger: CGGGCTCTGCGAGTTACATTGGCTCCGGGAGAGGCAGGAGTACCGCGTGCAGCAGGCGCTGCGGCTGGCCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391916.7
ENST00000410105.2
CDS TCA 72 bp CAGCTGCTGCGGCCACACGAGGCCACCGCTGCCGTCTaGGTCGCTGGAGGCAGAGCTGAAGGCAGGCGATTC +
Preference number: 6 (lower is better)
Translates to: QLLRPHEATAAV*VAGGRAEGRRF
Trigger: GAATCGCCTGCCTTCAGCTCTGCCTCCAGCGACTCAGACGGCAGCGGTGGCCTCGTGTGGCCGCAGCAGCTG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 72 bp CGTCTCCTAGGGACTTGGGCCTCTCACTGGCATAGATaGCCCGGGGCTCAGAGGGACCCAGGCGACCATAGG +
Preference number: 6 (lower is better)
Translates to: RLLGTWASHWHR*PGAQRDPGDHR
Trigger: CCTATGGTCGCCTGGGTCCCTCTGAGCCCCGGGGCATCTATGCCAGTGAGAGGCCCAAGTCCCTAGGAGACG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS GCA 72 bp CCTTACCTAGGGACTTGGGCCTCTCACTGGCATAGATaGCCCGGGGCTCAGAGGGACCCAGGCGACCATAGG +
Preference number: 6 (lower is better)
Translates to: PYLGTWASHWHR*PGAQRDPGDHR
Trigger: CCTATGGTCGCCTGGGTCCCTCTGAGCCCCGGGGCATCTATGCCAGTGAGAGGCCCAAGTCCCTAGGTAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS GCA 72 bp GCTGGAATTGGAATCCAGGCCCGATTCGGAAGTCTGTaGCCACAACCATCCTCCTACTGTCCTTTCCCTGGC +
Preference number: 6 (lower is better)
Translates to: AGIGIQARFGSL*PQPSSYCPFPG
Trigger: GCCAGGGAAAGGACAGTAGGAGGATGGTTGTGGGCACAGACTTCCGAATCGGGCCTGGATTCCAATTCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000410105.2
CDS CCA 72 bp CCCGAACGGAAACGCAGTATCTTTTTCTTGAGCGCGTaGGAAGCTTTGATTTTCACGAAGACTTTGGCGGGG +
Preference number: 6 (lower is better)
Translates to: PERKRSIFFLSA*EALIFTKTLAG
Trigger: CCCCGCCAAAGTCTTCGTGAAAATCAAAGCTTCCCACGCGCTCAAGAAAAAGATACTGCGTTTCCGTTCGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CAA 90 bp GTCATGACCTTGAGAGAACCCGAACGGAAACGCAGTATCTTTTTCTaGAGCGCGTGGGAAGCTTTGATTTTCACGAAGACTTTGGCGGGG +
Preference number: 6 (lower is better)
Translates to: VMTLREPERKRSIFF*SAWEALIFTKTLAG
Trigger: CCCCGCCAAAGTCTTCGTGAAAATCAAAGCTTCCCACGCGCTCAAGAAAAAGATACTGCGTTTCCGTTCGGGTTCTCTCAAGGTCATGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CAA 72 bp TTGAGAGAACCCGAACGGAAACGCAGTATCTTTTTCTaGAGCGCGTGGGAAGCTTTGATTTTCACGAAGACT +
Preference number: 6 (lower is better)
Translates to: LREPERKRSIFF*SAWEALIFTKT
Trigger: AGTCTTCGTGAAAATCAAAGCTTCCCACGCGCTCAAGAAAAAGATACTGCGTTTCCGTTCGGGTTCTCTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7
CDS CAA 72 bp CAAGCAAATCCCCAAACTCACACTGTAGTCATGACCTaGAGAGAACCCGAACGGAAACGCAGTATCTTTTTC +
Preference number: 6 (lower is better)
Translates to: QANPQTHTVVMT*REPERKRSIFF
Trigger: GAAAAAGATACTGCGTTTCCGTTCGGGTTCTCTCAAGGTCATGACTACAGTGTGAGTTTGGGGATTTGCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000300875.4
ENST00000391916.7