Pregenerated sensors for CXCL2 (Homo sapiens)
Ensembl gene IDs: ENSG00000081041Ensembl transcript IDs: ENST00000508487.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCCTCTATCACAGTGGCTaGCATGTGATATGTCATCAC | + |
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Preference number: 2 (lower is better) Translates to: HIHFPAVTLISLAIFLDSLYHSG*HVICHH Trigger: GTGATGACATATCACATGTCAGCCACTGTGATAGAG...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| 3UTR-3UTR TCA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCACAGTGGCTGACATGTaGTATGTCATCACGAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: HIHFPAVTLISLAIFLDSTVADM*YVITKK Trigger: TTTCTTCGTGATGACATATCACATGTCAGCCACTGT...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| CDS-3UTR GCA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCCGGTTCGAGCGGCTGTaGGAGGAGGAGAGCTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: HIHFPAVTLISLAIFLDSRFERL*EEESWQ Trigger: TTGCCAGCTCTCCTCCTCGCACAGCCGCTCGAACCG...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| CDS-3UTR TCA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCTCCCTGCCGTCACATTaGTCTCACTGGCCATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: HIHFPAVTLISLAIFLDSSLPSH*SHWPFS Trigger: AGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGA...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| CDS-3UTR GCA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCACACATACATTTCCCTaGCGTCACATTGATCTCACT | + |
|
Preference number: 4 (lower is better) Translates to: HIHFPAVTLISLAIFLDSTHTFP*RHIDLT Trigger: AGTGAGATCAATGTGACGGCAGGGAAATGTATGTGT...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| CDS-3UTR GCA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCATATCGAAACCTCTCTaGTCTAACACAGAGGGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: HIHFPAVTLISLAIFLDSISKPL*SNTEGN Trigger: GTTTCCCTCTGTGTTAGAGCAGAGAGGTTTCGATAT...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| CDS-3UTR CCA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCTTCCTTCTGGTCAGTTaGATTTGCCATTTTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HIHFPAVTLISLAIFLDSFLLVS*ICHFSA Trigger: TGCTGAAAAATGGCAAATCCAACTGACCAGAAGGAA...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| CDS-3UTR GCA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCCTGGTCAGTTGGATTTaGCATTTTTCAGCATCTTTT | + |
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Preference number: 4 (lower is better) Translates to: HIHFPAVTLISLAIFLDSLVSWI*HFSASF Trigger: AAAAGATGCTGAAAAATGGCAAATCCAACTGACCAG...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| CDS-3UTR CAA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCTTCCCTGCCGTCACATaGATCTCACTGGCCATTTTC | + |
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Preference number: 5 (lower is better) Translates to: HIHFPAVTLISLAIFLDSFPAVT*ISLAIF Trigger: GAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAA...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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| CDS-3UTR CAA 90 bp | CACATACATTTCCCTGCCGTCACATTGATCTCACTGGCCATTTTCTTGGATTCCTCTGGTCAGTTGGATTaGCCATTTTTCAGCATCTTT | + |
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Preference number: 5 (lower is better) Translates to: HIHFPAVTLISLAIFLDSSGQLD*PFFSIF Trigger: AAAGATGCTGAAAAATGGCAAATCCAACTGACCAGA...GGAATCCAAGAAAATGGCCAGTGAGATCAATGTGACGGCAGGGAAATGTATGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508487.3 |
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