RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CUL5 (Homo sapiens)

Ensembl gene IDs: ENSG00000166266

Ensembl transcript IDs: ENST00000393094.7, ENST00000526303.1, ENST00000531427.5, ENST00000531843.1, ENST00000532064.5

Found 251 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACCTaGATAAAGGATGCCAACTGTGATTCCAGACCTTTACAAACTGCT +
Preference number: 1 (lower is better)
Translates to: PCSAPILSVRWREET*IKDANCDSRPLQTA
Trigger: AGCAGTTTGTAAAGGTCTGGAATCACAGTTGGCATCCTTTATTCAGGTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR GCA 90 bp AAATACGCCAATGCTGAATTATCTACATCTGCCGTTTCCCAATGTTaGATTGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGAGTGC +
Preference number: 1 (lower is better)
Translates to: KYANAELSTSAVSQC*IDQLTLFIKRNQEC
Trigger: GCACTCTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGATAATTCAGCATTGGCGTATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000531427.5
3UTR CCA 90 bp CTTTCAAGTTGTTCACGTCCTCAAGTCCTAAAATTTCCACTACTCTaGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTACTTTGGATA +
Preference number: 1 (lower is better)
Translates to: LSSCSRPQVLKFPLL*VFSCQQLVKLLLWI
Trigger: TATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGGAAATTTTAGGACTTGAGGACGTGAACAACTTGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR TCA 90 bp TTTCCTTCCATTCAGCAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCCAGTGCATGAATATCTaGAGATCCTTCCTTGTGCAA +
Preference number: 2 (lower is better)
Translates to: FPSIQQAVHKASSDGDRSQCMNI*RSFLVQ
Trigger: TTGCACAAGGAAGGATCTTCAGATATTCATGCACTG...GGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTGCTGAATGGAAGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR TCA 90 bp TCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGAAAGCACTCCACTGTAACTTACCCCTAGGTGACTaGTTCAAACCTGAGGCTACA +
Preference number: 2 (lower is better)
Translates to: SSDGDRSYEMLLKALHCNLPLGD*FKPEAT
Trigger: TGTAGCCTCAGGTTTGAATCAGTCACCTAGGGGTAA...GTTACAGTGGAGTGCTTTCAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR GCA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAAGCCGTTTCCCAATGTTaGATTGACCAGCTCACTCTT +
Preference number: 2 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQAVSQC*IDQLTL
Trigger: AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGC...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR CAA 90 bp GTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTaGAAAGCACTCCACTGTAACATAATACTGTATGCCTTTCTGTAC +
Preference number: 2 (lower is better)
Translates to: VHKASSDGDRSYEML*KALHCNIILYAFLY
Trigger: GTACAGAAAGGCATACAGTATTATGTTACAGTGGAGTGCTTTCAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR TCA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACATAATGGGCTCTTCATaGATGCAAGTTTCTCCACAA +
Preference number: 2 (lower is better)
Translates to: QVISLLGTNFKCTLERRDIMGSS*MQVSPQ
Trigger: TTGTGGAGAAACTTGCATTCATGAAGAGCCCATTAT...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR-3UTR TCA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAACAGTGCATGAATATCTaGAGATCCTTCCTTGTGCAA +
Preference number: 2 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQQCMNI*RSFLVQ
Trigger: TTGCACAAGGAAGGATCTTCAGATATTCATGCACTG...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR-3UTR TCA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACAAACGTGCACCACAATaGATAAAAATCCACGTTGAG +
Preference number: 2 (lower is better)
Translates to: QVISLLGTNFKCTLERRDKRAPQ*IKIHVE
Trigger: CTCAACGTGGATTTTTATTCATTGTGGTGCACGTTT...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR TCA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAACAAATACGCCAATGCTaGATTATCTACATCTGCCGT +
Preference number: 2 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQQIRQC*IIYICR
Trigger: ACGGCAGATGTAGATAATTCAGCATTGGCGTATTTG...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000531427.5
3UTR-3UTR GCA 90 bp AACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTGGGCTCTTCATGAATaGAAGTTTCTCCACAAAACA +
Preference number: 2 (lower is better)
Translates to: NFSPTSAVSQCCIDQLTLWALHE*KFLHKT
Trigger: TGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCA...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR GCA 90 bp AACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAATGGGCTCTTCATGAATaGAAGTTTCTCCACAAAACA +
Preference number: 2 (lower is better)
Translates to: NCRLYPCSAPILSVRWREWALHE*KFLHKT
Trigger: TGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCA...TTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR-3UTR GCA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACAACTTTACAACTTTCTaGCCAAGCACTCCAAAATTT +
Preference number: 2 (lower is better)
Translates to: QVISLLGTNFKCTLERRDNFTTF*PSTPKF
Trigger: AAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTT...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR-3UTR CCA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAACTGTATTTCTCCTGGTaGGTACAAATCAAATTCACT +
Preference number: 2 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQLYFSW*VQIKFT
Trigger: AGTGAATTTGATTTGTACCCACCAGGAGAAATACAG...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR CAA 90 bp ACGCCAATGCTGAATTATCTACATCTGCCGTTTCCCAATGTTGCATaGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGAGTGCTATT +
Preference number: 2 (lower is better)
Translates to: TPMLNYLHLPFPNVA*TSSLFSSKETKSAI
Trigger: AATAGCACTCTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGATAATTCAGCATTGGCGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000531427.5
3UTR-3UTR TCA 90 bp CCACTACTCTGGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTACTTTGGATAATAATGGGCTCTTCATaGATGCAAGTTTCTCCACAA +
Preference number: 2 (lower is better)
Translates to: PLLWVFSCQQLVKLLLWIIMGSS*MQVSPQ
Trigger: TTGTGGAGAAACTTGCATTCATGAAGAGCCCATTAT...TATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR TCA 90 bp CCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGGCATTTTTCAGTGCATaGATATCTGAAGATCCTTCC +
Preference number: 2 (lower is better)
Translates to: PFPNVALTSSLFSSKETKAFFSA*ISEDPS
Trigger: GGAAGGATCTTCAGATATTCATGCACTGAAAAATGC...CTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR-3UTR GCA 90 bp ACTTACTCCGGCAACGAGATGGCAACACAAGTTAACATTTTCCAGATGGGATGTAACTTTACAACTTTCTaGCCAAGCACTCCAAAATTT +
Preference number: 2 (lower is better)
Translates to: TYSGNEMATQVNIFQMGCNFTTF*PSTPKF
Trigger: AAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTT...ACATCCCATCTGGAAAATGTTAACTTGTGTTGCCATCTCGTTGCCGGAGTAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR CAA 90 bp AAATACTTAACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATaGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGAGTGCTATT +
Preference number: 2 (lower is better)
Translates to: KYLTSHLHLPFPNVA*TSSLFSSKETKSAI
Trigger: AATAGCACTCTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTTAAGTATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR GCA 90 bp GTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTCTGTTGAATCCAAGTATGTACCAGCTTCATTaGACTATCTTGGAGTCTGTT +
Preference number: 2 (lower is better)
Translates to: VVNTRVLVFYKISLLNPSMYQLH*TILESV
Trigger: AACAGACTCCAAGATAGTGCAATGAAGCTGGTACAT...ACTTGGATTCAACAGAGAGATTTTATAGAACACAAGCACCCTCGTATTTACAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000532064.5
3UTR-3UTR CCA 90 bp TTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACAACTGTATTTCTCCTaGTGGGTACAAATCAAATTC +
Preference number: 2 (lower is better)
Translates to: FFSLNCRLYPCSAPILSVQLYFS*WVQIKF
Trigger: GAATTTGATTTGTACCCACCAGGAGAAATACAGTTG...TACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR-3UTR CCA 90 bp CTGTACATTTACAGTATTTGCTGCTGTTCATTCCCCAAAATACAATTAGGACATCTGTATTTCTCCTGGTaGGTACAAATCAAATTCACT +
Preference number: 2 (lower is better)
Translates to: LYIYSICCCSFPKIQLGHLYFSW*VQIKFT
Trigger: AGTGAATTTGATTTGTACCCACCAGGAGAAATACAG...ATGTCCTAATTGTATTTTGGGGAATGAACAGCAGCAAATACTGTAAATGTACAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR CCA 72 bp TTCCATTCAGCAGGCAGTTCACAAAGCCTCTTCGGATaGGGACAGATCCTACGAAATGCTCTTGAAAGCACT +
Preference number: 3 (lower is better)
Translates to: FHSAGSSQSLFG*GQILRNALEST
Trigger: AGTGCTTTCAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTGCTGAATGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR CAA 90 bp CAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGTTTTCAGGTCTTATGTaGTGGTTTTTCTCTTACCCC +
Preference number: 3 (lower is better)
Translates to: QAVHKASSDGDRSYEMLLFSGLM*WFFSYP
Trigger: GGGGTAAGAGAAAAACCACAACATAAGACCTGAAAA...CAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR CAA 90 bp ACTTACTCCGGCAACGAGATGGCAACACAAGTTAACATTTTCCAGATGGGATGTTCCTACGAAATGCTCTaGAAAGCACTCCACTGTAAC +
Preference number: 3 (lower is better)
Translates to: TYSGNEMATQVNIFQMGCSYEML*KALHCN
Trigger: GTTACAGTGGAGTGCTTTCAAGAGCATTTCGTAGGA...ACATCCCATCTGGAAAATGTTAACTTGTGTTGCCATCTCGTTGCCGGAGTAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR CAA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACTTTCAGAACAGGCATTaGGCTATACTCAGCAAAACT +
Preference number: 3 (lower is better)
Translates to: QVISLLGTNFKCTLERRDFQNRH*AILSKT
Trigger: AGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAA...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR CAA 90 bp ACTTACTCCGGCAACGAGATGGCAACACAAGTTAACATTTTCCAGATGGGATGTTTTCCCAATGTTGCATaGACCAGCTCACTCTTTTCA +
Preference number: 3 (lower is better)
Translates to: TYSGNEMATQVNIFQMGCFPNVA*TSSLFS
Trigger: TGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAA...ACATCCCATCTGGAAAATGTTAACTTGTGTTGCCATCTCGTTGCCGGAGTAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR TCA 72 bp CTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATTaGCCAGCTCACTCTTTTCATCAAAAGAAACCAAGA +
Preference number: 3 (lower is better)
Translates to: LLTYICRFPMLH*PAHSFHQKKPR
Trigger: TCTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR TCA 72 bp GCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACCTaGATAAAGGATGCCAACTGTGATTCCAGACCTTTA +
Preference number: 3 (lower is better)
Translates to: APILSVRWREET*IKDANCDSRPL
Trigger: TAAAGGTCTGGAATCACAGTTGGCATCCTTTATTCAGGTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR-3UTR CAA 90 bp AACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTCAAGCACTCCAAAATTaGGGTTCTAAATATTGTCCA +
Preference number: 3 (lower is better)
Translates to: NFSPTSAVSQCCIDQLTLQALQN*GSKYCP
Trigger: TGGACAATATTTAGAACCCAAATTTTGGAGTGCTTG...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR CAA 90 bp ACTTACTCCGGCAACGAGATGGCAACACAAGTTAACATTTTCCAGATGGGATGTGTACATTTACAGTATTaGCTGCTGTTCATTCCCCAA +
Preference number: 3 (lower is better)
Translates to: TYSGNEMATQVNIFQMGCVHLQY*LLFIPQ
Trigger: TTGGGGAATGAACAGCAGCAAATACTGTAAATGTAC...ACATCCCATCTGGAAAATGTTAACTTGTGTTGCCATCTCGTTGCCGGAGTAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR GCA 72 bp CTTAACTTCTCACCTACATCTGCCGTTTCCCAATGTTaGATTGACCAGCTCACTCTTTTCATCAAAAGAAAC +
Preference number: 3 (lower is better)
Translates to: LNFSPTSAVSQC*IDQLTLFIKRN
Trigger: GTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR CCA 72 bp TGTTCACGTCCTCAAGTCCTAAAATTTCCACTACTCTaGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTA +
Preference number: 3 (lower is better)
Translates to: CSRPQVLKFPLL*VFSCQQLVKLL
Trigger: TAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGGAAATTTTAGGACTTGAGGACGTGAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR CAA 90 bp ACTTACTCCGGCAACGAGATGGCAACACAAGTTAACATTTTCCAGATGGGATGTAAGAGTGCAACAATTTaGCTTCTGTTTTTCAGGTCT +
Preference number: 3 (lower is better)
Translates to: TYSGNEMATQVNIFQMGCKSATI*LLFFRS
Trigger: AGACCTGAAAAACAGAAGCAAAATTGTTGCACTCTT...ACATCCCATCTGGAAAATGTTAACTTGTGTTGCCATCTCGTTGCCGGAGTAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR TCA 72 bp TGCCAGCAACTAGTTAAGTTGCTACTTTGGATAGACTaGAAGGAACATGGTAAATGTTGCCTTCTGACGATT +
Preference number: 3 (lower is better)
Translates to: CQQLVKLLLWID*KEHGKCCLLTI
Trigger: AATCGTCAGAAGGCAACATTTACCATGTTCCTTTCAGTCTATCCAAAGTAGCAACTTAACTAGTTGCTGGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR GCA 72 bp CAAGTCCTAAAATTTCCACTACTCTGGGTATTCAGTTaGCAGCAACTAGTTAAGTTGCTACTTTGGATAGAC +
Preference number: 3 (lower is better)
Translates to: QVLKFPLLWVFS*QQLVKLLLWID
Trigger: GTCTATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGGAAATTTTAGGACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR-3UTR CAA 90 bp TCTGTACACCATTTTGTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTCATGTACCAGCTTCATaGCACTATCTTGGAGTCTGT +
Preference number: 3 (lower is better)
Translates to: SVHHFVVNTRVLVFYKISHVPAS*HYLGVC
Trigger: ACAGACTCCAAGATAGTGCAATGAAGCTGGTACATG...AGAGATTTTATAGAACACAAGCACCCTCGTATTTACAACAAAATGGTGTACAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000532064.5
3UTR GCA 72 bp AATGCTGAATTATCTACATCTGCCGTTTCCCAATGTTaGATTGACCAGCTCACTCTTTTCATCAAAAGAAAC +
Preference number: 3 (lower is better)
Translates to: NAELSTSAVSQC*IDQLTLFIKRN
Trigger: GTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGATAATTCAGCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000531427.5
3UTR-3UTR CAA 90 bp CTGTACATTTACAGTATTTGCTGCTGTTCATTCCCCAAAATACAATTAGGACATTTTCCCAATGTTGCATaGACCAGCTCACTCTTTTCA +
Preference number: 3 (lower is better)
Translates to: LYIYSICCCSFPKIQLGHFPNVA*TSSLFS
Trigger: TGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAA...ATGTCCTAATTGTATTTTGGGGAATGAACAGCAGCAAATACTGTAAATGTACAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACCTCCCGGCCAGGCCTTaGCCGGAGGCCGGAGCTCCC +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYLPARP*PEAGAP
Trigger: GGGAGCTCCGGCCTCCGGTCAAGGCCTGGCCGGGAG...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACGCGCGCCGACAGCGCTaGCCTCGTCCCAAGCACCAG +
Preference number: 4 (lower is better)
Translates to: QVISLLGTNFKCTLERRDARRQR*PRPKHQ
Trigger: CTGGTGCTTGGGACGAGGTCAGCGCTGTCGGCGCGC...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp TTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTAGCCCGCACCAGGGTGTaGTGGGCGCTGGAGCAGCGC +
Preference number: 4 (lower is better)
Translates to: FFSLNCRLYPCSAPILSVARTRV*WALEQR
Trigger: GCGCTGCTCCAGCGCCCACCACACCCTGGTGCGGGC...TACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp CAGCTGAGAATCAAAAGCTTCTCCCAATCTCTCAGCATGTACCAGCTTCATTGCATTAGCCTTTGTGGTTaGACCCGCCGCGGCCACCTG +
Preference number: 4 (lower is better)
Translates to: QLRIKSFSQSLSMYQLHCISLCG*TRRGHL
Trigger: CAGGTGGCCGCGGCGGGTGCAACCACAAAGGCTAAT...GCAATGAAGCTGGTACATGCTGAGAGATTGGGAGAAGCTTTTGATTCTCAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR TCA 90 bp GTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTCTGTTGAATCCAAGTGCGCGCCGACAGCGCTaGCCTCGTCCCAAGCACCAG +
Preference number: 4 (lower is better)
Translates to: VVNTRVLVFYKISLLNPSARRQR*PRPKHQ
Trigger: CTGGTGCTTGGGACGAGGTCAGCGCTGTCGGCGCGC...ACTTGGATTCAACAGAGAGATTTTATAGAACACAAGCACCCTCGTATTTACAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR GCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACGCCGTTTCCCAATGTTaGATTGACCAGCTCACTCTT +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYAVSQC*IDQLTL
Trigger: AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGC...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp TTTCCTTCCATTCAGCAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCCCATGTTCTTTAACTTaGACTCTCGCGAGACGACGC +
Preference number: 4 (lower is better)
Translates to: FPSIQQAVHKASSDGDRSPCSLT*TLARRR
Trigger: GCGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGG...GGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTGCTGAATGGAAGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACCAAAGCCTCTTCGGATaGGGACAGATCCTACGAAAT +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYQSLFG*GQILRN
Trigger: ATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTG...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAAGAACTCCTGGTTCACTaGGAAGAGGGTACCTTCTGT +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQELLVH*EEGTFC
Trigger: ACAGAAGGTACCCTCTTCTCAGTGAACCAGGAGTTC...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAACCCGCCGCGGCCACCTaGAACGAATTTAGCTCGGCT +
Preference number: 4 (lower is better)
Translates to: PAQTLQLSAQALQNLGSKPAAAT*NEFSSA
Trigger: AGCCGAGCTAAATTCGTTGCAGGTGGCCGCGGCGGG...TTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp TCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACATTAGCCTTTGTGGTTaGACCCGCCGCGGCCACCTG +
Preference number: 4 (lower is better)
Translates to: SAVSQCCIDQLTLFIKRNISLCG*TRRGHL
Trigger: CAGGTGGCCGCGGCGGGTGCAACCACAAAGGCTAAT...GTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp CAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGAATAGTTTCAGCAGCTaGTACCATATCTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: QAVHKASSDGDRSYEMLLNSFSS*YHICQA
Trigger: GGCCTGGCAGATATGGTAGCAGCTGCTGAAACTATT...CAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAAGGAGCCGACCTGACTTaGAAGAGGAAGCATCGACTC +
Preference number: 4 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQGADLT*KRKHRL
Trigger: GAGTCGATGCTTCCTCTTCCAAGTCAGGTCGGCTCC...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp CAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATCGACGCGAGAATTCGTaGCGCTCCCGGCCAGGCCTT +
Preference number: 4 (lower is better)
Translates to: QHKLYNFLPKHSKIWVLNRRENS*RSRPGL
Trigger: AAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCG...ATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCGGAACGGCGAATGCTaGGAAGGTAACGGGAGCCGA +
Preference number: 4 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTRNGEC*EGNGSR
Trigger: TCGGCTCCCGTTACCTTCTCAGCATTCGCCGTTCCG...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp CAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGAACAATACAGCGAGCTaGAACGTGGTTACCTCCAAA +
Preference number: 4 (lower is better)
Translates to: QAVHKASSDGDRSYEMLLNNTAS*NVVTSK
Trigger: TTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTT...CAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACCAAAGACAGACTGCATaGACATCCGAAAACAGATCA +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYQRQTA*TSENRS
Trigger: TGATCTGTTTTCGGATGTGCATGCAGTCTGTCTTTG...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAATCCCACCCCCTTCTaGTTCAAAGGTAATTCAAGT +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYNPTPF*FKGNSS
Trigger: ACTTGAATTACCTTTGAAGCAGAAGGGGGTGGGATT...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp GTTGATAATGGGCTCTTCATGAATGCAAGTTTCTCCACAAAACAGCATGCTGTCCTCTTCTCCCCTACATaGTCACCGGAGCTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: VDNGLFMNASFSTKQHAVLFSPT*SPELPH
Trigger: GTGGGGAAGCTCCGGTGACCATGTAGGGGAGAAGAG...GACAGCATGCTGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCATTATCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp CCAATTTCCTATAAGTTTCAGAACAGGCATTTGGCTATACTCAGCAAAACTCTACGACGCGAGAATTCGTaGCGCTCCCGGCCAGGCCTT +
Preference number: 4 (lower is better)
Translates to: PISYKFQNRHLAILSKTLRRENS*RSRPGL
Trigger: AAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCG...TAGAGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAACTTATAGGAAATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAAAACAATACAGCGAGCTaGAACGTGGTTACCTCCAAA +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQNNTAS*NVVTSK
Trigger: TTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTT...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACACAAAACTTGCCGTTTaGGTTTTGGGAAAGCTACTA +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYTKLAV*VLGKLL
Trigger: TAGTAGCTTTCCCAAAACTCAAACGGCAAGTTTTGT...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAATGGAGAGAAGAGACCTaGATAAAGGATGCCAACTGT +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQWREET*IKDANC
Trigger: ACAGTTGGCATCCTTTATTCAGGTCTCTTCTCTCCA...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTACGCGAAAGACCTCATaGACGCGCTCAGGAAGACCG +
Preference number: 4 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTTRKTS*TRSGRP
Trigger: CGGTCTTCCTGAGCGCGTGCATGAGGTCTTTCGCGT...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACATGTACCAGCTTCATTaGACTATCTTGGAGTCTGTT +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYMYQLH*TILESV
Trigger: AACAGACTCCAAGATAGTGCAATGAAGCTGGTACAT...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACATACGCCTTATCTCTTaGAGTAAGAAATCGTGGATC +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYIRLIS*SKKSWI
Trigger: GATCCACGATTTCTTACTGCAAGAGATAAGGCGTAT...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGAATCCCACCCCCTTCTaGTTCAAAGGTAATTCAAGT +
Preference number: 4 (lower is better)
Translates to: QAVHKASSDGDRSYEMLLNPTPF*FKGNSS
Trigger: ACTTGAATTACCTTTGAAGCAGAAGGGGGTGGGATT...CAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp AGAACAAAGGTTAACATAGGATTCTCTTACTCCAATAACCAGCTGAGAATCAAACGACGCGAGAATTCGTaGCGCTCCCGGCCAGGCCTT +
Preference number: 4 (lower is better)
Translates to: RTKVNIGFSYSNNQLRIKRRENS*RSRPGL
Trigger: AAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCG...TTTGATTCTCAGCTGGTTATTGGAGTAAGAGAATCCTATGTTAACCTTTGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR TCA 90 bp CGGAGTTACATTCTCGTCTTGTTTCTAAATAACGTAGTGCTCGTTTTTCTTCTTCGGAACGGCGAATGCTaGGAAGGTAACGGGAGCCGA +
Preference number: 4 (lower is better)
Translates to: RSYILVLFLNNVVLVFLLRNGEC*EGNGSR
Trigger: TCGGCTCCCGTTACCTTCTCAGCATTCGCCGTTCCG...AAGAAGAAAAACGAGCACTACGTTATTTAGAAACAAGACGAGAATGTAACTCCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR TCA 90 bp GCTGAATTATCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTAAAGCCGTATCATCTTaGTGGCTCAGTACTCGTGCC +
Preference number: 4 (lower is better)
Translates to: AELSTSAVSQCCIDQLTLKAVSS*WLSTRA
Trigger: GGCACGAGTACTGAGCCATCAAGATGATACGGCTTT...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGATAATTCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR TCA 90 bp TTTCCTTCCATTCAGCAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTTAAAATTTGCCCTTTaGGCAGTGCTAGAGACATCT +
Preference number: 4 (lower is better)
Translates to: FPSIQQAVHKASSDGDRSLKFAL*AVLETS
Trigger: AGATGTCTCTAGCACTGCTCAAAGGGCAAATTTTAA...GGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTGCTGAATGGAAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp TCTGTACACCATTTTGTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTCCCGCCGCGGCCACCTaGAACGAATTTAGCTCGGCT +
Preference number: 4 (lower is better)
Translates to: SVHHFVVNTRVLVFYKISPAAAT*NEFSSA
Trigger: AGCCGAGCTAAATTCGTTGCAGGTGGCCGCGGCGGG...AGAGATTTTATAGAACACAAGCACCCTCGTATTTACAACAAAATGGTGTACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACCAACTGTATTTCTCCTaGTGGGTACAAATCAAATTC +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYQLYFS*WVQIKF
Trigger: GAATTTGATTTGTACCCACCAGGAGAAATACAGTTG...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR CAA 72 bp GCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTaGAAAGCACTCCACTGTAACATAATACTGTATGCC +
Preference number: 4 (lower is better)
Translates to: ASSDGDRSYEML*KALHCNIILYA
Trigger: GGCATACAGTATTATGTTACAGTGGAGTGCTTTCAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp CCACTACTCTGGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTACTTTGGATAAAAGCCGTATCATCTTaGTGGCTCAGTACTCGTGCC +
Preference number: 4 (lower is better)
Translates to: PLLWVFSCQQLVKLLLWIKAVSS*WLSTRA
Trigger: GGCACGAGTACTGAGCCATCAAGATGATACGGCTTT...TATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp GTTGATAATGGGCTCTTCATGAATGCAAGTTTCTCCACAAAACAGCATGCTGTCGAACTCCTGGTTCACTaGGAAGAGGGTACCTTCTGT +
Preference number: 4 (lower is better)
Translates to: VDNGLFMNASFSTKQHAVELLVH*EEGTFC
Trigger: ACAGAAGGTACCCTCTTCTCAGTGAACCAGGAGTTC...GACAGCATGCTGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCATTATCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAAAAACGTGCACCACAATaGATAAAAATCCACGTTGAG +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQKRAPQ*IKIHVE
Trigger: CTCAACGTGGATTTTTATTCATTGTGGTGCACGTTT...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp TCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGAAAGCACTCCACTGTAACAAAGGATGCCAACTGTaGTTCCAGACCTTTACAAAC +
Preference number: 4 (lower is better)
Translates to: SSDGDRSYEMLLKALHCNKGCQL*FQTFTN
Trigger: GTTTGTAAAGGTCTGGAATCACAGTTGGCATCCTTT...GTTACAGTGGAGTGCTTTCAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp AACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAATGGAGAGAAGAGACCTaGATAAAGGATGCCAACTGT +
Preference number: 4 (lower is better)
Translates to: NCRLYPCSAPILSVRWREWREET*IKDANC
Trigger: ACAGTTGGCATCCTTTATTCAGGTCTCTTCTCTCCA...TTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGAACAGATCAAACCACTaGTGTTTTGTAACAGATTCC +
Preference number: 4 (lower is better)
Translates to: QAVHKASSDGDRSYEMLLNRSNH*CFVTDS
Trigger: GGAATCTGTTACAAAACAGCAGTGGTTTGATCTGTT...CAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAAATCCCAAAGACAGACTaGATGCACATCCGAAAACAG +
Preference number: 4 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQIPKTD*MHIRKQ
Trigger: CTGTTTTCGGATGTGCATGCAGTCTGTCTTTGGGAT...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp ACTTACTCCGGCAACGAGATGGCAACACAAGTTAACATTTTCCAGATGGGATGTAGCTGCTACCATATCTaGCAGGCCAGCACTAATGAT +
Preference number: 4 (lower is better)
Translates to: TYSGNEMATQVNIFQMGCSCYHI*QASTND
Trigger: ATCATTAGTGCTGGCCTGGCAGATATGGTAGCAGCT...ACATCCCATCTGGAAAATGTTAACTTGTGTTGCCATCTCGTTGCCGGAGTAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAGCATCATTAACAACTaGTTTATACGCCTTATCTCT +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYSIINN*FIRLIS
Trigger: AGAGATAAGGCGTATAAAGCAGTTGTTAATGATGCT...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAACTTTACAACTTTCTaGCCAAGCACTCCAAAATTT +
Preference number: 4 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYNFTTF*PSTPKF
Trigger: AAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTT...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp GTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTCTGTTGAATCCAAGTCTCTTCTCCCCTACATaGTCACCGGAGCTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: VVNTRVLVFYKISLLNPSLFSPT*SPELPH
Trigger: GTGGGGAAGCTCCGGTGACCATGTAGGGGAGAAGAG...ACTTGGATTCAACAGAGAGATTTTATAGAACACAAGCACCCTCGTATTTACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAACTGATGAATTTTTGCTaGGCCTTTATCATCCCAAAG +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQLMNFC*AFIIPK
Trigger: CTTTGGGATGATAAAGGCCCAGCAAAAATTCATCAG...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAACTCTTGATCATGCCTTaGCACTCAGCTAAGATAGTC +
Preference number: 4 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQLLIMP*HSAKIV
Trigger: GACTATCTTAGCTGAGTGCCAAGGCATGATCAAGAG...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAAATAAAATCTCTCTGTTaGATCCAAGTATGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQIKSLC*IQVCLL
Trigger: GAGAAGGCATACTTGGATTCAACAGAGAGATTTTAT...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAACAGTGCATGAATATCTaGAGATCCTTCCTTGTGCAA +
Preference number: 4 (lower is better)
Translates to: NCRLYPCSAPILSVRWREQCMNI*RSFLVQ
Trigger: TTGCACAAGGAAGGATCTTCAGATATTCATGCACTG...TTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACAATAAAAATCCACGTTaGGCCATTCTTTCCTCAAGG +
Preference number: 4 (lower is better)
Translates to: QVISLLGTNFKCTLERRDNKNPR*AILSSR
Trigger: CCTTGAGGAAAGAATGGCTCAACGTGGATTTTTATT...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAAAACAGATCAAACCACTaGTGTTTTGTAACAGATTCC +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQNRSNH*CFVTDS
Trigger: GGAATCTGTTACAAAACAGCAGTGGTTTGATCTGTT...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGAATAGTTTCAGCAGCTaGTACCATATCTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: PFPNVALTSSLFSSKETKNSFSS*YHICQA
Trigger: GGCCTGGCAGATATGGTAGCAGCTGCTGAAACTATT...CTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp TCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACGGGTCTTTGGTTCCATaGAAACAATACAGCGAGCTG +
Preference number: 4 (lower is better)
Translates to: SAVSQCCIDQLTLFIKRNGSLVP*KQYSEL
Trigger: CAGCTCGCTGTATTGTTTGCATGGAACCAAAGACCC...GTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTCTTTCTGTAGTGAGCTaGAAACGTCCAATCAAGTTG +
Preference number: 4 (lower is better)
Translates to: NFSPTSAVSQCCIDQLTLLSVVS*KRPIKL
Trigger: CAACTTGATTGGACGTTTGCAGCTCACTACAGAAAG...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAACAAGTCTTTCAACATTaGCTCTATACCATTAGGAAC +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQQVFQH*LYTIRN
Trigger: GTTCCTAATGGTATAGAGCCAATGTTGAAAGACTTG...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACATTAAACTGAACTCCTaGTTCACTGAGAAGAGGGTA +
Preference number: 4 (lower is better)
Translates to: QVISLLGTNFKCTLERRDIKLNS*FTEKRV
Trigger: TACCCTCTTCTCAGTGAACCAGGAGTTCAGTTTAAT...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAACTGTATTTCTCCTGGTaGGTACAAATCAAATTCACT +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQLYFSW*VQIKFT
Trigger: AGTGAATTTGATTTGTACCCACCAGGAGAAATACAG...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACTTGGCATTCTTGTATTaGGACAAGCAAATACGCCAA +
Preference number: 4 (lower is better)
Translates to: QVISLLGTNFKCTLERRDLAFLY*DKQIRQ
Trigger: TTGGCGTATTTGCTTGTCCCAATACAAGAATGCCAA...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTGGGTCTTTGGTTCCATaGAAACAATACAGCGAGCTG +
Preference number: 4 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTGSLVP*KQYSEL
Trigger: CAGCTCGCTGTATTGTTTGCATGGAACCAAAGACCC...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAAGCCGTTTCCCAATGTTaGATTGACCAGCTCACTCTT +
Preference number: 4 (lower is better)
Translates to: PAQTLQLSAQALQNLGSKAVSQC*IDQLTL
Trigger: AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGC...TTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp TCTGTACACCATTTTGTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTGGAGCCGACCTGACTTaGAAGAGGAAGCATCGACTC +
Preference number: 4 (lower is better)
Translates to: SVHHFVVNTRVLVFYKISGADLT*KRKHRL
Trigger: GAGTCGATGCTTCCTCTTCCAAGTCAGGTCGGCTCC...AGAGATTTTATAGAACACAAGCACCCTCGTATTTACAACAAAATGGTGTACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAACCATGTTCTTTAACTTaGACTCTCGCGAGACGACGC +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKPCSLT*TLARRR
Trigger: GCGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGG...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp AGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACAAATCAATTTGTAACAGATTCCTaGCGTAAAAGCTTCAAAACA +
Preference number: 4 (lower is better)
Translates to: RTPPSPFPTVFLLVGTNQFVTDS*RKSFKT
Trigger: TGTTTTGAAGCTTTTACGCCAGGAATCTGTTACAAA...TTGATTTGTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp AACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAACTGATGAATTTTTGCTaGGCCTTTATCATCCCAAAG +
Preference number: 4 (lower is better)
Translates to: NCRLYPCSAPILSVRWRELMNFC*AFIIPK
Trigger: CTTTGGGATGATAAAGGCCCAGCAAAAATTCATCAG...TTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACCAAGTCTTTCAACATTaGCTCTATACCATTAGGAAC +
Preference number: 4 (lower is better)
Translates to: QVISLLGTNFKCTLERRDQVFQH*LYTIRN
Trigger: GTTCCTAATGGTATAGAGCCAATGTTGAAAGACTTG...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp AACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCAGAACAGGCATTTaGCTATACTCAGCAAAACTC +
Preference number: 4 (lower is better)
Translates to: NFSPTSAVSQCCIDQLTLFRTGI*LYSAKL
Trigger: GAGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAA...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
3UTR CAA 72 bp ACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATaGACCAGCTCACTCTTTTCATCAAAAGAAACCAAG +
Preference number: 4 (lower is better)
Translates to: TSHLHLPFPNVA*TSSLFSSKETK
Trigger: CTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTACTCCAATAACCAGCTaGGAATCAAAAGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTTPITS*ESKASP
Trigger: GGGAGAAGCTTTTGATTCTCAGCTGGTTATTGGAGT...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTTTACACAGCATTCCATaGGTGCTTCAACGGAGTTAC +
Preference number: 4 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTLHSIP*VLQRSY
Trigger: GTAACTCCGTTGAAGCACTCATGGAATGCTGTGTAA...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCAGTTTCATTTCTCTTaGTCATGCCTTGGCACTCAG +
Preference number: 4 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTQFHFS*SCLGTQ
Trigger: CTGAGTGCCAAGGCATGATCAAGAGAAATGAAACTG...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp CCACTACTCTGGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTACTTTGGATAAGTCTTTGGGTGAGTTaGCTTGAGGTTCATACAACA +
Preference number: 4 (lower is better)
Translates to: PLLWVFSCQQLVKLLLWISLWVS*LEVHTT
Trigger: TGTTGTATGAACCTCAAGTCAACTCACCCAAAGACT...TATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp CCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGAGTCTTTGGGTGAGTTaGCTTGAGGTTCATACAACA +
Preference number: 4 (lower is better)
Translates to: PFPNVALTSSLFSSKETKSLWVS*LEVHTT
Trigger: TGTTGTATGAACCTCAAGTCAACTCACCCAAAGACT...CTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTACCCCTAGGTGACTaGTTCAAACCTGAGGCTACA +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKLPLGD*FKPEAT
Trigger: TGTAGCCTCAGGTTTGAATCAGTCACCTAGGGGTAA...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp TCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACTCCCAGTCACTTACATaGGAACAGAAAAACCAGCTT +
Preference number: 4 (lower is better)
Translates to: SAVSQCCIDQLTLFIKRNSQSLT*EQKNQL
Trigger: AAGCTGGTTTTTCTGTTCTCATGTAAGTGACTGGGA...GTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp TCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACCAAAGACAGACTGCATaGACATCCGAAAACAGATCA +
Preference number: 4 (lower is better)
Translates to: SAVSQCCIDQLTLFIKRNQRQTA*TSENRS
Trigger: TGATCTGTTTTCGGATGTGCATGCAGTCTGTCTTTG...GTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAACTCGTGCCTGTGCTTaGTTAATAAACTCAAGAATA +
Preference number: 4 (lower is better)
Translates to: NCRLYPCSAPILSVRWRETRACA*LINSRI
Trigger: TATTCTTGAGTTTATTAAGCAAGCACAGGCACGAGT...TTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp GCTGAATTATCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTATGTACCAGCTTCATTaGACTATCTTGGAGTCTGTT +
Preference number: 4 (lower is better)
Translates to: AELSTSAVSQCCIDQLTLMYQLH*TILESV
Trigger: AACAGACTCCAAGATAGTGCAATGAAGCTGGTACAT...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGATAATTCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR GCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAAAGCTGCTACCATATCTaGCAGGCCAGCACTAATGAT +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKSCYHI*QASTND
Trigger: ATCATTAGTGCTGGCCTGGCAGATATGGTAGCAGCT...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAACTTCTCACCTACATCTaGCGTTTCCCAATGTTGCAT +
Preference number: 4 (lower is better)
Translates to: PAQTLQLSAQALQNLGSKLLTYI*RFPMLH
Trigger: ATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAG...TTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp TCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGAAAGCACTCCACTGTAACTACATTTACAGTATTTaGTGCTGTTCATTCCCCAAA +
Preference number: 4 (lower is better)
Translates to: SSDGDRSYEMLLKALHCNYIYSI*CCSFPK
Trigger: TTTGGGGAATGAACAGCAGCAAATACTGTAAATGTA...GTTACAGTGGAGTGCTTTCAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp GCTGAATTATCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCTCTCTGGGTCTTTaGTTCCATGCAAACAATACA +
Preference number: 4 (lower is better)
Translates to: AELSTSAVSQCCIDQLTLFSLGL*FHANNT
Trigger: TGTATTGTTTGCATGGAACCAAAGACCCAGAGAGAA...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGATAATTCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR CCA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAATGTATGATAGCTTCCTaGGTTCTTAGTATTCGTAGT +
Preference number: 4 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQCMIAS*VLSIRS
Trigger: ACTACGAATACTAAGAACCCAGGAAGCTATCATACA...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp GTTGATAATGGGCTCTTCATGAATGCAAGTTTCTCCACAAAACAGCATGCTGTCACAAAACTTGCCGTTTaGGTTTTGGGAAAGCTACTA +
Preference number: 4 (lower is better)
Translates to: VDNGLFMNASFSTKQHAVTKLAV*VLGKLL
Trigger: TAGTAGCTTTCCCAAAACTCAAACGGCAAGTTTTGT...GACAGCATGCTGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCATTATCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp TCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACTGTAAAGTCTTTGGGTaGGTTGACTTGAGGTTCATA +
Preference number: 4 (lower is better)
Translates to: SAVSQCCIDQLTLFIKRNCKVFG*VDLRFI
Trigger: TATGAACCTCAAGTCAACTCACCCAAAGACTTTACA...GTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp GTTGATAATGGGCTCTTCATGAATGCAAGTTTCTCCACAAAACAGCATGCTGTCTGTAAAGTCTTTGGGTaGGTTGACTTGAGGTTCATA +
Preference number: 4 (lower is better)
Translates to: VDNGLFMNASFSTKQHAVCKVFG*VDLRFI
Trigger: TATGAACCTCAAGTCAACTCACCCAAAGACTTTACA...GACAGCATGCTGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCATTATCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp ATCCACGTTGAGCCATTCTTTCCTCAAGGGGAATCAATTTTCTCTTTCAAGTTGCAGTGCATGAATATCTaGAGATCCTTCCTTGTGCAA +
Preference number: 4 (lower is better)
Translates to: IHVEPFFPQGESIFSFKLQCMNI*RSFLVQ
Trigger: TTGCACAAGGAAGGATCTTCAGATATTCATGCACTG...CAACTTGAAAGAGAAAATTGATTCCCCTTGAGGAAAGAATGGCTCAACGTGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp GTTGATAATGGGCTCTTCATGAATGCAAGTTTCTCCACAAAACAGCATGCTGTCGCATTTTTCAGTGCATaGATATCTGAAGATCCTTCC +
Preference number: 4 (lower is better)
Translates to: VDNGLFMNASFSTKQHAVAFFSA*ISEDPS
Trigger: GGAAGGATCTTCAGATATTCATGCACTGAAAAATGC...GACAGCATGCTGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCATTATCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAAGCATCATTAACAACTaGTTTATACGCCTTATCTCT +
Preference number: 4 (lower is better)
Translates to: NCRLYPCSAPILSVRWRESIINN*FIRLIS
Trigger: AGAGATAAGGCGTATAAAGCAGTTGTTAATGATGCT...TTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTCTTCTGATGTATTTGTaGTCTATTAGCCACTCTATT +
Preference number: 4 (lower is better)
Translates to: NFSPTSAVSQCCIDQLTLLLMYL*SISHSI
Trigger: AATAGAGTGGCTAATAGAGCACAAATACATCAGAAG...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp CCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAACTCTGGGTATTCAGTTaGCAGCAACTAGTTAAGTTG +
Preference number: 4 (lower is better)
Translates to: PAQTLQLSAQALQNLGSKLWVFS*QQLVKL
Trigger: CAACTTAACTAGTTGCTGGCAACTGAATACCCAGAG...TTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp CCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATGCAGGTTATATCCCTaGTCGGCACCAATTTTAAGT +
Preference number: 4 (lower is better)
Translates to: PAQTLQLSAQALQNLGSKCRLYP*SAPILS
Trigger: ACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCA...TTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGTTCTTTTCACTTAACTaGAGGTTATATCCCTGCTCG +
Preference number: 4 (lower is better)
Translates to: PFPNVALTSSLFSSKETKFFSLN*RLYPCS
Trigger: CGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAA...CTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp TCTGTACACCATTTTGTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTCCATGTTCTTTAACTTaGACTCTCGCGAGACGACGC +
Preference number: 4 (lower is better)
Translates to: SVHHFVVNTRVLVFYKISPCSLT*TLARRR
Trigger: GCGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGG...AGAGATTTTATAGAACACAAGCACCCTCGTATTTACAACAAAATGGTGTACAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CCA 90 bp TGGCATTCTTGTATTGGGACAAGCAAATACGCCAATGCTGAATTATCTACATCTCTCTTGATCATGCCTTaGCACTCAGCTAAGATAGTC +
Preference number: 4 (lower is better)
Translates to: WHSCIGTSKYANAELSTSLLIMP*HSAKIV
Trigger: GACTATCTTAGCTGAGTGCCAAGGCATGATCAAGAG...AGATGTAGATAATTCAGCATTGGCGTATTTGCTTGTCCCAATACAAGAATGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR CCA 90 bp CCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGTTCTCTCTGGGTCTTTaGTTCCATGCAAACAATACA +
Preference number: 4 (lower is better)
Translates to: PFPNVALTSSLFSSKETKFSLGL*FHANNT
Trigger: TGTATTGTTTGCATGGAACCAAAGACCCAGAGAGAA...CTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp ATCCACGTTGAGCCATTCTTTCCTCAAGGGGAATCAATTTTCTCTTTCAAGTTGTCCTGTTTCCTCCTTTaGCATTCTTGTATTGGGACA +
Preference number: 4 (lower is better)
Translates to: IHVEPFFPQGESIFSFKLSCFLL*HSCIGT
Trigger: TGTCCCAATACAAGAATGCCAAAGGAGGAAACAGGA...CAACTTGAAAGAGAAAATTGATTCCCCTTGAGGAAAGAATGGCTCAACGTGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp CCAATTTCCTATAAGTTTCAGAACAGGCATTTGGCTATACTCAGCAAAACTCTAACTCCAATAACCAGCTaGGAATCAAAAGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: PISYKFQNRHLAILSKTLTPITS*ESKASP
Trigger: GGGAGAAGCTTTTGATTCTCAGCTGGTTATTGGAGT...TAGAGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAACTTATAGGAAATTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp CGGAGTTACATTCTCGTCTTGTTTCTAAATAACGTAGTGCTCGTTTTTCTTCTTACTCCAATAACCAGCTaGGAATCAAAAGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: RSYILVLFLNNVVLVFLLTPITS*ESKASP
Trigger: GGGAGAAGCTTTTGATTCTCAGCTGGTTATTGGAGT...AAGAAGAAAAACGAGCACTACGTTATTTAGAAACAAGACGAGAATGTAACTCCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR TCA 90 bp ATCCACGTTGAGCCATTCTTTCCTCAAGGGGAATCAATTTTCTCTTTCAAGTTGGATAGTCTCTTTAAATaGTGTCACCAGGGCATTTAC +
Preference number: 4 (lower is better)
Translates to: IHVEPFFPQGESIFSFKLDSLFK*CHQGIY
Trigger: GTAAATGCCCTGGTGACATCATTTAAAGAGACTATC...CAACTTGAAAGAGAAAATTGATTCCCCTTGAGGAAAGAATGGCTCAACGTGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp CCAATTTCCTATAAGTTTCAGAACAGGCATTTGGCTATACTCAGCAAAACTCTACAGTTTCATTTCTCTTaGTCATGCCTTGGCACTCAG +
Preference number: 4 (lower is better)
Translates to: PISYKFQNRHLAILSKTLQFHFS*SCLGTQ
Trigger: CTGAGTGCCAAGGCATGATCAAGAGAAATGAAACTG...TAGAGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAACTTATAGGAAATTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp ATCCACGTTGAGCCATTCTTTCCTCAAGGGGAATCAATTTTCTCTTTCAAGTTGAATCGTGGATCATCTTaGAAAGCTTCTTTGACGAGT +
Preference number: 4 (lower is better)
Translates to: IHVEPFFPQGESIFSFKLNRGSS*KASLTS
Trigger: ACTCGTCAAAGAAGCTTTTCAAGATGATCCACGATT...CAACTTGAAAGAGAAAATTGATTCCCCTTGAGGAAAGAATGGCTCAACGTGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp CAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATCAAATACGCCAATGCTaGATTATCTACATCTGCCGT +
Preference number: 4 (lower is better)
Translates to: QHKLYNFLPKHSKIWVLNQIRQC*IIYICR
Trigger: ACGGCAGATGTAGATAATTCAGCATTGGCGTATTTG...ATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR GCA 90 bp CCAATTTCCTATAAGTTTCAGAACAGGCATTTGGCTATACTCAGCAAAACTCTAATCCCAAAGACAGACTaGATGCACATCCGAAAACAG +
Preference number: 4 (lower is better)
Translates to: PISYKFQNRHLAILSKTLIPKTD*MHIRKQ
Trigger: CTGTTTTCGGATGTGCATGCAGTCTGTCTTTGGGAT...TAGAGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAACTTATAGGAAATTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp CCACTACTCTGGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTACTTTGGATACACTTCTTTAAGCTTTaGTTCAATCTCTTCAGAGGT +
Preference number: 4 (lower is better)
Translates to: PLLWVFSCQQLVKLLLWIHFFKL*FNLFRG
Trigger: ACCTCTGAAGAGATTGAAGCAAAGCTTAAAGAAGTG...TATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp TGGCATTCTTGTATTGGGACAAGCAAATACGCCAATGCTGAATTATCTACATCTCTTTCTGTAGTGAGCTaGAAACGTCCAATCAAGTTG +
Preference number: 4 (lower is better)
Translates to: WHSCIGTSKYANAELSTSLSVVS*KRPIKL
Trigger: CAACTTGATTGGACGTTTGCAGCTCACTACAGAAAG...AGATGTAGATAATTCAGCATTGGCGTATTTGCTTGTCCCAATACAAGAATGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR GCA 90 bp ATCCACGTTGAGCCATTCTTTCCTCAAGGGGAATCAATTTTCTCTTTCAAGTTGTGGGCTCTTCATGAATaGAAGTTTCTCCACAAAACA +
Preference number: 4 (lower is better)
Translates to: IHVEPFFPQGESIFSFKLWALHE*KFLHKT
Trigger: TGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCA...CAACTTGAAAGAGAAAATTGATTCCCCTTGAGGAAAGAATGGCTCAACGTGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp TTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACAGCGAGCTGAAACGTaGTTACCTCCAAATCATATT +
Preference number: 4 (lower is better)
Translates to: FFSLNCRLYPCSAPILSVQRAET*LPPNHI
Trigger: AATATGATTTGGAGGTAACCACGTTTCAGCTCGCTG...TACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAACAGCGAGCTGAAACGTaGTTACCTCCAAATCATATT +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKQRAET*LPPNHI
Trigger: AATATGATTTGGAGGTAACCACGTTTCAGCTCGCTG...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp CCACTACTCTGGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTACTTTGGATACTGTATTTCTCCTGGTaGGTACAAATCAAATTCACT +
Preference number: 4 (lower is better)
Translates to: PLLWVFSCQQLVKLLLWILYFSW*VQIKFT
Trigger: AGTGAATTTGATTTGTACCCACCAGGAGAAATACAG...TATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp CAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATTCCTGTTTCCTCCTTTaGCATTCTTGTATTGGGACA +
Preference number: 4 (lower is better)
Translates to: QHKLYNFLPKHSKIWVLNSCFLL*HSCIGT
Trigger: TGTCCCAATACAAGAATGCCAAAGGAGGAAACAGGA...ATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR CAA 72 bp CTGAATTATCTACATCTGCCGTTTCCCAATGTTGCATaGACCAGCTCACTCTTTTCATCAAAAGAAACCAAG +
Preference number: 4 (lower is better)
Translates to: LNYLHLPFPNVA*TSSLFSSKETK
Trigger: CTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGATAATTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR TCA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCTTACACAGCATTCCATaGGTGCTTCAACGGAGTTAC +
Preference number: 4 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVLHSIP*VLQRSY
Trigger: GTAACTCCGTTGAAGCACTCATGGAATGCTGTGTAA...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAAGATAGTCTCTTTAAATaGTGTCACCAGGGCATTTAC +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKDSLFK*CHQGIY
Trigger: GTAAATGCCCTGGTGACATCATTTAAAGAGACTATC...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp TGGCATTCTTGTATTGGGACAAGCAAATACGCCAATGCTGAATTATCTACATCTAATCGTGGATCATCTTaGAAAGCTTCTTTGACGAGT +
Preference number: 4 (lower is better)
Translates to: WHSCIGTSKYANAELSTSNRGSS*KASLTS
Trigger: ACTCGTCAAAGAAGCTTTTCAAGATGATCCACGATT...AGATGTAGATAATTCAGCATTGGCGTATTTGCTTGTCCCAATACAAGAATGCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR TCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAAATAATGGGCTCTTCATaGATGCAAGTTTCTCCACAA +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKIMGSS*MQVSPQ
Trigger: TTGTGGAGAAACTTGCATTCATGAAGAGCCCATTAT...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp CATTGTGTAAAGAACTTTCGCCATTCAACAATATATGCTTTTAGCAAAGCCGTAAAAGCCGTATCATCTTaGTGGCTCAGTACTCGGAAA +
Preference number: 4 (lower is better)
Translates to: HCVKNFRHSTIYAFSKAVKAVSS*WLSTRK
Trigger: TTTCCGAGTACTGAGCCATCAAGATGATACGGCTTT...TACGGCTTTGCTAAAAGCATATATTGTTGAATGGCGAAAGTTCTTTACACAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR GCA 90 bp CAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATACGCCTTATCTCTTaGAGTAAGAAATCGTGGATC +
Preference number: 4 (lower is better)
Translates to: QHKLYNFLPKHSKIWVLNIRLIS*SKKSWI
Trigger: GATCCACGATTTCTTACTGCAAGAGATAAGGCGTAT...ATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp GTTGATAATGGGCTCTTCATGAATGCAAGTTTCTCCACAAAACAGCATGCTGTCTCATACAACAAAACTTaGCGTTTGAGTTTTGGGAAA +
Preference number: 4 (lower is better)
Translates to: VDNGLFMNASFSTKQHAVSYNKT*RLSFGK
Trigger: TTTCCCAAAACTCAAACGGCAAGTTTTGTTGTATGA...GACAGCATGCTGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCATTATCAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATGGGCTCTTCATGAATaGAAGTTTCTCCACAAAACA +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKWALHE*KFLHKT
Trigger: TGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCA...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTCATCAAAAGAAACCAAGTACATTTACAGTATTTaGTGCTGTTCATTCCCCAAA +
Preference number: 4 (lower is better)
Translates to: PFPNVALTSSLFSSKETKYIYSI*CCSFPK
Trigger: TTTGGGGAATGAACAGCAGCAAATACTGTAAATGTA...CTTGGTTTCTTTTGATGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAACGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp TGGCATTCTTGTATTGGGACAAGCAAATACGCCAATGCTGAATTATCTACATCTTTCTTTTCACTTAACTaGAGGTTATATCCCTGCTCG +
Preference number: 4 (lower is better)
Translates to: WHSCIGTSKYANAELSTSFFSLN*RLYPCS
Trigger: CGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAA...AGATGTAGATAATTCAGCATTGGCGTATTTGCTTGTCCCAATACAAGAATGCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR CCA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTTGCAGTAAGAAATCGTaGATCATCTTGAAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTCSKKS*IILKSF
Trigger: GAAGCTTTTCAAGATGATCCACGATTTCTTACTGCA...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR TCA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCAAAGGATGCCAACTGTaGTTCCAGACCTTTACAAAC +
Preference number: 4 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVKGCQL*FQTFTN
Trigger: GTTTGTAAAGGTCTGGAATCACAGTTGGCATCCTTT...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAAACTCGTGCCTGTGCTTaGTTAATAAACTCAAGAATA +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKTRACA*LINSRI
Trigger: TATTCTTGAGTTTATTAAGCAAGCACAGGCACGAGT...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp CAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATTGCAGTAAGAAATCGTaGATCATCTTGAAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: QHKLYNFLPKHSKIWVLNCSKKS*IILKSF
Trigger: GAAGCTTTTCAAGATGATCCACGATTTCTTACTGCA...ATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR CAA 72 bp AATACGAGGGTGCTTGTGTTCTATAAAATCTCTCTGTaGAATCCAAGTATGCCTTCTCAAAATTGTCCCTAT +
Preference number: 4 (lower is better)
Translates to: NTRVLVFYKISL*NPSMPSQNCPY
Trigger: ATAGGGACAATTTTGAGAAGGCATACTTGGATTCAACAGAGAGATTTTATAGAACACAAGCACCCTCGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR TCA 90 bp CCAATTTCCTATAAGTTTCAGAACAGGCATTTGGCTATACTCAGCAAAACTCTAATAAAATCTCTCTGTTaGATCCAAGTATGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: PISYKFQNRHLAILSKTLIKSLC*IQVCLL
Trigger: GAGAAGGCATACTTGGATTCAACAGAGAGATTTTAT...TAGAGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAACTTATAGGAAATTGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR TCA 90 bp CGGAGTTACATTCTCGTCTTGTTTCTAAATAACGTAGTGCTCGTTTTTCTTCTTATAAAATCTCTCTGTTaGATCCAAGTATGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: RSYILVLFLNNVVLVFLLIKSLC*IQVCLL
Trigger: GAGAAGGCATACTTGGATTCAACAGAGAGATTTTAT...AAGAAGAAAAACGAGCACTACGTTATTTAGAAACAAGACGAGAATGTAACTCCG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR TCA 90 bp CTGTACATTTACAGTATTTGCTGCTGTTCATTCCCCAAAATACAATTAGGACATATAATGGGCTCTTCATaGATGCAAGTTTCTCCACAA +
Preference number: 4 (lower is better)
Translates to: LYIYSICCCSFPKIQLGHIMGSS*MQVSPQ
Trigger: TTGTGGAGAAACTTGCATTCATGAAGAGCCCATTAT...ATGTCCTAATTGTATTTTGGGGAATGAACAGCAGCAAATACTGTAAATGTACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGTAACAGATTCCTaGCGTAAAAGCTTCAAAACA +
Preference number: 4 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKFVTDS*RKSFKT
Trigger: TGTTTTGAAGCTTTTACGCCAGGAATCTGTTACAAA...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp CTGTACATTTACAGTATTTGCTGCTGTTCATTCCCCAAAATACAATTAGGACATATTAAACTGAACTCCTaGTTCACTGAGAAGAGGGTA +
Preference number: 4 (lower is better)
Translates to: LYIYSICCCSFPKIQLGHIKLNS*FTEKRV
Trigger: TACCCTCTTCTCAGTGAACCAGGAGTTCAGTTTAAT...ATGTCCTAATTGTATTTTGGGGAATGAACAGCAGCAAATACTGTAAATGTACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CCA 90 bp CTGTACATTTACAGTATTTGCTGCTGTTCATTCCCCAAAATACAATTAGGACATAAATTTCCACTACTCTaGGTATTCAGTTGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: LYIYSICCCSFPKIQLGHKFPLL*VFSCQQ
Trigger: TTGCTGGCAACTGAATACCCAGAGTAGTGGAAATTT...ATGTCCTAATTGTATTTTGGGGAATGAACAGCAGCAAATACTGTAAATGTACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp TCTGTACACCATTTTGTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTAACAGATCAAACCACTaGTGTTTTGTAACAGATTCC +
Preference number: 4 (lower is better)
Translates to: SVHHFVVNTRVLVFYKISNRSNH*CFVTDS
Trigger: GGAATCTGTTACAAAACAGCAGTGGTTTGATCTGTT...AGAGATTTTATAGAACACAAGCACCCTCGTATTTACAACAAAATGGTGTACAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR GCA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCCACTTCTTTAAGCTTTaGTTCAATCTCTTCAGAGGT +
Preference number: 4 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVHFFKL*FNLFRG
Trigger: ACCTCTGAAGAGATTGAAGCAAAGCTTAAAGAAGTG...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CCAATTTCCTATAAGTTTCAGAACAGGCATTTGGCTATACTCAGCAAAACTCTATCATACAACAAAACTTaGCGTTTGAGTTTTGGGAAA +
Preference number: 4 (lower is better)
Translates to: PISYKFQNRHLAILSKTLSYNKT*RLSFGK
Trigger: TTTCCCAAAACTCAAACGGCAAGTTTTGTTGTATGA...TAGAGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAACTTATAGGAAATTGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CCA 90 bp CGGAGTTACATTCTCGTCTTGTTTCTAAATAACGTAGTGCTCGTTTTTCTTCTTTTTGTAACAGATTCCTaGCGTAAAAGCTTCAAAACA +
Preference number: 4 (lower is better)
Translates to: RSYILVLFLNNVVLVFLLFVTDS*RKSFKT
Trigger: TGTTTTGAAGCTTTTACGCCAGGAATCTGTTACAAA...AAGAAGAAAAACGAGCACTACGTTATTTAGAAACAAGACGAGAATGTAACTCCG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CCA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCTGTATGATAGCTTCCTaGGTTCTTAGTATTCGTAGT +
Preference number: 4 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVCMIAS*VLSIRS
Trigger: ACTACGAATACTAAGAACCCAGGAAGCTATCATACA...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
3UTR CAA 72 bp GGCAAGTTTACTGCTCGTATTAAGAGTGCAACAATTTaGCTTCTGTTTTTCAGGTCTTATGTTGTGGTTTTT +
Preference number: 4 (lower is better)
Translates to: GKFTARIKSATI*LLFFRSYVVVF
Trigger: AAAAACCACAACATAAGACCTGAAAAACAGAAGCAAAATTGTTGCACTCTTAATACGAGCAGTAAACTTGCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR GCA 90 bp CTGTACATTTACAGTATTTGCTGCTGTTCATTCCCCAAAATACAATTAGGACATAATAGTGTAAGTAACTaGTCAACGTATTTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: LYIYSICCCSFPKIQLGHNSVSN*STYFSE
Trigger: CTCTGAGAAATACGTTGAGCAGTTACTTACACTATT...ATGTCCTAATTGTATTTTGGGGAATGAACAGCAGCAAATACTGTAAATGTACAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR GCA 90 bp CTGTACATTTACAGTATTTGCTGCTGTTCATTCCCCAAAATACAATTAGGACATCTTCTGATGTATTTGTaGTCTATTAGCCACTCTATT +
Preference number: 4 (lower is better)
Translates to: LYIYSICCCSFPKIQLGHLLMYL*SISHSI
Trigger: AATAGAGTGGCTAATAGAGCACAAATACATCAGAAG...ATGTCCTAATTGTATTTTGGGGAATGAACAGCAGCAAATACTGTAAATGTACAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS CCA 90 bp GCTCCCACCAGGGCCCAGGGCCCGTCGGCCCGCACCAGGGTGTGGTaGGCGCTGGAGCAGCGCGCCGACAGCGCTGACCTCGTCCCAAGC +
Preference number: 5 (lower is better)
Translates to: APTRAQGPSARTRVW*ALEQRADSADLVPS
Trigger: GCTTGGGACGAGGTCAGCGCTGTCGGCGCGCTGCTCCAGCGCCCACCACACCCTGGTGCGGGCCGACGGGCCCTGGGCCCTGGTGGGAGC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CCA 90 bp CCAGGGCCCAGGGCCCGTCGGCCCGCACCAGGGTGTGGTGGGCGCTaGAGCAGCGCGCCGACAGCGCTGACCTCGTCCCAAGCACCAGGA +
Preference number: 5 (lower is better)
Translates to: PGPRARRPAPGCGGR*SSAPTALTSSQAPG
Trigger: TCCTGGTGCTTGGGACGAGGTCAGCGCTGTCGGCGCGCTGCTCCAGCGCCCACCACACCCTGGTGCGGGCCGACGGGCCCTGGGCCCTGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS TCA 90 bp TCTCGCGAGACGACGCGAGAATTCGTGGCGCTCCCGGCCAGGCCTTaGCCGGAGGCCGGAGCTCCCACCAGGGCCCAGGGCCCGTCGGCC +
Preference number: 5 (lower is better)
Translates to: SRETTREFVALPARP*PEAGAPTRAQGPSA
Trigger: GGCCGACGGGCCCTGGGCCCTGGTGGGAGCTCCGGCCTCCGGTCAAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCGTCTCGCGAGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS TCA 90 bp CCGCACCAGGGTGTGGTGGGCGCTGGAGCAGCGCGCCGACAGCGCTaGCCTCGTCCCAAGCACCAGGAGCTTCCTCACTCTTCTCCCCTA +
Preference number: 5 (lower is better)
Translates to: PHQGVVGAGAARRQR*PRPKHQELPHSSPL
Trigger: TAGGGGAGAAGAGTGAGGAAGCTCCTGGTGCTTGGGACGAGGTCAGCGCTGTCGGCGCGCTGCTCCAGCGCCCACCACACCCTGGTGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CCA 90 bp CCATGTTCTTTAACTTGGACTCTCGCGAGACGACGCGAGAATTCGTaGCGCTCCCGGCCAGGCCTTGACCGGAGGCCGGAGCTCCCACCA +
Preference number: 5 (lower is better)
Translates to: PCSLTWTLARRRENS*RSRPGLDRRPELPP
Trigger: TGGTGGGAGCTCCGGCCTCCGGTCAAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000531427.5
ENST00000532064.5
CDS CCA 90 bp ACCGGAACGGCGAATGCTGAGAAGGTAACGGGAGCCGACCTGACTTaGAAGAGGAAGCATCGACTCCACGAGCCTCCCCGACTCCTTCGG +
Preference number: 5 (lower is better)
Translates to: TGTANAEKVTGADLT*KRKHRLHEPPRLLR
Trigger: CCGAAGGAGTCGGGGAGGCTCGTGGAGTCGATGCTTCCTCTTCCAAGTCAGGTCGGCTCCCGTTACCTTCTCAGCATTCGCCGTTCCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CCA 90 bp ACCTCGTCCCAAGCACCAGGAGCTTCCTCACTCTTCTCCCCTACATaGTCACCGGAGCTTCCCCACGCGAAAGACCTCATGCACGCGCTC +
Preference number: 5 (lower is better)
Translates to: TSSQAPGASSLFSPT*SPELPHAKDLMHAL
Trigger: GAGCGCGTGCATGAGGTCTTTCGCGTGGGGAAGCTCCGGTGACCATGTAGGGGAGAAGAGTGAGGAAGCTCCTGGTGCTTGGGACGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS TCA 90 bp GAAAGACCTCATGCACGCGCTCAGGAAGACCGGAACGGCGAATGCTaGGAAGGTAACGGGAGCCGACCTGACTTGGAAGAGGAAGCATCG +
Preference number: 5 (lower is better)
Translates to: ERPHARAQEDRNGEC*EGNGSRPDLEEEAS
Trigger: CGATGCTTCCTCTTCCAAGTCAGGTCGGCTCCCGTTACCTTCTCAGCATTCGCCGTTCCGGTCTTCCTGAGCGCGTGCATGAGGTCTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS-3UTR CAA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACGCAGCTCAGGGCATTTaGATTCAGGCTGAGTTTTTA +
Preference number: 5 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYAAQGI*IQAEFL
Trigger: TAAAAACTCAGCCTGAATCAAAATGCCCTGAGCTGC...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACCTTTCTCAGAACTTCTaGACCAGGCGCCAGCATTCA +
Preference number: 5 (lower is better)
Translates to: QVISLLGTNFKCTLERRDLSQNF*TRRQHS
Trigger: TGAATGCTGGCGCCTGGTCAAGAAGTTCTGAGAAAG...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp ATCCACGTTGAGCCATTCTTTCCTCAAGGGGAATCAATTTTCTCTTTCAAGTTGGGGAGCCGACCTGACTaGGAAGAGGAAGCATCGACT +
Preference number: 5 (lower is better)
Translates to: IHVEPFFPQGESIFSFKLGSRPD*EEEAST
Trigger: AGTCGATGCTTCCTCTTCCAAGTCAGGTCGGCTCCC...CAACTTGAAAGAGAAAATTGATTCCCCTTGAGGAAAGAATGGCTCAACGTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAACAAAGCCGTATCATCTaGATGGCTCAGTACTCGTGC +
Preference number: 5 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQQSRII*MAQYSC
Trigger: GCACGAGTACTGAGCCATCAAGATGATACGGCTTTG...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp CAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGTTTCCCAATGTTGCATaGACCAGCTCACTCTTTTCA +
Preference number: 5 (lower is better)
Translates to: QAVHKASSDGDRSYEMLLFPNVA*TSSLFS
Trigger: TGAAAAGAGTGAGCTGGTCAATGCAACATTGGGAAA...CAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp AGCAACAAGAACCCCACCCTCACCCTTCCCAACTGTATTTCTCCTGGTGGGTACTTTTCAGGTCTTATGTaGTGGTTTTTCTCTTACCCC +
Preference number: 5 (lower is better)
Translates to: SNKNPTLTLPNCISPGGYFSGLM*WFFSYP
Trigger: GGGGTAAGAGAAAAACCACAACATAAGACCTGAAAA...GTACCCACCAGGAGAAATACAGTTGGGAAGGGTGAGGGTGGGGTTCTTGTTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp CCACTACTCTGGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTACTTTGGATAGCCATGTTCTTTAACTaGGACTCTCGCGAGACGACG +
Preference number: 5 (lower is better)
Translates to: PLLWVFSCQQLVKLLLWIAMFFN*DSRETT
Trigger: CGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGGC...TATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp CAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGAACAAAACTTGCCGTTaGAGTTTTGGGAAAGCTACT +
Preference number: 5 (lower is better)
Translates to: QAVHKASSDGDRSYEMLLNKTCR*SFGKAT
Trigger: AGTAGCTTTCCCAAAACTCAAACGGCAAGTTTTGTT...CAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp CGGAGTTACATTCTCGTCTTGTTTCTAAATAACGTAGTGCTCGTTTTTCTTCTTGGGAGCCGACCTGACTaGGAAGAGGAAGCATCGACT +
Preference number: 5 (lower is better)
Translates to: RSYILVLFLNNVVLVFLLGSRPD*EEEAST
Trigger: AGTCGATGCTTCCTCTTCCAAGTCAGGTCGGCTCCC...AAGAAGAAAAACGAGCACTACGTTATTTAGAAACAAGACGAGAATGTAACTCCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CAA 90 bp AACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTCATGTACCAGCTTCATaGCACTATCTTGGAGTCTGT +
Preference number: 5 (lower is better)
Translates to: NFSPTSAVSQCCIDQLTLHVPAS*HYLGVC
Trigger: ACAGACTCCAAGATAGTGCAATGAAGCTGGTACATG...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp AACTGCAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGCAGCTCAGGGCATTTaGATTCAGGCTGAGTTTTTA +
Preference number: 5 (lower is better)
Translates to: NCRLYPCSAPILSVRWREAAQGI*IQAEFL
Trigger: TAAAAACTCAGCCTGAATCAAAATGCCCTGAGCTGC...TTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTGCAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp CAGGCAGTTCACAAAGCCTCTTCGGATGGGGACAGATCCTACGAAATGCTCTTGCAAGCACTCCAAAATTaGGGTTCTAAATATTGTCCA +
Preference number: 5 (lower is better)
Translates to: QAVHKASSDGDRSYEMLLQALQN*GSKYCP
Trigger: TGGACAATATTTAGAACCCAAATTTTGGAGTGCTTG...CAAGAGCATTTCGTAGGATCTGTCCCCATCCGAAGAGGCTTTGTGAACTGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS GCA 90 bp CTGCTCAACGTATTTCTCAGAGTCAGTAGTAATAGTTTCAGCAGCTaGTACCATATCTGCCAGGCCAGCACTAATGATATGTTCCTCCAA +
Preference number: 5 (lower is better)
Translates to: LLNVFLRVSSNSFSS*YHICQASTNDMFLQ
Trigger: TTGGAGGAACATATCATTAGTGCTGGCCTGGCAGATATGGTAGCAGCTGCTGAAACTATTACTACTGACTCTGAGAAATACGTTGAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS GCA 90 bp AAGGAAGCTCCAGGGGAAGTATTCTTTGAGCTGGGTCTTATCTCTTaGAGTAAGAAATCGTGGATCATCTTGAAAAGCTTCTTTGACGAG +
Preference number: 5 (lower is better)
Translates to: KEAPGEVFFELGLIS*SKKSWIILKSFFDE
Trigger: CTCGTCAAAGAAGCTTTTCAAGATGATCCACGATTTCTTACTGCAAGAGATAAGACCCAGCTCAAAGAATACTTCCCCTGGAGCTTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000531843.1
CDS-3UTR CAA 90 bp CGGAGTTACATTCTCGTCTTGTTTCTAAATAACGTAGTGCTCGTTTTTCTTCTTGCCATGTTCTTTAACTaGGACTCTCGCGAGACGACG +
Preference number: 5 (lower is better)
Translates to: RSYILVLFLNNVVLVFLLAMFFN*DSRETT
Trigger: CGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGGC...AAGAAGAAAAACGAGCACTACGTTATTTAGAAACAAGACGAGAATGTAACTCCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CAA 90 bp GAGGCTGGATTTTCTTTTCACTTAACTGCAGGTTATATCCCTGCTCGGCACCAATACTCGTGCCTGTGCTaGCTTAATAAACTCAAGAAT +
Preference number: 5 (lower is better)
Translates to: EAGFSFHLTAGYIPARHQYSCLC*LNKLKN
Trigger: ATTCTTGAGTTTATTAAGCAAGCACAGGCACGAGTA...TTGGTGCCGAGCAGGGATATAACCTGCAGTTAAGTGAAAAGAAAATCCAGCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp CAGGTTATATCCCTGCTCGGCACCAATTTTAAGTGTACGCTGGAGAGAAGAGACCAAGCACTCCAAAATTaGGGTTCTAAATATTGTCCA +
Preference number: 5 (lower is better)
Translates to: QVISLLGTNFKCTLERRDQALQN*GSKYCP
Trigger: TGGACAATATTTAGAACCCAAATTTTGGAGTGCTTG...GTCTCTTCTCTCCAGCGTACACTTAAAATTGGTGCCGAGCAGGGATATAACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp GTTGATAATGGGCTCTTCATGAATGCAAGTTTCTCCACAAAACAGCATGCTGTCTCCTACGAAATGCTCTaGAAAGCACTCCACTGTAAC +
Preference number: 5 (lower is better)
Translates to: VDNGLFMNASFSTKQHAVSYEML*KALHCN
Trigger: GTTACAGTGGAGTGCTTTCAAGAGCATTTCGTAGGA...GACAGCATGCTGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCATTATCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp GCTGAATTATCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTTGGCATTCTTGTATaGGGACAAGCAAATACGCCA +
Preference number: 5 (lower is better)
Translates to: AELSTSAVSQCCIDQLTLFGILV*GQANTP
Trigger: TGGCGTATTTGCTTGTCCCAATACAAGAATGCCAAA...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGATAATTCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR CAA 90 bp AACTTCTCACCTACATCTGCCGTTTCCCAATGTTGCATTGACCAGCTCACTCTTTTTAAAATTTGCCCTTaGAGCAGTGCTAGAGACATC +
Preference number: 5 (lower is better)
Translates to: NFSPTSAVSQCCIDQLTLFKICP*SSARDI
Trigger: GATGTCTCTAGCACTGCTCAAAGGGCAAATTTTAAA...AAGAGTGAGCTGGTCAATGCAACATTGGGAAACGGCAGATGTAGGTGAGAAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS TCA 90 bp ACTGAGAAGAGGGTACCTTCTGTAAAGTCTTTGGGTGAGTTGACTTaGGGTTCATACAACAAAACTTGCCGTTTGAGTTTTGGGAAAGCT +
Preference number: 5 (lower is better)
Translates to: TEKRVPSVKSLGELT*GSYNKTCRLSFGKA
Trigger: AGCTTTCCCAAAACTCAAACGGCAAGTTTTGTTGTATGAACCTCAAGTCAACTCACCCAAAGACTTTACAGAAGGTACCCTCTTCTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCGCCATGTTCTTTAACTaGGACTCTCGCGAGACGACG +
Preference number: 5 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVAMFFN*DSRETT
Trigger: CGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGGC...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTTTCCTGTTTCCTCCTTaGGCATTCTTGTATTGGGAC +
Preference number: 5 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTFLFPP*AFLYWD
Trigger: GTCCCAATACAAGAATGCCAAAGGAGGAAACAGGAA...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp GTTGATAATGGGCTCTTCATGAATGCAAGTTTCTCCACAAAACAGCATGCTGTCTACTCGTGCCTGTGCTaGCTTAATAAACTCAAGAAT +
Preference number: 5 (lower is better)
Translates to: VDNGLFMNASFSTKQHAVYSCLC*LNKLKN
Trigger: ATTCTTGAGTTTATTAAGCAAGCACAGGCACGAGTA...GACAGCATGCTGTTTTGTGGAGAAACTTGCATTCATGAAGAGCCCATTATCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCCAAAGCCGTATCATCTaGATGGCTCAGTACTCGTGC +
Preference number: 5 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVQSRII*MAQYSC
Trigger: GCACGAGTACTGAGCCATCAAGATGATACGGCTTTG...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCCTTTCTCAGAACTTCTaGACCAGGCGCCAGCATTCA +
Preference number: 5 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVLSQNF*TRRQHS
Trigger: TGAATGCTGGCGCCTGGTCAAGAAGTTCTGAGAAAG...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp CCACTACTCTGGGTATTCAGTTGCCAGCAACTAGTTAAGTTGCTACTTTGGATATTTCAGAACAGGCATTaGGCTATACTCAGCAAAACT +
Preference number: 5 (lower is better)
Translates to: PLLWVFSCQQLVKLLLWIFQNRH*AILSKT
Trigger: AGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAA...TATCCAAAGTAGCAACTTAACTAGTTGCTGGCAACTGAATACCCAGAGTAGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCTCCTTTGGCATTCTaGTATTGGGACAAGCAAATA +
Preference number: 5 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTPPLAF*YWDKQI
Trigger: TATTTGCTTGTCCCAATACAAGAATGCCAAAGGAGG...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp AATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTCCTGTTTCCTCCTTaGGCATTCTTGTATTGGGAC +
Preference number: 5 (lower is better)
Translates to: NKPFSSTNFTTFCPSTPKFLFPP*AFLYWD
Trigger: GTCCCAATACAAGAATGCCAAAGGAGGAAACAGGAA...TTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp CGGAGTTACATTCTCGTCTTGTTTCTAAATAACGTAGTGCTCGTTTTTCTTCTTCATGTACCAGCTTCATaGCACTATCTTGGAGTCTGT +
Preference number: 5 (lower is better)
Translates to: RSYILVLFLNNVVLVFLLHVPAS*HYLGVC
Trigger: ACAGACTCCAAGATAGTGCAATGAAGCTGGTACATG...AAGAAGAAAAACGAGCACTACGTTATTTAGAAACAAGACGAGAATGTAACTCCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CAA 90 bp TGGCATTCTTGTATTGGGACAAGCAAATACGCCAATGCTGAATTATCTACATCTTTTCTCTCTGGGTCTTaGGTTCCATGCAAACAATAC +
Preference number: 5 (lower is better)
Translates to: WHSCIGTSKYANAELSTSFLSGS*VPCKQY
Trigger: GTATTGTTTGCATGGAACCAAAGACCCAGAGAGAAA...AGATGTAGATAATTCAGCATTGGCGTATTTGCTTGTCCCAATACAAGAATGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000531427.5
CDS-3UTR CAA 90 bp CCAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAAAACAAAACTTGCCGTTaGAGTTTTGGGAAAGCTACT +
Preference number: 5 (lower is better)
Translates to: PAQTLQLSAQALQNLGSKNKTCR*SFGKAT
Trigger: AGTAGCTTTCCCAAAACTCAAACGGCAAGTTTTGTT...TTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp ATCCACGTTGAGCCATTCTTTCCTCAAGGGGAATCAATTTTCTCTTTCAAGTTGATTTTCTCTTTCAAGTaGTTCACGTCCTCAAGTCCT +
Preference number: 5 (lower is better)
Translates to: IHVEPFFPQGESIFSFKLIFSFK*FTSSSP
Trigger: AGGACTTGAGGACGTGAACAACTTGAAAGAGAAAAT...CAACTTGAAAGAGAAAATTGATTCCCCTTGAGGAAAGAATGGCTCAACGTGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp CAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATTTTGGCATTCTTGTATaGGGACAAGCAAATACGCCA +
Preference number: 5 (lower is better)
Translates to: QHKLYNFLPKHSKIWVLNFGILV*GQANTP
Trigger: TGGCGTATTTGCTTGTCCCAATACAAGAATGCCAAA...ATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTGTACATTTACAGTATTaGCTGCTGTTCATTCCCCAA +
Preference number: 5 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTVHLQY*LLFIPQ
Trigger: TTGGGGAATGAACAGCAGCAAATACTGTAAATGTAC...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp TCTGTACACCATTTTGTTGTAAATACGAGGGTGCTTGTGTTCTATAAAATCTCTCAAAGCCGTATCATCTaGATGGCTCAGTACTCGGAA +
Preference number: 5 (lower is better)
Translates to: SVHHFVVNTRVLVFYKISQSRII*MAQYSE
Trigger: TTCCGAGTACTGAGCCATCAAGATGATACGGCTTTG...AGAGATTTTATAGAACACAAGCACCCTCGTATTTACAACAAAATGGTGTACAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS-3UTR CAA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCCATGTACCAGCTTCATaGCACTATCTTGGAGTCTGT +
Preference number: 5 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVHVPAS*HYLGVC
Trigger: ACAGACTCCAAGATAGTGCAATGAAGCTGGTACATG...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp AGTCCAAATAAACCTTTCTCCAGCACAAACTTTACAACTTTCTGCCCAAGCACTAAGAGTGCAACAATTTaGCTTCTGTTTTTCAGGTCT +
Preference number: 5 (lower is better)
Translates to: SPNKPFSSTNFTTFCPSTKSATI*LLFFRS
Trigger: AGACCTGAAAAACAGAAGCAAAATTGTTGCACTCTT...AGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTGGAGAAAGGTTTATTTGGACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp CCAATTTCCTATAAGTTTCAGAACAGGCATTTGGCTATACTCAGCAAAACTCTACCTCCTTTGGCATTCTaGTATTGGGACAAGCAAATA +
Preference number: 5 (lower is better)
Translates to: PISYKFQNRHLAILSKTLPPLAF*YWDKQI
Trigger: TATTTGCTTGTCCCAATACAAGAATGCCAAAGGAGG...TAGAGTTTTGCTGAGTATAGCCAAATGCCTGTTCTGAAACTTATAGGAAATTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393094.7
CDS-3UTR CAA 90 bp CAGCACAAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATGTACATTTACAGTATTaGCTGCTGTTCATTCCCCAA +
Preference number: 5 (lower is better)
Translates to: QHKLYNFLPKHSKIWVLNVHLQY*LLFIPQ
Trigger: TTGGGGAATGAACAGCAGCAAATACTGTAAATGTAC...ATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTTGTGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS-3UTR CAA 90 bp AAACTTTACAACTTTCTGCCCAAGCACTCCAAAATTTGGGTTCTAAATATTGTCTTTCTCTCTGGGTCTTaGGTTCCATGCAAACAATAC +
Preference number: 5 (lower is better)
Translates to: KLYNFLPKHSKIWVLNIVFLSGS*VPCKQY
Trigger: GTATTGTTTGCATGGAACCAAAGACCCAGAGAGAAA...GACAATATTTAGAACCCAAATTTTGGAGTGCTTGGGCAGAAAGTTGTAAAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS CCA 72 bp AGGGCCCAGGGCCCGTCGGCCCGCACCAGGGTGTGGTaGGCGCTGGAGCAGCGCGCCGACAGCGCTGACCTC +
Preference number: 6 (lower is better)
Translates to: RAQGPSARTRVW*ALEQRADSADL
Trigger: GAGGTCAGCGCTGTCGGCGCGCTGCTCCAGCGCCCACCACACCCTGGTGCGGGCCGACGGGCCCTGGGCCCT
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CAA 90 bp CTCTCGCGAGACGACGCGAGAATTCGTGGCGCTCCCGGCCAGGCCTaGACCGGAGGCCGGAGCTCCCACCAGGGCCCAGGGCCCGTCGGC +
Preference number: 6 (lower is better)
Translates to: LSRDDARIRGAPGQA*TGGRSSHQGPGPVG
Trigger: GCCGACGGGCCCTGGGCCCTGGTGGGAGCTCCGGCCTCCGGTCAAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCGTCTCGCGAGAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS TCA 72 bp ACGACGCGAGAATTCGTGGCGCTCCCGGCCAGGCCTTaGCCGGAGGCCGGAGCTCCCACCAGGGCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: TTREFVALPARP*PEAGAPTRAQG
Trigger: GCCCTGGGCCCTGGTGGGAGCTCCGGCCTCCGGTCAAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCGT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CAA 72 bp GACGACGCGAGAATTCGTGGCGCTCCCGGCCAGGCCTaGACCGGAGGCCGGAGCTCCCACCAGGGCCCAGGG +
Preference number: 6 (lower is better)
Translates to: DDARIRGAPGQA*TGGRSSHQGPG
Trigger: CCCTGGGCCCTGGTGGGAGCTCCGGCCTCCGGTCAAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCGTC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CCA 72 bp TTAACTTGGACTCTCGCGAGACGACGCGAGAATTCGTaGCGCTCCCGGCCAGGCCTTGACCGGAGGCCGGAG +
Preference number: 6 (lower is better)
Translates to: LTWTLARRRENS*RSRPGLDRRPE
Trigger: CTCCGGCCTCCGGTCAAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCGTCTCGCGAGAGTCCAAGTTAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000531427.5
ENST00000532064.5
CDS GCA 72 bp CATGGTCACCGGAGCTTCCCCACGCGAAAGACCTCATaGACGCGCTCAGGAAGACCGGAACGGCGAATGCTG +
Preference number: 6 (lower is better)
Translates to: HGHRSFPTRKTS*TRSGRPERRML
Trigger: CAGCATTCGCCGTTCCGGTCTTCCTGAGCGCGTGCATGAGGTCTTTCGCGTGGGGAAGCTCCGGTGACCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS TCA 72 bp CATGCACGCGCTCAGGAAGACCGGAACGGCGAATGCTaGGAAGGTAACGGGAGCCGACCTGACTTGGAAGAG +
Preference number: 6 (lower is better)
Translates to: HARAQEDRNGEC*EGNGSRPDLEE
Trigger: CTCTTCCAAGTCAGGTCGGCTCCCGTTACCTTCTCAGCATTCGCCGTTCCGGTCTTCCTGAGCGCGTGCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CCA 72 bp GCGAATGCTGAGAAGGTAACGGGAGCCGACCTGACTTaGAAGAGGAAGCATCGACTCCACGAGCCTCCCCGA +
Preference number: 6 (lower is better)
Translates to: ANAEKVTGADLT*KRKHRLHEPPR
Trigger: TCGGGGAGGCTCGTGGAGTCGATGCTTCCTCTTCCAAGTCAGGTCGGCTCCCGTTACCTTCTCAGCATTCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CCA 72 bp CAAGCACCAGGAGCTTCCTCACTCTTCTCCCCTACATaGTCACCGGAGCTTCCCCACGCGAAAGACCTCATG +
Preference number: 6 (lower is better)
Translates to: QAPGASSLFSPT*SPELPHAKDLM
Trigger: CATGAGGTCTTTCGCGTGGGGAAGCTCCGGTGACCATGTAGGGGAGAAGAGTGAGGAAGCTCCTGGTGCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000532064.5
CDS CAA 90 bp GAACCTTTATTCTTTAACAGATTAGACGTCGCCATGTTCTTTAACTaGGACTCTCGCGAGACGACGCGAGAATTCGTGGCGCTCCCGGCC +
Preference number: 6 (lower is better)
Translates to: EPLFFNRLDVAMFFN*DSRETTREFVALPA
Trigger: GGCCGGGAGCGCCACGAATTCTCGCGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGGCGACGTCTAATCTGTTAAAGAATAAAGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000531427.5
ENST00000532064.5
CDS CAA 90 bp GTGGAGGGAGGCAGGACATCAAGGAAGCTCCAGGGGAAGTATTCTTaGAGCTGGGTCTTATCTCTTGCAGTAAGAAATCGTGGATCATCT +
Preference number: 6 (lower is better)
Translates to: VEGGRTSRKLQGKYS*SWVLSLAVRNRGSS
Trigger: AGATGATCCACGATTTCTTACTGCAAGAGATAAGACCCAGCTCAAAGAATACTTCCCCTGGAGCTTCCTTGATGTCCTGCCTCCCTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000531843.1
CDS CAA 72 bp TTCTTTAACAGATTAGACGTCGCCATGTTCTTTAACTaGGACTCTCGCGAGACGACGCGAGAATTCGTGGCG +
Preference number: 6 (lower is better)
Translates to: FFNRLDVAMFFN*DSRETTREFVA
Trigger: CGCCACGAATTCTCGCGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGGCGACGTCTAATCTGTTAAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000531427.5
ENST00000532064.5
CDS CAA 72 bp GGCAGGACATCAAGGAAGCTCCAGGGGAAGTATTCTTaGAGCTGGGTCTTATCTCTTGCAGTAAGAAATCGT +
Preference number: 6 (lower is better)
Translates to: GRTSRKLQGKYS*SWVLSLAVRNR
Trigger: ACGATTTCTTACTGCAAGAGATAAGACCCAGCTCAAAGAATACTTCCCCTGGAGCTTCCTTGATGTCCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000531843.1
CDS GCA 72 bp AATTTTTGCTGGGCCTTTATCATCCCAAAGACAGACTaGATGCACATCCGAAAACAGATCAAACCACTGCTG +
Preference number: 6 (lower is better)
Translates to: NFCWAFIIPKTD*MHIRKQIKPLL
Trigger: CAGCAGTGGTTTGATCTGTTTTCGGATGTGCATGCAGTCTGTCTTTGGGATGATAAAGGCCCAGCAAAAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000531427.5
CDS CCA 72 bp ACATCAAGGAAGCTCCAGGGGAAGTATTCTTTGAGCTaGGTCTTATCTCTTGCAGTAAGAAATCGTGGATCA +
Preference number: 6 (lower is better)
Translates to: TSRKLQGKYSLS*VLSLAVRNRGS
Trigger: TGATCCACGATTTCTTACTGCAAGAGATAAGACCCAGCTCAAAGAATACTTCCCCTGGAGCTTCCTTGATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000531843.1
CDS GCA 72 bp GTATTTCTCAGAGTCAGTAGTAATAGTTTCAGCAGCTaGTACCATATCTGCCAGGCCAGCACTAATGATATG +
Preference number: 6 (lower is better)
Translates to: VFLRVSSNSFSS*YHICQASTNDM
Trigger: CATATCATTAGTGCTGGCCTGGCAGATATGGTAGCAGCTGCTGAAACTATTACTACTGACTCTGAGAAATAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS GCA 72 bp CCAGGGGAAGTATTCTTTGAGCTGGGTCTTATCTCTTaGAGTAAGAAATCGTGGATCATCTTGAAAAGCTTC +
Preference number: 6 (lower is better)
Translates to: PGEVFFELGLIS*SKKSWIILKSF
Trigger: GAAGCTTTTCAAGATGATCCACGATTTCTTACTGCAAGAGATAAGACCCAGCTCAAAGAATACTTCCCCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000531843.1
CDS CCA 72 bp TTAATGGTGTTTTTCTTAGCAACATGTCACAGTAATTaGCAAGCAGCTCAGGGCATTTTGATTCAGGCTGAG +
Preference number: 6 (lower is better)
Translates to: LMVFFLATCHSN*QAAQGILIQAE
Trigger: CTCAGCCTGAATCAAAATGCCCTGAGCTGCTTGCCAATTACTGTGACATGTTGCTAAGAAAAACACCATTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS CCA 72 bp TTTGGTTCCATGCAAACAATACAGCGAGCTGAAACGTaGTTACCTCCAAATCATATTGACCAACTTCATTCT +
Preference number: 6 (lower is better)
Translates to: FGSMQTIQRAET*LPPNHIDQLHS
Trigger: AGAATGAAGTTGGTCAATATGATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCATGGAACCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5
CDS TCA 72 bp TCAACAATATATGCTTTTAGCAAAGCCGTATCATCTTaGTGGCTCAGTACTCGGAAAACAGATCAAACCACT +
Preference number: 6 (lower is better)
Translates to: STIYAFSKAVSS*WLSTRKTDQTT
Trigger: AGTGGTTTGATCTGTTTTCCGAGTACTGAGCCATCAAGATGATACGGCTTTGCTAAAAGCATATATTGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000532064.5
CDS TCA 72 bp ACAATCGGGCGCATAAAATCCCATTTGTCTTCAAACTaGAGAGAACCTTTATTCTTTAACAGATTAGACGTC +
Preference number: 6 (lower is better)
Translates to: TIGRIKSHLSSN*REPLFFNRLDV
Trigger: GACGTCTAATCTGTTAAAGAATAAAGGTTCTCTTCAGTTTGAAGACAAATGGGATTTTATGCGCCCGATTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000393094.7
ENST00000526303.1
ENST00000531427.5
ENST00000532064.5
CDS CAA 72 bp TTAAGCTTTGCTTCAATCTCTTCAGAGGTTAGTTTTTaGCTTAATGGTGTTTTTCTTAGCAACATGTCACAG +
Preference number: 6 (lower is better)
Translates to: LSFASISSEVSF*LNGVFLSNMSQ
Trigger: CTGTGACATGTTGCTAAGAAAAACACCATTAAGCAAAAAACTAACCTCTGAAGAGATTGAAGCAAAGCTTAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000393094.7
ENST00000531427.5