Pregenerated sensors for CXCL1 (Homo sapiens)
Ensembl gene IDs: ENSG00000163739Ensembl transcript IDs: ENST00000395761.4, ENST00000509101.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACACACGGACGCTCCTGCTaGGCGCCGGCCAGCGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTHGRSC*APASGY Trigger: GTAGCCGCTGGCCGGCGCGCAGCAGGAGCGTCCGTG...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR GCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACAGCAGGAGCCGGGGATTaGTGGGGGCGGCGGAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTAGAGD*WGRRRE Trigger: CTCTCTCCGCCGCCCCCAGCAATCCCCGGCTCCTGC...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR TCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACACGGGTCTGGCGGCTGTaGGAGGAGCGGAAGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTRVWRL*EERKSW Trigger: CCAGCTCTTCCGCTCCTCTCACAGCCGCCAGACCCG...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR TCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACATGGGGGATGCAGGATTaGGGCAAGCTTTCCGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTWGMQD*GKLSAH Trigger: ATGGGCGGAAAGCTTGCCTCAATCCTGCATCCCCCA...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR CCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACACTCTATCACAGTGGCTaGCATGTTGCAGGCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTLYHSG*HVAGSS Trigger: TGAGGAGCCTGCAACATGCCAGCCACTGTGATAGAG...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR TCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACACCCCTGCCTTCACAATaGTCTCATTGGCCATTTGCT | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTPLPSQ*SHWPFA Trigger: AGCAAATGGCCAATGAGATCATTGTGAAGGCAGGGG...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR GCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACAATCTCATTGGCCATTTaGTTGGATCCGCCAGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTISLAI*LDPPAS Trigger: AGAGGCTGGCGGATCCAAGCAAATGGCCAATGAGAT...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR GCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACACAGTGGCTGGCATGTTaGAGGCTCCTCAGAAATATT | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTQWLAC*RLLRNI Trigger: AATATTTCTGAGGAGCCTGCAACATGCCAGCCACTG...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR GCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACACTTAACTATGGGGGATaGAGGATTGAGGCAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTLNYGG*RIEASF Trigger: AAAGCTTGCCTCAATCCTGCATCCCCCATAGTTAAG...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR GCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACAGCACATACATTCCCCTaGCTTCACAATGATCTCATT | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTAHTFP*LHNDLI Trigger: AATGAGATCATTGTGAAGGCAGGGGAATGTATGTGC...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR GCA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACAGTTACAAAACAGATGTaGACATACATTCCCCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: CCRLLRNINIMTGEHLKTVTKQM*TYIPLP Trigger: AGGCAGGGGAATGTATGTGCACATCTGTTTTGTAAC...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR CAA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACAGATCTCATTGGCCATTaGCTTGGATCCGCCAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: CCRLLRNINIMTGEHLKTDLIGH*LGSASL Trigger: GAGGCTGGCGGATCCAAGCAAATGGCCAATGAGATC...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR CAA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACAGCTTTCCGCCCATTCTaGAGTGTGGCTATGACTTCG | + |
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Preference number: 5 (lower is better) Translates to: CCRLLRNINIMTGEHLKTAFRPF*SVAMTS Trigger: CGAAGTCATAGCCACACTCAAGAATGGGCGGAAAGC...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR CAA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACAACAGTGGCTGGCATGTaGCAGGCTCCTCAGAAATAT | + |
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Preference number: 5 (lower is better) Translates to: CCRLLRNINIMTGEHLKTTVAGM*QAPQKY Trigger: ATATTTCTGAGGAGCCTGCAACATGCCAGCCACTGT...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR CAA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACATTCACAATGATCTCATaGGCCATTTGCTTGGATCCG | + |
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Preference number: 5 (lower is better) Translates to: CCRLLRNINIMTGEHLKTFTMIS*AICLDP Trigger: CGGATCCAAGCAAATGGCCAATGAGATCATTGTGAA...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS-3UTR CAA 90 bp | TGTTGCAGGCTCCTCAGAAATATTAACATAATGACTGGAGAACATTTGAAAACATCTGGTCAGTTGGATTaGTCACTGTTCAGCATCTTT | + |
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Preference number: 5 (lower is better) Translates to: CCRLLRNINIMTGEHLKTSGQLD*SLFSIF Trigger: AAAGATGCTGAACAGTGACAAATCCAACTGACCAGA...TGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395761.4 |
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| CDS CAA 72 bp | GGGGATGCAGGATTGAGGCAAGCTTTCCGCCCATTCTaGAGTGTGGCTATGACTTCGGTTTGGGCGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: GDAGLRQAFRPF*SVAMTSVWAQW Trigger: CCACTGCGCCCAAACCGAAGTCATAGCCACACTCAAGAATGGGCGGAAAGCTTGCCTCAATCCTGCATCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000395761.4 ENST00000509101.1 |
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