RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CYSTM1 (Homo sapiens)

Ensembl gene IDs: ENSG00000120306

Ensembl transcript IDs: ENST00000504227.5, ENST00000509589.5, ENST00000509789.2, ENST00000644078.1

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGCTGGCTGGGCTGGGCGGGCCAGCTGATGGAGGAAAATCGGACTTaGTGCTATGGCAGCCTGGCGCCACCCTGTCAGAGGTGGCAGCAG +
Preference number: 5 (lower is better)
Translates to: GWLGWAGQLMEENRT*CYGSLAPPCQRWQQ
Trigger: CTGCTGCCACCTCTGACAGGGTGGCGCCAGGCTGCCATAGCAGCAAGTCCGATTTTCCTCCATCAGCTGGCCCGCCCAGCCCAGCCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS CCA 90 bp GGCAGAGTCGGCAGGGAGCTAGCTGTCAGCTGCGGCTTCTCGGGCTaGCTGGGCTGGGCGGGCCAGCTGATGGAGGAAAATCGGACTTGC +
Preference number: 5 (lower is better)
Translates to: GRVGRELAVSCGFSG*LGWAGQLMEENRTC
Trigger: GCAAGTCCGATTTTCCTCCATCAGCTGGCCCGCCCAGCCCAGCCAGCCCGAGAAGCCGCAGCTGACAGCTAGCTCCCTGCCGACTCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS GCA 90 bp TGGCTGGGCTGGGCGGGCCAGCTGATGGAGGAAAATCGGACTTGCTaGTATGGCAGCCTGGCGCCACCCTGTCAGAGGTGGCAGCAGAGC +
Preference number: 5 (lower is better)
Translates to: WLGWAGQLMEENRTC*YGSLAPPCQRWQQS
Trigger: GCTCTGCTGCCACCTCTGACAGGGTGGCGCCAGGCTGCCATAGCAGCAAGTCCGATTTTCCTCCATCAGCTGGCCCGCCCAGCCCAGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS CCA 90 bp GGCAGGGAGCTAGCTGTCAGCTGCGGCTTCTCGGGCTGGCTGGGCTaGGCGGGCCAGCTGATGGAGGAAAATCGGACTTGCTGCTATGGC +
Preference number: 5 (lower is better)
Translates to: GRELAVSCGFSGWLG*AGQLMEENRTCCYG
Trigger: GCCATAGCAGCAAGTCCGATTTTCCTCCATCAGCTGGCCCGCCCAGCCCAGCCAGCCCGAGAAGCCGCAGCTGACAGCTAGCTCCCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS GCA 90 bp CAGGAGGCAGCAGCAGCAGAGAGCAGCCCAGCAAGCAGCCAGGACTaGCTGACACCCGCTGTCCATCTTCCTTTCCCGTTCTATCACGTA +
Preference number: 5 (lower is better)
Translates to: QEAAAAESSPASSQD*LTPAVHLPFPFYHV
Trigger: TACGTGATAGAACGGGAAAGGAAGATGGACAGCGGGTGTCAGGCAGTCCTGGCTGCTTGCTGGGCTGCTCTCTGCTGCTGCTGCCTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000644078.1
CDS TCA 90 bp AGGCAGCAGCAGCAGAGAGCAGCCCAGCAAGCAGCCAGGACTGCCTaGCACCCGCTGTCCATCTTCCTTTCCCGTTCTATCACGTACACT +
Preference number: 5 (lower is better)
Translates to: RQQQQRAAQQAARTA*HPLSIFLSRSITYT
Trigger: AGTGTACGTGATAGAACGGGAAAGGAAGATGGACAGCGGGTGTCAGGCAGTCCTGGCTGCTTGCTGGGCTGCTCTCTGCTGCTGCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000644078.1
CDS GCA 90 bp CTACTCAGCATTCCGTATGTCCTGGGCTCCACAGAGGGATCGTCCTaGTGCAGACATTCCAGGTCCTGCTGTCAGAGGTGGCAGCAGAGC +
Preference number: 5 (lower is better)
Translates to: LLSIPYVLGSTEGSS*CRHSRSCCQRWQQS
Trigger: GCTCTGCTGCCACCTCTGACAGCAGGACCTGGAATGTCTGCAGCAGGACGATCCCTCTGTGGAGCCCAGGACATACGGAATGCTGAGTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504227.5
CDS CCA 90 bp ATGCTATTCATTCAGTGTGGTTTCTACTCAGCATTCCGTATGTCCTaGGCTCCACAGAGGGATCGTCCTGCTGCAGACATTCCAGGTCCT +
Preference number: 5 (lower is better)
Translates to: MLFIQCGFYSAFRMS*APQRDRPAADIPGP
Trigger: AGGACCTGGAATGTCTGCAGCAGGACGATCCCTCTGTGGAGCCCAGGACATACGGAATGCTGAGTAGAAACCACACTGAATGAATAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504227.5
CDS CCA 90 bp TCTGTGCAAGTAGCTGTTCTAAGTCCCAATGCTATTCATTCAGTGTaGTTTCTACTCAGCATTCCGTATGTCCTGGGCTCCACAGAGGGA +
Preference number: 5 (lower is better)
Translates to: SVQVAVLSPNAIHSV*FLLSIPYVLGSTEG
Trigger: TCCCTCTGTGGAGCCCAGGACATACGGAATGCTGAGTAGAAACCACACTGAATGAATAGCATTGGGACTTAGAACAGCTACTTGCACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504227.5
CDS CAA 90 bp GGGCTGGCTGGGCTGGGCGGGCCAGCTGATGGAGGAAAATCGGACTaGCTGCTATGGCAGCCTGGCGCCACCCTGTCAGAGGTGGCAGCA +
Preference number: 6 (lower is better)
Translates to: GLAGLGGPADGGKSD*LLWQPGATLSEVAA
Trigger: TGCTGCCACCTCTGACAGGGTGGCGCCAGGCTGCCATAGCAGCAAGTCCGATTTTCCTCCATCAGCTGGCCCGCCCAGCCCAGCCAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS CCA 72 bp GGCAGGGAGCTAGCTGTCAGCTGCGGCTTCTCGGGCTaGCTGGGCTGGGCGGGCCAGCTGATGGAGGAAAAT +
Preference number: 6 (lower is better)
Translates to: GRELAVSCGFSG*LGWAGQLMEEN
Trigger: ATTTTCCTCCATCAGCTGGCCCGCCCAGCCCAGCCAGCCCGAGAAGCCGCAGCTGACAGCTAGCTCCCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS CCA 72 bp CTAGCTGTCAGCTGCGGCTTCTCGGGCTGGCTGGGCTaGGCGGGCCAGCTGATGGAGGAAAATCGGACTTGC +
Preference number: 6 (lower is better)
Translates to: LAVSCGFSGWLG*AGQLMEENRTC
Trigger: GCAAGTCCGATTTTCCTCCATCAGCTGGCCCGCCCAGCCCAGCCAGCCCGAGAAGCCGCAGCTGACAGCTAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS CAA 72 bp GGGCTGGGCGGGCCAGCTGATGGAGGAAAATCGGACTaGCTGCTATGGCAGCCTGGCGCCACCCTGTCAGAG +
Preference number: 6 (lower is better)
Translates to: GLGGPADGGKSD*LLWQPGATLSE
Trigger: CTCTGACAGGGTGGCGCCAGGCTGCCATAGCAGCAAGTCCGATTTTCCTCCATCAGCTGGCCCGCCCAGCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS GCA 72 bp TGGGCGGGCCAGCTGATGGAGGAAAATCGGACTTGCTaGTATGGCAGCCTGGCGCCACCCTGTCAGAGGTGG +
Preference number: 6 (lower is better)
Translates to: WAGQLMEENRTC*YGSLAPPCQRW
Trigger: CCACCTCTGACAGGGTGGCGCCAGGCTGCCATAGCAGCAAGTCCGATTTTCCTCCATCAGCTGGCCCGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS GCA 72 bp GCAGCAGCAGAGAGCAGCCCAGCAAGCAGCCAGGACTaGCTGACACCCGCTGTCCATCTTCCTTTCCCGTTC +
Preference number: 6 (lower is better)
Translates to: AAAESSPASSQD*LTPAVHLPFPF
Trigger: GAACGGGAAAGGAAGATGGACAGCGGGTGTCAGGCAGTCCTGGCTGCTTGCTGGGCTGCTCTCTGCTGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000644078.1
CDS CCA 72 bp GGGCCAGCTGATGGAGGAAAATCGGACTTGCTGCTATaGCAGCCTGGCGCCACCCTGTCAGAGGTGGCAGCA +
Preference number: 6 (lower is better)
Translates to: GPADGGKSDLLL*QPGATLSEVAA
Trigger: TGCTGCCACCTCTGACAGGGTGGCGCCAGGCTGCCATAGCAGCAAGTCCGATTTTCCTCCATCAGCTGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509589.5
CDS GCA 72 bp ATTCCGTATGTCCTGGGCTCCACAGAGGGATCGTCCTaGTGCAGACATTCCAGGTCCTGCTGTCAGAGGTGG +
Preference number: 6 (lower is better)
Translates to: IPYVLGSTEGSS*CRHSRSCCQRW
Trigger: CCACCTCTGACAGCAGGACCTGGAATGTCTGCAGCAGGACGATCCCTCTGTGGAGCCCAGGACATACGGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504227.5
CDS CCA 72 bp CTTCTACCACATACACTCTCCTCTCCACGAACCGACTaGATAACGGTCGGGTCTGAACCTGAGGAGCCCGGA +
Preference number: 6 (lower is better)
Translates to: LLPHTLSSPRTD*ITVGSEPEEPG
Trigger: TCCGGGCTCCTCAGGTTCAGACCCGACCGTTATCCAGTCGGTTCGTGGAGAGGAGAGTGTATGTGGTAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509789.2
CDS CCA 72 bp ATTCAGTGTGGTTTCTACTCAGCATTCCGTATGTCCTaGGCTCCACAGAGGGATCGTCCTGCTGCAGACATT +
Preference number: 6 (lower is better)
Translates to: IQCGFYSAFRMS*APQRDRPAADI
Trigger: AATGTCTGCAGCAGGACGATCCCTCTGTGGAGCCCAGGACATACGGAATGCTGAGTAGAAACCACACTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504227.5
CDS CCA 72 bp GTAGCTGTTCTAAGTCCCAATGCTATTCATTCAGTGTaGTTTCTACTCAGCATTCCGTATGTCCTGGGCTCC +
Preference number: 6 (lower is better)
Translates to: VAVLSPNAIHSV*FLLSIPYVLGS
Trigger: GGAGCCCAGGACATACGGAATGCTGAGTAGAAACCACACTGAATGAATAGCATTGGGACTTAGAACAGCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504227.5